This run was generated using rMAP version performed on 2021-09-06… Thank you for using this pipeline!!


Assembly summary statistics


Field Description
SampleID Name of the sample
TrimReads Total number of reads after quality filtering
MeanReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly
GC-Content GC content (%) of the draft genome
Depth Number of times each nucleotide position in the draft genome has a read that aligns to that position


SampleID TrimReads MeanReadLen Contigs GenomeLength LargestContig N50 GC-Content Depth
ID002 333369 133 172 5085287 312914 82705 55.75 8X
ID003 616477 131 76 4958142 511081 157229 50.61 16X
ID005 597741 128 164 5503138 253294 123351 50.41 13X
ID006 301512 133 161 4746822 208611 76507 50.87 8X
ID007I 327125 133 185 5249858 251703 109545 50.71 8X
ID011 418346 131 82 5277658 650706 190638 50.64 10X
ID013I 387163 132 118 5538122 533025 136363 50.55 9X
ID016I 309087 128 506 10042668 155559 38849 51.18 3X
ID017 611344 128 64 4783983 652146 192648 50.76 16X
ID018CT 383929 131 162 4680922 202930 68081 50.78 10X
ID019 443475 130 83 4528078 318059 134785 50.83 12X
ID01CT 418836 132 124 4959035 276554 104113 50.37 11X
ID021 485729 129 90 4748880 254404 138297 50.81 13X
ID027 442579 131 98 4920875 273263 125768 50.74 11X
ID031 509794 132 175 4745888 203247 67378 50.86 14X
ID034I 391983 128 87 4880038 456762 129721 50.65 10X
ID041 432401 132 100 5118190 452947 130446 50.52 11X
ID043I 350630 132 140 5031536 335497 89537 50.70 9X
ID044 518343 131 195 4763310 219806 53942 50.84 14X
ID046II 374627 132 2766 5673652 47436 2787 50.56 8X
ID049 315807 132 184 4923578 164120 64560 50.92 8X
ID051 466053 127 88 5271445 420909 190646 50.64 11X
ID054 384818 130 72 4748190 417424 168080 50.75 10X
ID057 443440 130 97 4872584 314381 167129 50.63 11X
ID066II 417035 130 2706 8536351 47520 5347 50.78 6X
ID067 380913 131 112 4496530 321712 92781 50.71 11X
ID068 407122 129 92 4686877 413265 114183 50.86 11X
ID073I 378517 130 117 4708865 234463 82744 50.72 10X
ID077 384112 130 74 4771238 353848 159025 50.71 10X
ID081I 549895 132 187 4973038 393472 107669 50.91 14X
ID086II 379756 132 86 5276370 604349 173686 50.66 9X
ID088 341590 131 111 4875888 361498 103294 50.67 9X
ID092 295355 129 3641 10642645 49162 5656 46.53 3X
ID094LLFII 424681 132 2454 6006903 51042 4609 50.92 9X
ID099 507317 133 67 4785865 652158 159018 50.77 14X
ID09CT 501222 131 66 4851737 658072 160243 50.71 13X
ID101 466611 132 75 4832987 468479 183743 50.74 12X
ID107II 318782 130 142 5410692 380994 163449 50.51 7X
ID124 586457 131 111 4770741 254387 104390 50.74 16X
ID127 515705 132 100 4756092 254984 132888 50.85 14X
ID128 357615 129 69 5262738 614760 277261 50.69 8X
ID129E 417087 130 62 5133150 554479 170577 50.32 10X
ID130 311179 131 49 4661680 736056 217984 50.60 8X
ID134 605461 131 3877 6139040 129872 1884 50.17 12X
ID136 471997 128 94 4922299 414138 166152 50.64 12X
ID141 4076 135 652 417557 2966 625 51.28 1X
ID142 16216 135 3018 2987861 8838 1063 55.69 0X
ID164 536535 130 134 5079031 265992 106189 50.52 13X
ID169 309969 130 122 5282654 344280 127935 50.64 7X
ID177 390757 130 118 5106350 404038 148325 50.50 9X
ID178 505502 129 100 5482498 530211 232451 50.52 11X
ID182 429169 128 123 4432807 160909 68935 50.89 12X
ID186 427743 129 83 4903962 387978 166965 50.72 11X
ID187 383310 129 143 4887867 311668 104237 50.75 10X
ID195 316092 128 66 4855824 658270 152225 50.71 8X
ID197 531257 130 111 4886884 292160 112653 50.67 14X
ID199 333846 127 77 4921348 511673 225144 50.88 8X
ID208 359371 131 872 9916991 200836 30570 53.06 4X
ID214 295853 130 145 5110671 241561 101626 50.69 7X
ID224 562880 130 111 4892318 254085 109368 50.63 14X
ID228 456066 132 120 5454384 733279 178763 50.58 11X
ID229 408233 132 67 5032487 652101 193349 50.46 10X
ID231 373540 131 83 4771143 315548 149908 50.74 10X
ID233 481348 133 965 5340226 82272 11243 55.91 11X
ID235 419761 133 104 5226093 384333 190454 50.55 10X
ID237 424348 133 66 4988991 453590 190762 50.66 11X
ID256 346160 131 100 5321518 571968 170320 50.62 8X
ID263 313278 128 113 4838179 254390 113836 50.82 8X
ID282 275009 130 2801 8126081 61437 4871 50.80 4X
ORTHO013EI 380640 133 366 4758537 92560 30700 56.00 10X
ORTHO055E 258537 130 742 5612561 75585 15362 56.67 5X
ORTHO082EI 368868 128 162 5399453 315952 137911 51.60 8X
ORTHO08HW 403620 132 81 5112145 433351 127758 50.50 10X

Select the parameter

Number of reads

Average number of reads per sample = 405411

Average read length

Average read length per sample = 131 bp

Number of contigs

Average number of contigs per sample = 437

Genome length

Average genome length per sample = 5242466 bp

Largest contig length

Average largest contig length per sample = 340237 bp

N50

Average N50 per sample = 116894 bp

GC content

Average GC content per sample = 51.046%

Sequencing depth

Average sequencing depth = 9.822X

Back to index

SNP-variant calling


Field Description
GenomePosition Position in the genome where SNP is found
Type Nature of the SNP identified (Only ‘True’ SNPs are shown by default)
ReferenceAllele Allele found in the reference genome
AlternateAllele Allele found in the genome of interest forming the SNP
Consequence Amino acid alterations caused by the SNP
AffectedGene The tartget gene affected by the SNP
Product The outcome from the presence of the SNP


Select the sample

ID002
## Error in read.table("ID002_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
## Error in as.data.frame(snps): object 'snps' not found
## Error in cbind(snps[, 1:7]): object 'snps' not found
## Error in colnames(snpsdata) = c("GenomePosition", "Type", "ReferenceAllele", : object 'snpsdata' not found
## Error in eval(expr, envir, enclos): object 'snpsdata' not found
## Error in row.names(snps) = NULL: object 'snps' not found
## Error in nrow(snps): object 'snps' not found
ID003
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743181 snp A T missense_variant c.355A>T p.Thr119Ser ybgI radiation resistance protein YbgI
1007522 snp C T missense_variant c.79G>A p.Val27Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007576 snp T C missense_variant c.25A>G p.Ile9Val ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441506 snp C T missense_variant c.238G>A p.Glu80Lys hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227326 snp G A missense_variant c.1433C>T p.Ala478Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227563 snp G A missense_variant c.1196C>T p.Pro399Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227668 snp A G missense_variant c.1091T>C p.Val364Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228190 snp G A missense_variant c.569C>T p.Ala190Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228502 snp C T missense_variant c.257G>A p.Ser86Asn mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630356 snp G A missense_variant c.31G>A p.Ala11Thr yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635277 snp C T missense_variant c.437C>T p.Thr146Ile yhiM inner membrane protein with a role in acid resistance
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869635 snp C T missense_variant c.259C>T p.Leu87Phe cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID005
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743181 snp A T missense_variant c.355A>T p.Thr119Ser ybgI radiation resistance protein YbgI
1007522 snp C T missense_variant c.79G>A p.Val27Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007576 snp T C missense_variant c.25A>G p.Ile9Val ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441506 snp C T missense_variant c.238G>A p.Glu80Lys hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227326 snp G A missense_variant c.1433C>T p.Ala478Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227563 snp G A missense_variant c.1196C>T p.Pro399Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227668 snp A G missense_variant c.1091T>C p.Val364Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228190 snp G A missense_variant c.569C>T p.Ala190Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228502 snp C T missense_variant c.257G>A p.Ser86Asn mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630356 snp G A missense_variant c.31G>A p.Ala11Thr yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635277 snp C T missense_variant c.437C>T p.Thr146Ile yhiM inner membrane protein with a role in acid resistance
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869635 snp C T missense_variant c.259C>T p.Leu87Phe cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID006
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620058 snp A C missense_variant c.70A>C p.Thr24Pro marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3869815 snp A T missense_variant c.439A>T p.Thr147Ser cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
ID007I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID011
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630395 snp G A missense_variant c.70G>A p.Asp24Asn yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID013I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID016I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID017
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID018CT
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216600 snp G A missense_variant c.232G>A p.Glu78Lys ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1500807 snp C A missense_variant c.235C>A p.Leu79Met tehA tellurite resistance protein
1501409 snp T A missense_variant c.837T>A p.Asp279Glu tehA tellurite resistance protein
1620068 snp C T missense_variant c.80C>T p.Pro27Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3635834 snp G A missense_variant c.994G>A p.Val332Ile yhiM inner membrane protein with a role in acid resistance
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID019
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1216472 snp G T missense_variant c.104G>T p.Gly35Val ariR regulator of acid resistance, influenced by indole
1216600 snp G A missense_variant c.232G>A p.Glu78Lys ariR regulator of acid resistance, influenced by indole
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620068 snp C T missense_variant c.80C>T p.Pro27Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103296 snp C A missense_variant c.475C>A p.Pro159Thr yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID01CT
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
5877 snp C T missense_variant c.583G>A p.Asp195Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
303486 snp G C missense_variant c.496G>C p.Val166Leu yagU inner membrane protein that contributes to acid resistance
317823 snp A G missense_variant c.497T>C p.Met166Thr rclC reactive chlorine species resistance protein C
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
1620068 snp C T missense_variant c.80C>T p.Pro27Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID021
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID027
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID031
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6222 snp T C missense_variant c.238A>G p.Ile80Val yaaA peroxide stress resistance protein YaaA
303486 snp G C missense_variant c.496G>C p.Val166Leu yagU inner membrane protein that contributes to acid resistance
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
1620068 snp C T missense_variant c.80C>T p.Pro27Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630356 snp G A missense_variant c.31G>A p.Ala11Thr yfgI nalidixic acid resistance protein YfgI
ID034I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635735 snp T A missense_variant c.895T>A p.Cys299Ser yhiM inner membrane protein with a role in acid resistance
ID041
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1006759 snp G A missense_variant c.842C>T p.Ala281Val ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501407 snp G A missense_variant c.835G>A p.Asp279Asn tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227926 snp C T missense_variant c.833G>A p.Arg278His mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228530 snp T C missense_variant c.229A>G p.Thr77Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2228668 snp C T missense_variant c.91G>A p.Ala31Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2630821 snp G C missense_variant c.496G>C p.Val166Leu yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869447 snp G A missense_variant c.71G>A p.Gly24Asp cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102920 snp G A missense_variant c.99G>A p.Met33Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID043I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1216615 snp T A missense_variant c.247T>A p.Tyr83Asn ariR regulator of acid resistance, influenced by indole
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
3657346 snp G A missense_variant c.352G>A p.Ala118Thr hdeD acid-resistance membrane protein
ID044
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID046II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID049
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1169245 snp C T missense_variant c.173C>T p.Ala58Val bhsA DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA
1500924 snp G A missense_variant c.352G>A p.Ala118Thr tehA tellurite resistance protein
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
1620068 snp C T missense_variant c.80C>T p.Pro27Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228422 snp T C missense_variant c.337A>G p.Ser113Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
3870196 snp G A missense_variant c.820G>A p.Ala274Thr cbrA colicin M resistance protein
ID051
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID054
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID057
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630450 snp G A missense_variant c.125G>A p.Arg42Lys yfgI nalidixic acid resistance protein YfgI
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869921 snp C T missense_variant c.545C>T p.Ala182Val cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID066II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
ID067
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620058 snp A C missense_variant c.70A>C p.Thr24Pro marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228304 snp A C missense_variant c.455T>G p.Ile152Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
3657547 snp T A missense_variant c.553T>A p.Leu185Met hdeD acid-resistance membrane protein
3869815 snp A T missense_variant c.439A>T p.Thr147Ser cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
ID068
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
5756 snp C G missense_variant c.704G>C p.Ser235Thr yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3635735 snp T A missense_variant c.895T>A p.Cys299Ser yhiM inner membrane protein with a role in acid resistance
ID073I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620058 snp A C missense_variant c.70A>C p.Thr24Pro marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228304 snp A C missense_variant c.455T>G p.Ile152Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
3657547 snp T A missense_variant c.553T>A p.Leu185Met hdeD acid-resistance membrane protein
3869815 snp A T missense_variant c.439A>T p.Thr147Ser cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
ID077
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227822 snp C T missense_variant c.937G>A p.Ala313Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID081I
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227476 snp C G missense_variant c.1283G>C p.Arg428Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3635699 snp T A missense_variant c.859T>A p.Leu287Ile yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
4103338 snp G A missense_variant c.517G>A p.Glu173Lys yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID086II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID088
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID092
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
ID094LLFII
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID099
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID09CT
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441604 snp C T missense_variant c.140G>A p.Ser47Asn hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228556 snp A C missense_variant c.203T>G p.Leu68Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID101
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID107II
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007428 snp G A missense_variant c.173C>T p.Thr58Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A G missense_variant c.34A>G p.Thr12Ala ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500615 snp G A missense_variant c.43G>A p.Gly15Ser tehA tellurite resistance protein
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501399 snp G T missense_variant c.827G>T p.Ser276Ile tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227510 snp C T missense_variant c.1249G>A p.Ala417Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227560 snp A G missense_variant c.1199T>C p.Val400Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227566 snp T C missense_variant c.1193A>G p.Gln398Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228239 snp G A missense_variant c.520C>T p.Arg174Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630364 snp A T missense_variant c.39A>T p.Leu13Phe yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870295 snp C A missense_variant c.919C>A p.Leu307Ile cbrA colicin M resistance protein
4102964 snp A T missense_variant c.143A>T p.Lys48Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID124
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228170 snp G A missense_variant c.589C>T p.Pro197Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
ID127
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID128
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID129E
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1441604 snp C T missense_variant c.140G>A p.Ser47Asn hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1500807 snp C A missense_variant c.235C>A p.Leu79Met tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103296 snp C A missense_variant c.475C>A p.Pro159Thr yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID130
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
742927 snp C A missense_variant c.101C>A p.Thr34Lys ybgI radiation resistance protein YbgI
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007111 snp C T missense_variant c.490G>A p.Ala164Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870346 snp G A missense_variant c.970G>A p.Gly324Ser cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID134
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
ID136
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID141
## Error in read.table("ID141_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID142
## Error in read.table("ID142_amr_snps", header = T, sep = "\t", dec = ".", : no lines available in input
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID164
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID169
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630395 snp G A missense_variant c.70G>A p.Asp24Asn yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID177
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743181 snp A T missense_variant c.355A>T p.Thr119Ser ybgI radiation resistance protein YbgI
1007522 snp C T missense_variant c.79G>A p.Val27Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007576 snp T C missense_variant c.25A>G p.Ile9Val ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441506 snp C T missense_variant c.238G>A p.Glu80Lys hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620022 snp C T missense_variant c.34C>T p.Leu12Phe marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227326 snp G A missense_variant c.1433C>T p.Ala478Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227422 snp G C missense_variant c.1337C>G p.Pro446Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227443 snp G C missense_variant c.1316C>G p.Ala439Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227563 snp G A missense_variant c.1196C>T p.Pro399Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227668 snp A G missense_variant c.1091T>C p.Val364Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228190 snp G A missense_variant c.569C>T p.Ala190Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228444 snp T G missense_variant c.315A>C p.Arg105Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228502 snp C T missense_variant c.257G>A p.Ser86Asn mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
2630356 snp G A missense_variant c.31G>A p.Ala11Thr yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635277 snp C T missense_variant c.437C>T p.Thr146Ile yhiM inner membrane protein with a role in acid resistance
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3869635 snp C T missense_variant c.259C>T p.Leu87Phe cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4103121 snp G T missense_variant c.300G>T p.Met100Ile yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID178
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007428 snp G A missense_variant c.173C>T p.Thr58Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A G missense_variant c.34A>G p.Thr12Ala ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500615 snp G A missense_variant c.43G>A p.Gly15Ser tehA tellurite resistance protein
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501399 snp G T missense_variant c.827G>T p.Ser276Ile tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227510 snp C T missense_variant c.1249G>A p.Ala417Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227560 snp A G missense_variant c.1199T>C p.Val400Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227566 snp T C missense_variant c.1193A>G p.Gln398Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228239 snp G A missense_variant c.520C>T p.Arg174Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630364 snp A T missense_variant c.39A>T p.Leu13Phe yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870295 snp C A missense_variant c.919C>A p.Leu307Ile cbrA colicin M resistance protein
4102964 snp A T missense_variant c.143A>T p.Lys48Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID182
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
742927 snp C A missense_variant c.101C>A p.Thr34Lys ybgI radiation resistance protein YbgI
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007111 snp C T missense_variant c.490G>A p.Ala164Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID186
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID187
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
1006759 snp G A missense_variant c.842C>T p.Ala281Val ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1501490 snp T G missense_variant c.918T>G p.Phe306Leu tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620031 snp T A missense_variant c.43T>A p.Phe15Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227587 snp C T missense_variant c.1172G>A p.Arg391Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227953 snp T A missense_variant c.806A>T p.Gln269Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227968 snp A G missense_variant c.791T>C p.Leu264Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2228553 snp G T missense_variant c.206C>A p.Pro69His mdtQ putative multidrug resistance outer membrane protein MdtQ
3869383 snp C T missense_variant c.7C>T p.His3Tyr cbrA colicin M resistance protein
3869407 snp C A missense_variant c.31C>A p.Leu11Ile cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID195
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1441604 snp C T missense_variant c.140G>A p.Ser47Asn hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228556 snp A C missense_variant c.203T>G p.Leu68Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID197
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228304 snp A C missense_variant c.455T>G p.Ile152Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
ID199
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6339 snp G T missense_variant c.121C>A p.Leu41Met yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007270 snp T G missense_variant c.331A>C p.Ser111Arg ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1169131 snp G A missense_variant c.59G>A p.Ser20Asn bhsA DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA
1441734 snp C G missense_variant c.10G>C p.Val4Leu hslJ lipoprotein implicated in Novobiocin resistance
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1500807 snp C A missense_variant c.235C>A p.Leu79Met tehA tellurite resistance protein
1501409 snp T A missense_variant c.837T>A p.Asp279Glu tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620037 snp G A missense_variant c.49G>A p.Ala17Thr marB multiple antibiotic resistance protein
1620046 snp G A missense_variant c.58G>A p.Val20Ile marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228032 snp G T missense_variant c.727C>A p.Pro243Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
ID208
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007428 snp G A missense_variant c.173C>T p.Thr58Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A G missense_variant c.34A>G p.Thr12Ala ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500615 snp G A missense_variant c.43G>A p.Gly15Ser tehA tellurite resistance protein
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501399 snp G T missense_variant c.827G>T p.Ser276Ile tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227510 snp C T missense_variant c.1249G>A p.Ala417Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227560 snp A G missense_variant c.1199T>C p.Val400Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227566 snp T C missense_variant c.1193A>G p.Gln398Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228239 snp G A missense_variant c.520C>T p.Arg174Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630364 snp A T missense_variant c.39A>T p.Leu13Phe yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870295 snp C A missense_variant c.919C>A p.Leu307Ile cbrA colicin M resistance protein
4102964 snp A T missense_variant c.143A>T p.Lys48Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID214
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6288 snp C T missense_variant c.172G>A p.Gly58Ser yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
1500893 snp C G missense_variant c.321C>G p.Cys107Trp tehA tellurite resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2630545 snp G A missense_variant c.220G>A p.Ala74Thr yfgI nalidixic acid resistance protein YfgI
2630629 snp G C missense_variant c.304G>C p.Glu102Gln yfgI nalidixic acid resistance protein YfgI
3657346 snp G A missense_variant c.352G>A p.Ala118Thr hdeD acid-resistance membrane protein
ID224
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228170 snp G A missense_variant c.589C>T p.Pro197Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
ID228
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501299 snp C T missense_variant c.727C>T p.Arg243Cys tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630395 snp G A missense_variant c.70G>A p.Asp24Asn yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID229
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID231
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID233
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GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
2630850 snp C A missense_variant c.525C>A p.Asp175Glu yfgI nalidixic acid resistance protein YfgI
3869486 snp G A missense_variant c.110G>A p.Cys37Tyr cbrA colicin M resistance protein
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870268 snp T G missense_variant c.892T>G p.Ser298Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID235
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
743269 snp C T missense_variant c.443C>T p.Ala148Val ybgI radiation resistance protein YbgI
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007428 snp G A missense_variant c.173C>T p.Thr58Ile ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A G missense_variant c.34A>G p.Thr12Ala ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1216562 snp G A missense_variant c.194G>A p.Ser65Asn ariR regulator of acid resistance, influenced by indole
1500615 snp G A missense_variant c.43G>A p.Gly15Ser tehA tellurite resistance protein
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1501399 snp G T missense_variant c.827G>T p.Ser276Ile tehA tellurite resistance protein
1501518 snp G A missense_variant c.946G>A p.Val316Ile tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227353 snp A G missense_variant c.1406T>C p.Leu469Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2227510 snp C T missense_variant c.1249G>A p.Ala417Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227560 snp A G missense_variant c.1199T>C p.Val400Ala mdtQ putative multidrug resistance outer membrane protein MdtQ
2227566 snp T C missense_variant c.1193A>G p.Gln398Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227872 snp G C missense_variant c.887C>G p.Pro296Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228239 snp G A missense_variant c.520C>T p.Arg174Trp mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630364 snp A T missense_variant c.39A>T p.Leu13Phe yfgI nalidixic acid resistance protein YfgI
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3635534 snp T A missense_variant c.694T>A p.Phe232Ile yhiM inner membrane protein with a role in acid resistance
3635595 snp C T missense_variant c.755C>T p.Ala252Val yhiM inner membrane protein with a role in acid resistance
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870080 snp G A missense_variant c.704G>A p.Ser235Asn cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
3870295 snp C A missense_variant c.919C>A p.Leu307Ile cbrA colicin M resistance protein
4102964 snp A T missense_variant c.143A>T p.Lys48Met yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID237
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
303055 snp T A missense_variant c.65T>A p.Leu22Gln yagU inner membrane protein that contributes to acid resistance
317737 snp T C missense_variant c.583A>G p.Thr195Ala rclC reactive chlorine species resistance protein C
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
318301 snp G T missense_variant c.19C>A p.Leu7Met rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1007596 snp G A missense_variant c.5C>T p.Ala2Val ycbX 6-N-hydroxylaminopurine resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein
4103027 snp C T missense_variant c.206C>T p.Ala69Val yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
4103116 snp T C missense_variant c.295T>C p.Tyr99His yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID256
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6408 snp T G missense_variant c.52A>C p.Thr18Pro yaaA peroxide stress resistance protein YaaA
317780 snp T A missense_variant c.540A>T p.Glu180Asp rclC reactive chlorine species resistance protein C
318312 snp T C missense_variant c.8A>G p.Lys3Arg rclC reactive chlorine species resistance protein C
742927 snp C T missense_variant c.101C>T p.Thr34Met ybgI radiation resistance protein YbgI
1006777 snp G C missense_variant c.824C>G p.Ala275Gly ycbX 6-N-hydroxylaminopurine resistance protein
1006933 snp C T missense_variant c.668G>A p.Gly223Asp ycbX 6-N-hydroxylaminopurine resistance protein
1007042 snp G T missense_variant c.559C>A p.Arg187Ser ycbX 6-N-hydroxylaminopurine resistance protein
1007131 snp T G missense_variant c.470A>C p.Asp157Ala ycbX 6-N-hydroxylaminopurine resistance protein
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1216402 snp A T missense_variant c.34A>T p.Thr12Ser ariR regulator of acid resistance, influenced by indole
1216417 snp G T missense_variant c.49G>T p.Ala17Ser ariR regulator of acid resistance, influenced by indole
1441685 snp T C missense_variant c.59A>G p.Asn20Ser hslJ lipoprotein implicated in Novobiocin resistance
1441725 snp A G missense_variant c.19T>C p.Phe7Leu hslJ lipoprotein implicated in Novobiocin resistance
1500741 snp A G missense_variant c.169A>G p.Ser57Gly tehA tellurite resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
1620016 snp G A missense_variant c.28G>A p.Ala10Thr marB multiple antibiotic resistance protein
1620086 snp C G missense_variant c.98C>G p.Ala33Gly marB multiple antibiotic resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227452 snp A C missense_variant c.1307T>G p.Leu436Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2227653 snp A G missense_variant c.1106T>C p.Ile369Thr mdtQ putative multidrug resistance outer membrane protein MdtQ
2227818 snp G A missense_variant c.941C>T p.Pro314Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227908 snp G A missense_variant c.851C>T p.Ala284Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227935 snp T A missense_variant c.824A>T p.Asn275Ile mdtQ putative multidrug resistance outer membrane protein MdtQ
2227949 snp A C missense_variant c.810T>G p.Ser270Arg mdtQ putative multidrug resistance outer membrane protein MdtQ
2228109 snp C G missense_variant c.650G>C p.Arg217Pro mdtQ putative multidrug resistance outer membrane protein MdtQ
2228145 snp C T missense_variant c.614G>A p.Cys205Tyr mdtQ putative multidrug resistance outer membrane protein MdtQ
2228151 snp C A missense_variant c.608G>T p.Arg203Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228241 snp C T missense_variant c.518G>A p.Gly173Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228265 snp G A missense_variant c.494C>T p.Pro165Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228277 snp C T missense_variant c.482G>A p.Arg161Gln mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228367 snp C A missense_variant c.392G>T p.Arg131Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228397 snp G C missense_variant c.362C>G p.Ala121Gly mdtQ putative multidrug resistance outer membrane protein MdtQ
2228406 snp C A missense_variant c.353G>T p.Arg118Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630599 snp T A missense_variant c.274T>A p.Ser92Thr yfgI nalidixic acid resistance protein YfgI
3869965 snp T G missense_variant c.589T>G p.Ser197Ala cbrA colicin M resistance protein
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
4102929 snp G C missense_variant c.108G>C p.Glu36Asp yiiM 2-amino-6-N-hydroxylaminopurine resistance protein
ID263
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6162 snp C T missense_variant c.298G>A p.Asp100Asn yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1007266 snp C T missense_variant c.335G>A p.Gly112Glu ycbX 6-N-hydroxylaminopurine resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228170 snp G A missense_variant c.589C>T p.Pro197Ser mdtQ putative multidrug resistance outer membrane protein MdtQ
ID282
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
ORTHO013EI
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GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
ORTHO055E
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GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
1620002 snp C T missense_variant c.14C>T p.Ser5Leu marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
3869974 snp A G missense_variant c.598A>G p.Asn200Asp cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870258 snp C G missense_variant c.882C>G p.Asp294Glu cbrA colicin M resistance protein
ORTHO082EI
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
743510 snp G TRUE missense_variant c.684G>T p.Glu228Asp ybgI radiation resistance protein YbgI
ORTHO08HW
GenomePosition Type ReferenceAllele AlternateAllele Consequence AffectedGene Product
5732 snp T G missense_variant c.728A>C p.Asp243Ala yaaA peroxide stress resistance protein YaaA
6239 snp G T missense_variant c.221C>A p.Ala74Glu yaaA peroxide stress resistance protein YaaA
6401 snp G A missense_variant c.59C>T p.Thr20Met yaaA peroxide stress resistance protein YaaA
318076 snp T A missense_variant c.244A>T p.Thr82Ser rclC reactive chlorine species resistance protein C
1007587 snp A G missense_variant c.14T>C p.Ile5Thr ycbX 6-N-hydroxylaminopurine resistance protein
1500753 snp G A missense_variant c.181G>A p.Ala61Thr tehA tellurite resistance protein
1620120 snp C A missense_variant c.132C>A p.His44Gln marB multiple antibiotic resistance protein
2227335 snp C A missense_variant c.1424G>T p.Gly475Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2227368 snp G A missense_variant c.1391C>T p.Pro464Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2227545 snp C A missense_variant c.1214G>T p.Trp405Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228331 snp A T missense_variant c.428T>A p.Val143Glu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228349 snp G A missense_variant c.410C>T p.Ala137Val mdtQ putative multidrug resistance outer membrane protein MdtQ
2228433 snp C A missense_variant c.326G>T p.Arg109Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2228463 snp G A missense_variant c.296C>T p.Pro99Leu mdtQ putative multidrug resistance outer membrane protein MdtQ
2630450 snp G A missense_variant c.125G>A p.Arg42Lys yfgI nalidixic acid resistance protein YfgI
3869713 snp G A missense_variant c.337G>A p.Ala113Thr cbrA colicin M resistance protein
3869921 snp C T missense_variant c.545C>T p.Ala182Val cbrA colicin M resistance protein
3870106 snp A G missense_variant c.730A>G p.Thr244Ala cbrA colicin M resistance protein
3870253 snp A G missense_variant c.877A>G p.Thr293Ala cbrA colicin M resistance protein
3870412 snp G A missense_variant c.1036G>A p.Val346Met cbrA colicin M resistance protein


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Phylogenetic inference

Phylogenetic inference based on vcf SNPS

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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Antimicrobial Resistance Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product
Resistance Antibiotic that the gene confers resistance to


Select the samples and the database

ID002
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00128 1695 2555 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00138 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00095 6564 7367 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00095 5728 6564 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00095 450 1325 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00052 16863 18008 blaMIR-1_1 0/0 100.0 99.5 M37839 blaMIR-1
contig00138 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00095 4147 5007 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00046 273 698 fosA_1 0/0 100.0 94.8 M85195 fosA Fosfomycin
contig00095 7428 8243 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00117 1429 2697 tet(A)_6 1/22 97.8 93.2 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00128 1695 2555 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00138 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00095 6564 7367 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00095 5728 6564 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00095 450 1325 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00007 7242 8435 Enterobacter_cloacae_acrA 0/0 100.0 99.5 DQ679966:299-1493 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00046 273 698 FosA2 0/0 100.0 92.5 EU487198:216-642 An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. fosfomycin
contig00052 16863 18008 MIR-5 0/0 100.0 99.6 KP050484:0-1146 MIR-5 is a beta-lactamase. From the Lahey list of MIR beta-lactamases. cephalosporin, monobactam
contig00138 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00061 20573 20924 ramA 0/0 93.9 93.2 JQ727668:0-375 RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00095 7428 8243 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00095 4147 5007 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00117 1429 2697 tet(A) 1/22 97.8 93.2 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00128 1695 2555 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00095 6564 7367 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00095 5728 6564 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00095 450 1325 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00052 16863 18008 (Bla)blaMIR-1 0/0 100.0 99.5 M37839:928-2073 (Bla)blaMIR-1 NA
contig00138 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00095 4147 5007 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00046 273 698 (Fcyn)FosA2 0/0 100.0 92.5 EU487198:217-642 (Fcyn)FosA2 NA
contig00095 7428 8243 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00117 1429 2725 (Tet)tetA 1/22 100.0 93.3 JX424423:94438-95712 (Tet)tetA NA
contig00117 757 1398 (Tet)tetR 1/9 98.6 93.1 HF545434:53576-54226 (Tet)tetR NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00128 1695 2555 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00138 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00095 6564 7391 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00095 5728 6564 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00095 450 1325 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00052 16863 18008 blaMIR-1 0/0 100 99.5 NG_049293.1 cephalosporin-hydrolyzing class C beta-lactamase MIR-1 CEPHALOSPORIN
contig00138 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00095 4147 5007 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00046 273 698 fosA 0/0 100 94.8 NG_050405.1 fosfomycin resistance glutathione transferase FosA FOSFOMYCIN
contig00027 48688 51807 oqxB9 0/0 99 90.2 NG_050458.1 multidrug efflux RND transporter permease subunit OqxB9 PHENICOL, QUINOLONE
contig00095 7428 8243 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00117 1526 2725 tet(A) 0/0 100 100.0 NG_048157.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00128 1695 2555 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00007 7242 8435 ACRB 0/0 100.0 99.5 MEG_402 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00095 6564 7391 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00095 5728 6564 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00039 23432 24374 CTX 0/0 100.0 96.4 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00046 273 851 FOSA 1/1 99.5 93.1 MEG_2990 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00052 16862 18021 MIR 0/0 100.0 99.2 MEG_3972 Drugs:betalactams:Class_C_betalactamases:MIR NA
contig00027 48688 51807 OQXB 0/0 99.0 90.2 MEG_4359 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00138 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00061 20573 20924 RAMA 0/0 93.9 93.2 MEG_6044 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA NA
contig00095 7428 8243 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00095 3780 5025 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00117 1526 2725 TETA 0/0 100.0 100.0 MEG_7021 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
ID003
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 16686 17489 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00038 15850 16686 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00038 10572 11447 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00038 14269 15129 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00060 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00008 32402 33634 mdf(A)_1 0/0 100.0 98.1 Y08743 mdf(A)
contig00038 5275 5931 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00038 17550 18365 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00059 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00030 12982 16131 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 134717 137830 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00001 501284 502441 acrE 0/0 100.0 98.4 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00001 502453 505557 acrF 0/0 100.0 97.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00001 500223 500885 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00038 16686 17489 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00038 15850 16686 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00001 300885 301704 bacA 0/0 99.8 96.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 12249 12970 baeR 0/0 99.9 97.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 10849 12252 baeS 0/0 100.0 92.2 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00020 22395 23768 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00012 15391 16023 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00038 10572 11447 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00060 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00013 60295 61467 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00013 61484 63022 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 319173 320228 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00013 59638 60168 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 317635 319173 emrY 0/0 100.0 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00006 116765 118408 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00030 16154 17347 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 160327 161460 Escherichia_coli_ampC 0/0 100.0 97.6 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 382511 383815 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 24731 25888 Escherichia_coli_ampH 0/0 100.0 96.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00008 32402 33634 Escherichia_coli_mdfA 0/0 100.0 96.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 320752 321366 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 321371 324964 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00029 54225 54953 gadW 0/0 100.0 95.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00029 55322 56146 gadX 0/0 100.0 94.3 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00005 190729 191142 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00014 7736 8413 kdpE 0/0 100.0 95.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00023 62120 62503 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 1989 3236 mdtA 0/0 100.0 96.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 3236 6358 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 6359 9436 mdtC 0/0 100.0 96.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00029 49567 50724 mdtE 0/0 100.0 98.8 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00029 50749 53862 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 83168 84394 mdtG 0/0 100.0 98.5 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 73329 74537 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00007 170444 171676 mdtM 0/0 100.0 96.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00006 93066 94097 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00006 91015 93066 mdtO 0/0 100.0 96.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 89552 91018 mdtP 0/0 100.0 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 113536 114010 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 217787 219535 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 215066 216034 pmrF 0/0 100.0 98.1 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00038 5275 5931 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00038 17550 18365 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00038 14269 15129 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00059 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00001 278685 280172 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00015 53196 54362 ugd 0/0 100.0 97.3 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 151927 153570 yojI 0/0 100.0 97.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 16686 17489 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00038 15850 16686 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00002 382511 383815 (Bla)AmpC1_Ecoli 0/0 100 96.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00006 160327 161460 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 24731 25888 (Bla)ampH_Ecoli 0/0 100 96.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00038 10572 11447 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00038 14269 15129 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00014 50257 52158 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00038 5275 5931 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00038 17550 18365 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00059 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00060 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 16686 17513 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00038 15850 16686 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00038 10572 11447 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00006 160327 161460 blaEC-8 0/0 100 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00038 14269 15129 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00060 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00038 5275 5931 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00038 17550 18365 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00059 1648 2847 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00030 16154 17347 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00030 12982 16131 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00010 134717 137830 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00001 501284 502441 ACRE 0/0 100.0 98.4 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00001 502453 505557 ACRF 0/0 100.0 97.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00001 500223 500885 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 24731 25888 AMPH 0/0 100.0 96.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00038 16686 17513 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00038 15850 16686 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00015 11035 12888 ASMA 0/0 100.0 97.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00001 300885 301704 BACA 0/0 99.8 96.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 12249 12970 BAER 0/0 99.9 97.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 10849 12252 BAES 0/0 100.0 92.2 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 125467 126657 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00006 160327 161460 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00020 21700 22398 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00020 22395 23768 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 15391 16023 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00060 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00013 60295 61467 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00013 61484 63022 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00017 87427 88617 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 319173 320336 EMRK 0/0 100.0 98.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00013 59638 60168 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 317635 319173 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00006 116765 118408 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 321371 324964 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00029 54225 54953 GADW 0/0 100.0 97.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00029 55322 56146 GADX 0/0 100.0 94.3 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00005 190729 191142 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00014 7736 8413 KDPE 0/0 100.0 95.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00023 62114 62503 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00023 61665 62099 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00008 32402 33634 MDFA 0/0 100.0 98.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 1989 3236 MDTA 0/0 100.0 96.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 3236 6358 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 6359 9436 MDTC 0/0 100.0 96.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00029 49567 50724 MDTE 0/0 100.0 98.8 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00029 50749 53862 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 83168 84394 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 73329 74537 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00011 125784 126113 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00011 125432 125797 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 54382 55754 MDTK 0/0 99.9 98.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00007 170444 171676 MDTM 0/0 100.0 96.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00006 93066 94097 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00006 91015 93066 MDTO 0/0 100.0 96.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00006 89552 91018 MDTP 0/0 100.0 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00010 113536 114010 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 217787 219535 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00014 50257 52158 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 382511 383815 PBP4B 0/0 100.0 96.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 215066 216034 PMRF 0/0 100.0 98.1 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00038 5275 5931 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00007 118875 119744 ROBA 0/0 100.0 99.5 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00006 67586 67908 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00038 17550 18365 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00038 13902 15147 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00059 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00015 53196 54362 UGD 0/0 100.0 97.3 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 151927 153570 YOGI 0/0 100.0 97.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID005
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00082 4775 5577 aph(3’’)-Ib_2 0/0 99.9 100.0 AF024602 aph(3’’)-Ib Streptomycin
contig00082 3939 4775 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00033 39169 40044 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00069 3905 4765 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00123 153 812 catA1_1 0/0 100.0 99.5 V00622 catA1 Chloramphenicol
contig00022 6725 7198 dfrA1_8 0/0 100.0 100.0 X00926 dfrA1 Trimethoprim
contig00028 32283 33515 mdf(A)_1 0/0 100.0 98.1 Y08743 mdf(A)
contig00069 8867 9788 mph(A)_2 1/1 100.0 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00097 704 1519 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00111 332 1516 tet(D)_1 0/0 100.0 100.0 AF467077 tet(D) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00016 12983 16132 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 174089 177202 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00008 163195 164352 acrE 0/0 100.0 98.4 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 164364 167468 acrF 0/0 100.0 97.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 162134 162796 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00082 4775 5578 APH(3’’)-Ib 0/0 100.0 99.9 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00082 3939 4775 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00019 83142 83961 bacA 0/0 99.8 96.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00011 52912 53633 baeR 0/0 99.9 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00011 53630 55033 baeS 0/0 100.0 96.4 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00123 153 812 catI 0/0 100.0 99.5 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00024 22395 23768 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 43239 43871 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00033 39169 40044 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00022 6725 7198 dfrA1 0/0 100.0 99.8 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00012 60295 61467 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00012 61484 63022 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00018 85324 86379 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00012 59638 60168 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00018 83786 85324 emrY 0/0 100.0 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00005 116702 118345 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00016 16155 17348 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 160265 161398 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00003 208723 210027 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 24720 25877 Escherichia_coli_ampH 0/0 100.0 96.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 3662 3994 Escherichia_coli_emrE 0/0 100.0 98.8 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00028 32283 33515 Escherichia_coli_mdfA 0/0 100.0 96.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00018 86903 87517 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00018 87522 91115 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00020 56723 57451 gadW 0/0 100.0 95.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00020 55530 56354 gadX 0/0 100.0 94.3 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00037 22698 23111 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00014 7853 8530 kdpE 0/0 100.0 95.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00002 182125 182508 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00011 62646 63893 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00011 59524 62646 mdtB 0/0 100.0 96.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00011 56446 59523 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00020 60952 62109 mdtE 0/0 100.0 98.8 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00020 57814 60927 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00021 72131 73357 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00021 62292 63500 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00005 93066 94097 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00005 91015 93066 mdtO 0/0 100.0 96.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 89552 91018 mdtP 0/0 100.0 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00069 8883 9788 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00003 152908 153382 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 140147 141895 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00026 63223 64191 pmrF 0/0 100.0 98.1 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00022 6106 6630 SAT-1 0/0 100.0 100.0 AB211124:0-525 SAT-2 is a plasmid-mediated streptothricin acetyltransferase which confers resistance to streptothricin a nucleoside antibiotic. Originally described from an E. coli plasmid sequence by Heim et al. 1989. nucleoside
contig00097 704 1519 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00069 3905 4765 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00111 332 1516 tet(D) 0/0 100.0 100.0 AF467077.1:163-1348 TetD is a tetracycline efflux pump found exclusively in Gram-negative bacteria. tetracycline
contig00019 60943 62430 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00011 120102 121268 ugd 0/0 100.0 97.5 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00026 84 1727 yojI 0/0 100.0 97.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 5260 6059 (AGly)aadA1-pm 1/3 96.3 99.5 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00022 6106 6630 (AGly)sat-2A 0/0 100.0 100.0 X51546:518-1042 (AGly)sat-2A NA
contig00082 4775 5578 (AGly)strA 0/0 100.0 100.0 AB366441:22458-23261 (AGly)strA NA
contig00082 3939 4775 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00003 208723 210027 (Bla)AmpC1_Ecoli 0/0 100.0 96.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00005 160265 161398 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 24720 25877 (Bla)ampH_Ecoli 0/0 100.0 96.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00033 39169 40044 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00069 3905 4765 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00014 50375 52276 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00069 8883 9788 (MLS)mph(A) 0/0 100.0 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00123 153 812 (Phe)catA1 0/0 100.0 99.5 V00622:244-903 (Phe)catA1 NA
contig00097 704 1519 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00111 332 1516 (Tet)tetD 0/0 100.0 100.0 AB089602:1521-2705 (Tet)tetD NA
contig00022 6725 7198 (Tmt)dfrA1 0/0 100.0 100.0 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 5260 6048 aadA1 0/0 100 100.0 NG_047327.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00082 4775 5602 aph(3’’)-Ib 0/0 100 99.9 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00082 3939 4775 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00033 39169 40044 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00005 160265 161398 blaEC-8 0/0 100 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00069 3905 4765 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00123 153 812 catA1 0/0 100 100.0 NG_047586.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00022 6725 7198 dfrA1 0/0 100 100.0 NG_047676.1 trimethoprim-resistant dihydrofolate reductase DfrA1 TRIMETHOPRIM
contig00069 8867 9788 mph(A) 1/1 100 99.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00022 6106 6630 sat2_gen 0/0 100 100.0 NG_048068.1 streptothricin N-acetyltransferase Sat2 STREPTOTHRICIN
contig00097 704 1519 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00111 332 1516 tet(D) 0/0 100 99.9 NG_048184.1 tetracycline efflux MFS transporter Tet(D) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00016 16155 17348 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00016 12983 16132 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00003 174089 177202 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00008 163195 164352 ACRE 0/0 100.0 98.4 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00008 164364 167468 ACRF 0/0 100.0 97.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00008 162134 162796 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 24720 25877 AMPH 0/0 100.0 96.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00022 5260 6059 ANT3-DPRIME 1/3 96.3 99.5 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00082 4775 5602 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00082 3939 4775 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00011 75828 77680 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00019 83142 83961 BACA 0/0 99.8 96.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00011 52912 53633 BAER 0/0 99.9 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00011 53630 55033 BAES 0/0 100.0 96.4 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00032 19024 20214 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00005 160265 161398 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00123 142 812 CATA 0/0 100.0 99.7 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00024 21700 22398 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00024 22395 23768 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 43239 43871 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00022 6725 7198 DFRA 0/0 100.0 99.8 MEG_2495 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00012 60295 61467 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00012 61484 63022 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00022 67069 68259 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00018 85324 86487 EMRK 0/0 100.0 98.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00012 59638 60168 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00018 83786 85324 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00005 116702 118345 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00018 87522 91115 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00020 56723 57451 GADW 0/0 100.0 97.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00020 55530 56354 GADX 0/0 100.0 94.3 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00037 22698 23111 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00014 7853 8530 KDPE 0/0 100.0 95.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00002 182125 182514 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00002 182529 182963 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00028 32283 33515 MDFA 0/0 100.0 98.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00011 62646 63893 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00011 59524 62646 MDTB 0/0 100.0 96.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00011 56446 59523 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00020 60952 62109 MDTE 0/0 100.0 98.8 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00020 57814 60927 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00021 72131 73357 MDTG 0/0 100.0 98.6 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00021 62292 63500 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 143629 143958 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 143277 143642 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 72227 73599 MDTK 0/0 99.9 98.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00005 93066 94097 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00005 91015 93066 MDTO 0/0 100.0 96.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00005 89552 91018 MDTP 0/0 100.0 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00069 8867 9788 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00003 152908 153382 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 140147 141895 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00001 3662 3994 MVRC 0/0 100.0 98.8 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00014 50375 52276 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00003 208723 210027 PBP4B 0/0 100.0 96.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00026 63223 64191 PMRF 0/0 100.0 98.1 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00013 60761 61630 ROBA 0/0 100.0 99.5 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00005 67586 67908 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00097 704 1519 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00069 3887 5132 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00111 332 1516 TETC 0/0 100.0 99.9 MEG_7061 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETC NA
contig00011 120102 121268 UGD 0/0 100.0 97.5 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00026 84 1727 YOGI 0/0 100.0 97.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID006
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 9348 10184 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00117 1703 2578 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00097 3904 4764 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00125 182 664 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00003 28294 29526 mdf(A)_1 0/0 100 99.4 Y08743 mdf(A)
contig00091 5805 6461 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
contig00118 264 1079 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00017 3291 6440 acrB 0/0 100.0 99.9 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 135224 138337 acrD 0/0 100.0 99.2 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00046 8610 9767 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00046 5494 8598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00046 10166 10828 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00087 9348 10184 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00024 45230 46051 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00038 30484 31206 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00038 31203 32606 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00026 40358 41731 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 9683 10315 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00117 1703 2578 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00125 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00011 22835 24007 emrA 0/0 100.0 99.8 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00011 24024 25562 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00016 51283 52338 emrK 0/0 100.0 100.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00011 22178 22708 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00016 49745 51283 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00028 18487 20130 eptA 0/0 100.0 99.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00017 6463 7656 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00028 62348 63481 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 180080 181384 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00066 15777 16934 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00002 132610 132942 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00003 28294 29526 Escherichia_coli_mdfA 0/0 100.0 97.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00016 52862 53476 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00016 53481 57074 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00075 4569 5297 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00075 3377 4201 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 147963 148376 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8269 8946 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00015 34204 34587 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00038 40219 41466 mdtA 0/0 100.0 97.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00038 37097 40219 mdtB 0/0 100.0 99.5 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00038 34019 37096 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00075 8798 9955 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00075 5660 8773 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00019 68680 69906 mdtG 0/0 100.0 99.7 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00019 58841 60049 mdtH 0/0 100.0 98.4 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00037 38798 40030 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00042 26401 27432 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00042 24350 26401 mdtO 0/0 100.0 99.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00042 22887 24353 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 114017 114491 mphB 0/0 99.6 97.0 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 51413 53161 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00010 34451 35419 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00091 5805 6461 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00118 264 1079 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00097 3904 4764 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00024 68426 69913 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00010 93683 95326 yojI 0/0 100.0 99.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 9348 10184 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 180080 181384 (Bla)AmpC1_Ecoli 0/0 100 99.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00028 62348 63481 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00066 15777 16934 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00117 1703 2578 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00097 3904 4764 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 54775 56676 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00091 5805 6461 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00118 264 1079 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00097 4937 5587 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00125 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 9348 10184 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00117 1703 2578 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00028 62348 63481 blaEC-15 0/0 100 98.4 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00097 3904 4764 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00125 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00091 5805 6461 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00118 264 1079 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00017 6463 7656 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00017 3291 6440 ACRB 0/0 100.0 99.9 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 135224 138337 ACRD 0/0 100.0 99.2 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00046 8610 9767 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00046 5494 8598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00046 10166 10828 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00066 15777 16934 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00087 9348 10184 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00012 11912 13764 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00024 45230 46051 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00038 30484 31206 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00038 31203 32606 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00025 48855 50045 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00028 62348 63481 BLAEC 0/0 100.0 98.4 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00026 39663 40361 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00026 40358 41731 CPXAR 0/0 100.0 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 9683 10315 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00125 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00011 22835 24007 EMRA 0/0 100.0 99.8 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00011 24024 25562 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00020 75717 76907 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00016 51283 52446 EMRK 0/0 100.0 100.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00011 22178 22708 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00016 49745 51283 EMRY 0/0 100.0 100.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00028 18487 20130 EPTA 0/0 100.0 99.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00016 53481 57074 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00075 4569 5297 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00075 3377 4201 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 147963 148376 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8269 8946 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00015 34198 34587 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00015 33750 34184 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 28294 29526 MDFA 0/0 100.0 99.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00038 40219 41466 MDTA 0/0 100.0 97.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00038 37097 40219 MDTB 0/0 100.0 99.5 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00038 34019 37096 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00075 8798 9955 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00075 5660 8773 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00019 68680 69906 MDTG 0/0 100.0 99.7 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00019 58841 60049 MDTH 0/0 100.0 98.4 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00007 15413 15742 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00007 15729 16094 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00007 85852 87225 MDTK 0/0 100.0 98.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00037 38798 40030 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00042 26401 27432 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00042 24350 26401 MDTO 0/0 100.0 99.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00042 22887 24353 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00001 114017 114491 MPHB 0/0 99.6 97.0 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 51413 53161 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00002 132610 132942 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00013 54775 56676 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 180080 181384 PBP4B 0/0 100.0 99.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00010 34451 35419 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00091 5805 6461 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00039 19099 19968 ROBA 0/0 100.0 100.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00042 720 1043 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00118 264 1079 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00097 3537 4782 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00010 93683 95326 YOGI 0/0 100.0 99.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID007I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 1505 2293 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00107 887 1690 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00107 51 887 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00142 247 1122 blaCTX-M-27_1 0/0 100.0 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00071 10414 11274 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00087 901 1374 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00012 29918 31150 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00087 2813 3679 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00107 1751 2566 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00121 633 1879 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 1505 2293 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00010 137241 140390 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 127119 130232 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00008 149305 150462 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 150474 153578 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 148244 148906 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00107 887 1690 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00107 51 887 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00009 129450 130269 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 166453 167174 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 167171 168574 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00013 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00142 247 1122 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00087 901 1374 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00005 47612 48784 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 48801 50339 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00078 5717 6772 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 46955 47485 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00078 4179 5717 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00033 17540 19183 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 140413 141606 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00037 13287 14420 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00010 51334 52491 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00019 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00012 29918 31150 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00078 7296 7910 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00058 1556 2284 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00058 363 1187 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00026 22379 22792 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00017 3031 3703 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 221588 221971 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 176187 177434 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 173065 176187 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 169987 173064 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00058 5785 6942 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00058 2647 5760 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00016 91892 93118 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00016 82055 83263 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00023 81590 82822 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00052 12253 13284 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00052 10202 12253 mdtO 0/0 100.0 97.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00052 8739 10205 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 103917 105665 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00027 10123 11091 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00087 2840 3679 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00107 1751 2566 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00071 10414 11274 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00121 633 1879 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00009 102280 103767 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00049 24764 25930 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 25204 26847 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 1505 2293 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00107 887 1690 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00107 51 887 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00037 13287 14420 (Bla)AmpC2_Ecoli 0/0 100.0 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 51334 52491 (Bla)ampH_Ecoli 0/0 100.0 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00142 247 1122 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00071 10414 11274 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00017 62249 64150 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00087 2840 3679 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00107 1751 2566 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00121 633 1907 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00121 1 602 (Tet)tetR 1/24 92.5 96.2 HF545434:53576-54226 (Tet)tetR NA
contig00087 901 1374 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 1505 2293 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00107 887 1714 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00107 51 887 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00142 247 1122 blaCTX-M-27 0/0 100 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00037 13287 14420 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00071 10414 11274 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00087 901 1374 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00087 2840 3679 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00107 1751 2566 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00121 708 1907 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 140413 141606 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 137241 140390 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 127119 130232 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00008 149305 150462 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00008 150474 153578 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00008 148244 148906 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 51334 52491 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00087 1505 2293 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00107 887 1714 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00107 51 887 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 189094 190946 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00009 129450 130269 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 166453 167174 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 167171 168574 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 50480 51670 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00037 13287 14420 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00013 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00142 225 1126 CTX 0/0 99.8 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00087 901 1374 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00005 47612 48784 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 48801 50339 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00003 108145 109335 EMRD 0/0 100.0 97.6 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00078 5717 6880 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 46955 47485 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00078 4179 5717 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00033 17540 19183 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00058 1556 2284 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00058 363 1187 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00026 22379 22792 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00017 3031 3703 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 221588 221977 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 221992 222426 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00012 29918 31150 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 176187 177434 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 173065 176187 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 169987 173064 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00058 5785 6942 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00058 2647 5760 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00016 91892 93118 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00016 82055 83263 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 190694 191023 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 190342 190707 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 123380 124752 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00023 81590 82822 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00052 12253 13284 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00052 10202 12253 MDTO 0/0 100.0 97.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00052 8739 10205 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00004 103917 105665 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00019 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00017 62249 64150 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00027 10123 11091 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00023 22114 22983 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00032 19203 19525 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00087 2839 3806 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00107 1751 2566 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00071 10396 11641 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00121 633 1907 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00049 24764 25930 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 25204 26847 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID011
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00066 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00048 1303 2091 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00058 961 1764 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00058 125 961 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00051 2407 3282 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00066 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00048 699 1172 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00014 29919 31151 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00076 68 905 mph(A)_1 0/0 92.5 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00048 2611 3477 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00058 1825 2640 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00049 5808 7054 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00066 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00048 1303 2091 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 279235 282384 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 127109 130222 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 150532 151689 acrE 0/0 100.0 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 151701 154805 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 149471 150133 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00058 961 1764 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00058 125 961 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 566555 567276 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 567273 568676 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00016 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00051 2407 3282 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00048 699 1172 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00006 60267 61439 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00006 61456 62994 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 222937 223992 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 59610 60140 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 223992 225530 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00009 146391 148034 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 278019 279212 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 48091 49224 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 367134 368291 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00013 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00014 29919 31151 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 221799 222413 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 218201 221794 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00020 39527 39940 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00002 53943 54615 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00019 29733 30116 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 576289 577536 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 573167 576289 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 570089 573166 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00011 91787 93013 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00011 81950 83158 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 306709 307941 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00009 116127 117158 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00009 114076 116127 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00009 112613 114079 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00076 68 905 mphA 0/0 92.5 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00015 45415 47163 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00066 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 332550 333518 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00048 2638 3477 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00058 1825 2640 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00049 5808 7054 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 630632 631798 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 391723 393366 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00048 1303 2091 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00058 961 1764 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00058 125 961 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00022 48091 49224 (Bla)AmpC2_Ecoli 0/0 100.0 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 367134 368291 (Bla)ampH_Ecoli 0/0 100.0 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00051 2407 3282 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00066 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00002 113161 115062 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00076 68 905 (MLS)mph(A) 0/0 92.5 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00048 2638 3477 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00058 1825 2640 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00049 5780 7054 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00048 699 1172 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 1696 2556 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00066 1540 2094 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00048 1303 2091 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00058 961 1788 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00058 125 961 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00051 2407 3282 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00022 48091 49224 blaEC-5 0/0 100.0 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00066 579 1409 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00048 699 1172 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00076 68 905 mph(A) 0/0 92.5 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00048 2638 3477 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00058 1825 2640 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00049 5780 6979 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00061 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00002 278019 279212 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 279235 282384 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 127109 130222 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 150532 151689 ACRE 0/0 100.0 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 151701 154805 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 149471 150133 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 367134 368291 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00048 1303 2091 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00058 961 1788 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00058 125 961 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 589196 591048 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 566555 567276 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 567273 568676 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 416999 418189 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 48091 49224 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00016 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00048 699 1172 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00006 60267 61439 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00006 61456 62994 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 222829 223992 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00006 59610 60140 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 223992 225530 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00009 146391 148034 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 218201 221794 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00020 39527 39940 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00002 53943 54615 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00019 29727 30116 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00019 29278 29712 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00014 29919 31151 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 576289 577536 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 573167 576289 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 570089 573166 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00011 91787 93013 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00011 81950 83158 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00019 60681 61010 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00019 60997 61362 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 306709 307941 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00009 116127 117158 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00009 114076 116127 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00009 112613 114079 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00076 68 905 MPHA 0/0 92.5 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00015 45415 47163 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00066 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00002 113161 115062 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 332550 333518 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 247233 248102 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00009 84260 84582 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00048 2637 3604 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00058 1825 2640 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00049 5780 7054 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 630632 631798 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 391723 393366 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID013I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00091 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00062 1638 2426 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00080 859 1662 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00080 23 859 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00100 48 923 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00091 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00050 15590 16450 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00062 1034 1507 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00011 29926 31158 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00101 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00062 2946 3812 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00080 1723 2538 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00078 914 2160 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00091 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00062 1638 2426 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 268024 271173 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 99467 102580 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00009 149304 150461 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00009 150473 153577 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00009 148243 148905 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00080 859 1662 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00080 23 859 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00006 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00027 23560 24281 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00027 22160 23563 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00014 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00100 48 923 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00062 1034 1507 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00035 48077 49249 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00035 49266 50804 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00004 5697 6752 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00035 47420 47950 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00004 4159 5697 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00020 72758 74401 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 266808 268001 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00028 48092 49225 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 355923 357080 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00012 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00011 29926 31158 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00004 7276 7890 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00004 7895 11488 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00025 39527 39940 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00001 42732 43404 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00002 289457 289840 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00027 13300 14547 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00027 14547 17669 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00027 17670 20747 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 122019 123245 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 112182 113390 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00030 38717 39949 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00020 42485 43516 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00020 40434 42485 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00020 38971 40437 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00101 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00003 247892 249640 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00091 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00007 90060 91028 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00062 2973 3812 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00080 1723 2538 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00050 15590 16450 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00078 914 2160 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00006 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00034 39758 40924 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00007 30212 31855 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00062 1638 2426 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00080 859 1662 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00080 23 859 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00028 48092 49225 (Bla)AmpC2_Ecoli 0/0 100.0 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 355923 357080 (Bla)ampH_Ecoli 0/0 100.0 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00100 48 923 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00091 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00050 15590 16450 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00001 101950 103851 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00101 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00062 2973 3812 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00080 1723 2538 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00078 914 2188 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00078 257 883 (Tet)tetR 1/24 96.3 96.3 HF545434:53576-54226 (Tet)tetR NA
contig00062 1034 1507 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00091 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00062 1638 2426 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00080 859 1686 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00080 23 859 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00100 48 923 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00028 48092 49225 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00091 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00050 15590 16450 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00062 1034 1507 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00101 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00062 2973 3812 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00080 1723 2538 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00078 989 2188 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00001 266808 268001 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 268024 271173 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 99467 102580 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00009 149304 150461 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00009 150473 153577 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00009 148243 148905 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 355923 357080 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00062 1638 2426 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00080 859 1686 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00080 23 859 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00006 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00027 23560 24281 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00027 22160 23563 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00007 5389 6579 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00028 48092 49225 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00014 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00062 1034 1507 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00035 48077 49249 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00035 49266 50804 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00005 138543 139733 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00004 5697 6860 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00035 47420 47950 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00004 4159 5697 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00020 72758 74401 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00004 7895 11488 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00025 39527 39940 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00001 42732 43404 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00002 289457 289846 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00002 289861 290295 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00011 29926 31158 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00027 13300 14547 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00027 14547 17669 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00027 17670 20747 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 122019 123245 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 112182 113390 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 258563 258892 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 258211 258576 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00030 38717 39949 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00020 42485 43516 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00020 40434 42485 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00020 38971 40437 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00101 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00003 247892 249640 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00091 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00001 101950 103851 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00007 90060 91028 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00010 19666 20535 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00020 10618 10940 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00062 2972 3939 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00080 1723 2538 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00050 15572 16817 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00078 914 2188 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00034 39758 40924 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00007 30212 31855 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID016I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00348 167 1027 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00419 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00286 2236 3037 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00008 62108 63253 blaCMY-76_1 0/0 100.0 99.0 JQ733573 blaCMY-76 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic_acid
contig00395 1684 2559 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00419 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00184 5040 5900 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00454 613 1256 catA1_1 0/0 97.6 99.8 V00622 catA1 Chloramphenicol
contig00286 1341 1838 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00005 4010 5242 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00471 68 989 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00345 4316 4960 qnrB38_1 0/0 100.0 99.5 JN173060 qnrB38 Ciprofloxacin
contig00286 3515 4381 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00380 1712 2958 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00348 167 1027 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00419 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00286 2258 3037 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00048 19781 22930 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 38866 41979 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00260 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00260 5525 8629 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00260 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 66950 67771 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00192 4385 5107 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00192 2985 4388 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00454 613 1256 catI 0/0 97.6 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00008 62108 63253 CMY-76 0/0 100.0 99.0 JQ733573:1027-2173 CMY-76 is a beta-lactamase. From the Lahey list of CMY beta-lactamases. cephamycin
contig00079 28651 30024 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00232 9608 10240 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00395 1684 2559 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00286 1341 1838 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00116 22757 23929 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00116 23946 25484 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00162 10888 11943 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00116 22100 22630 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00162 9350 10888 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00131 7749 9392 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00048 22953 24146 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00076 25623 26756 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00205 3795 5099 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00447 248 1366 Escherichia_coli_ampH 0/0 96.6 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 4010 5242 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00162 12466 13080 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00162 13085 16678 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00343 1783 2511 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00343 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00150 17822 18235 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00161 4873 5286 H-NS 0/0 100.0 90.8 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00166 8389 9066 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00024 18240 18623 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00329 4608 5855 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00329 1486 4608 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00095 747 1904 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00033 18399 19625 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00033 28254 29462 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00244 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00209 10928 11959 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00209 11959 14010 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00209 14007 15473 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00471 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00022 17704 18180 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 86958 88706 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00419 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00025 17666 18634 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00345 4316 4960 QnrB38 0/0 100.0 99.5 JN173060:2306-2951 QnrB38 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00286 3542 4381 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00184 5040 5900 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00380 1712 2958 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00023 43086 44573 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00059 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00348 167 1027 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00286 2258 3037 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00205 3795 5099 (Bla)AmpC1_Ecoli 0/0 100.0 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00076 25623 26756 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00447 248 1366 (Bla)ampH_Ecoli 0/0 96.6 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00008 62108 63253 (Bla)blaCMY-76 0/0 100.0 99.0 JQ733573:1028-2173 (Bla)blaCMY-76 NA
contig00395 1684 2559 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00419 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00184 5040 5900 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00030 38587 40488 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00345 4316 4960 (Flq)qnrB38 0/0 100.0 99.5 JN173060:2307-2951 (Flq)qnrB38 NA
contig00471 68 973 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00454 613 1256 (Phe)catA1 0/0 97.6 99.8 V00622:244-903 (Phe)catA1 NA
contig00286 3542 4381 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00380 1684 2958 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00286 1341 1838 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00348 167 1027 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00419 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00286 2246 3037 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00008 62108 63253 blaCMY-76 0/0 100.0 99.0 NG_048873.1 class C beta-lactamase CMY-76 CEPHALOSPORIN
contig00395 1684 2559 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00076 25623 26756 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00419 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00184 5040 5900 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00454 613 1256 catA1 0/0 97.6 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00286 1341 1838 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00471 68 989 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00345 4316 4960 qnrB38 0/0 100.0 99.5 NG_050500.1 quinolone resistance pentapeptide repeat protein QnrB38 QUINOLONE
contig00286 3542 4381 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00380 1684 2883 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00348 167 1027 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00048 22953 24146 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00048 19781 22930 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00022 38866 41979 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00260 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00260 5525 8629 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00260 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00447 248 1366 AMPH 0/0 96.6 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00286 2236 3037 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00093 11915 13767 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00023 66950 67771 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00192 4385 5107 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00192 2985 4388 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00012 20589 21779 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00076 25623 26756 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00454 613 1256 CATA 0/0 97.6 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00008 61101 61976 CMY 0/0 100.0 94.2 MEG_1992 Drugs:betalactams:Class_C_betalactamases:CMY NA
contig00008 62045 63270 CMY 0/0 100.0 98.4 MEG_1955 Drugs:betalactams:Class_C_betalactamases:CMY NA
contig00079 27956 28654 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00079 28651 30024 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00232 9608 10240 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00286 1341 1838 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00116 22757 23929 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00116 23946 25484 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00003 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00162 10888 12051 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00116 22100 22630 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00162 9350 10888 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00131 7749 9392 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00162 13085 16678 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00343 1783 2511 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00343 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00150 17822 18235 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00161 4873 5286 HNS 0/0 100.0 90.8 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00166 8389 9066 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00024 18234 18623 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00024 17786 18220 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 4010 5242 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00329 4608 5855 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00329 1486 4608 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00095 747 1904 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00033 18399 19625 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00033 28254 29462 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00024 51016 51345 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00024 51332 51697 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 37583 38956 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00244 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00209 10928 11959 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00209 11959 14010 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00209 14007 15473 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00471 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00022 17704 18180 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 86958 88706 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00419 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00030 38587 40488 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00205 3795 5099 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00025 17666 18634 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00345 4316 4960 QNRB 0/0 100.0 99.5 MEG_5926 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00073 19983 20852 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00091 21006 21329 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00286 3541 4508 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00184 4673 5918 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00380 1684 2958 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00425 1543 1959 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00059 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID017
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 231391 232266 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00018 26130 27362 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00002 226094 226750 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 277506 278228 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 278225 279628 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00025 22569 23942 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15235 15867 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00002 231391 232266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00005 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00011 115182 116825 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00021 50255 51388 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00009 136225 136557 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00018 26130 27362 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 190353 191081 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 191449 192273 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00001 252998 253411 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 8273 8945 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00003 245056 245439 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 287241 288488 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 284119 287241 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 281041 284118 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 185695 186852 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 186877 189990 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 462445 463671 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 452606 453814 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00011 91422 92453 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00011 89371 91422 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 87908 89374 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 598759 600507 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 76806 77774 pmrF 0/0 100.0 99.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00002 226094 226750 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00004 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00026 37105 38271 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 124793 126436 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00021 50255 51388 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00002 231391 232266 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00012 60734 62635 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00002 226094 226750 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 231391 232266 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00021 50255 51388 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00002 226094 226750 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00004 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00002 300095 301947 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 277506 278228 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 278225 279628 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 151708 152898 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00021 50255 51388 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00025 21874 22572 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00025 22569 23942 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15235 15867 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00005 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 27098 28288 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00011 115182 116825 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 190353 191081 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 191449 192273 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00001 252998 253411 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 8273 8945 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00003 245056 245445 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00003 245459 245893 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00018 26130 27362 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 287241 288488 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 284119 287241 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 281041 284118 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 185695 186852 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 186877 189990 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 462445 463671 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 452606 453814 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00003 206081 206410 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00003 205729 206094 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00003 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00011 91422 92453 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00011 89371 91422 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00011 87908 89374 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 598759 600507 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00009 136225 136557 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00012 60734 62635 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 76806 77774 PMRF 0/0 100.0 99.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00002 226094 226750 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00013 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00011 65969 66291 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00026 37105 38271 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 124793 126436 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID018CT
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 5283 6086 aph(3’’)-Ib_5 0/0 100 99.9 AF321551 aph(3’’)-Ib Streptomycin
contig00086 4447 5283 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00090 7643 8518 blaCTX-M-27_1 0/0 100 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00086 3356 4216 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00151 4 486 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00014 5710 6942 mdf(A)_1 0/0 100 98.9 Y08743 mdf(A)
contig00142 68 989 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00086 6147 6962 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 38814 41963 acrB 0/0 100.0 99.6 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 138982 142095 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 124199 125356 acrE 0/0 100.0 99.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 125368 128472 acrF 0/0 100.0 99.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 123138 123800 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00086 5283 6086 APH(3’’)-Ib 0/0 100.0 99.6 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00086 4447 5283 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 89770 90591 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00011 31718 32440 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00011 32437 33840 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00019 61378 62751 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00012 15387 16019 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00090 7643 8518 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00151 4 486 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00006 23419 24591 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00006 24608 26146 emrB 0/0 100.0 99.3 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00009 95966 97021 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 22762 23292 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00009 94428 95966 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00003 168410 170053 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 37598 38791 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 125058 126191 Escherichia_coli_ampC 0/0 100.0 98.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 170322 171626 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.7 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 126930 128087 Escherichia_coli_ampH 0/0 100.0 99.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00037 15236 15568 Escherichia_coli_emrE 0/0 100.0 100.0 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00014 5710 6942 Escherichia_coli_mdfA 0/0 100.0 97.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00009 97545 98159 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00009 98164 101757 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00058 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00058 592 1416 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00062 21689 22102 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00066 8452 9129 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00033 31082 31465 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00011 41453 42700 mdtA 0/0 100.0 97.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00011 38331 41453 mdtB 0/0 100.0 98.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00011 35253 38330 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00058 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00058 2875 5988 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00010 89535 90761 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00010 79697 80905 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00024 35501 36712 mdtM 0/0 98.3 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00045 34133 35164 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00045 32082 34133 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00045 30619 32085 mdtP 0/0 100.0 98.1 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00142 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00002 117826 118302 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00020 40795 42543 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00044 22851 23819 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00086 6147 6962 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00086 3356 4216 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00007 65905 67392 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00043 35270 36913 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 5283 6086 (AGly)strA 0/0 100 99.8 AB366441:22458-23261 (AGly)strA NA
contig00086 4447 5283 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00002 170322 171626 (Bla)AmpC1_Ecoli 0/0 100 99.7 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00003 125058 126191 (Bla)AmpC2_Ecoli 0/0 100 98.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 126930 128087 (Bla)ampH_Ecoli 0/0 100 99.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00090 7643 8518 (Bla)blaCTX-M-27 0/0 100 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00086 3356 4216 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00021 10335 12236 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00142 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00086 6147 6962 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00151 4 477 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 5283 6110 aph(3’’)-Ib 0/0 100 99.9 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00086 4447 5283 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00090 7643 8518 blaCTX-M-27 0/0 100 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00003 125058 126191 blaEC 0/0 100 100.0 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00086 3356 4216 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00151 4 477 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00142 68 989 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00086 6147 6962 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 37598 38791 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 38814 41963 ACRB 0/0 100.0 99.6 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 138982 142095 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 124199 125356 ACRE 0/0 100.0 99.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00004 125368 128472 ACRF 0/0 100.0 99.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 123138 123800 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 126930 128087 AMPH 0/0 100.0 99.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00086 5283 6110 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00086 4447 5283 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00011 55019 56871 ASMA 0/0 100.0 98.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 89770 90591 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00011 31718 32440 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00011 32437 33840 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00018 49268 50458 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00003 125058 126191 BLAEC 0/0 100.0 100.0 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00019 60683 61381 CPXAR 0/0 100.0 99.9 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 61378 62751 CPXAR 0/0 100.0 99.7 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 15387 16019 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00090 6666 7608 CTX 0/0 100.0 100.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00090 7637 8540 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00151 4 477 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00006 23419 24591 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00006 24608 26146 EMRB 0/0 100.0 99.3 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00067 16031 17221 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00009 95966 97129 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00006 22762 23292 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00009 94428 95966 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00003 168410 170053 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00009 98164 101757 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00058 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00058 592 1416 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00062 21689 22102 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00066 8452 9129 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00033 31076 31465 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00033 30627 31061 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00014 5710 6942 MDFA 0/0 100.0 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00011 41453 42700 MDTA 0/0 100.0 97.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00011 38331 41453 MDTB 0/0 100.0 98.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00011 35253 38330 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00058 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00058 2875 5988 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00010 89535 90761 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00010 79697 80905 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00042 19225 19554 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00042 19541 19906 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00016 26404 27777 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00024 35501 36712 MDTM 0/0 98.3 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00045 34133 35164 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00045 32082 34133 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00045 30619 32085 MDTP 0/0 100.0 98.1 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00142 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00002 117826 118302 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00020 40795 42543 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00037 15236 15568 MVRC 0/0 100.0 100.0 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00021 10335 12236 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 170322 171626 PBP4B 0/0 100.0 99.7 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00044 22851 23819 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00052 21713 22582 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00045 8453 8775 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00086 6147 6962 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00086 2989 4234 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00043 35270 36913 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID019
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00042 19259 20062 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00042 18423 19259 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00042 13145 14020 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00042 16842 17702 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00063 181 663 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00010 29799 31031 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00042 7848 8504 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00042 20123 20938 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00033 41311 42557 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00013 38652 41801 acrB 0/0 100.0 99.6 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 162052 165165 acrD 0/0 100.0 99.1 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 124669 125826 acrE 0/0 100.0 99.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 125838 128942 acrF 0/0 100.0 99.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 123608 124270 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00042 19259 20062 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00042 18423 19259 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00049 14111 14932 bacA 0/0 100.0 99.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00003 87518 88240 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00003 86118 87521 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00016 22469 23842 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15081 15713 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00042 13145 14020 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00063 181 663 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00005 19890 21062 emrA 0/0 100.0 99.8 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00005 21079 22617 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 64872 65927 emrK 0/0 100.0 99.2 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00005 19233 19763 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 63334 64872 emrY 0/0 100.0 98.6 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00008 145790 147433 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00013 37436 38629 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 102435 103568 Escherichia_coli_ampC 0/0 100.0 98.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 129149 130453 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00013 126663 127820 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00010 29799 31031 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 66451 67065 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 67070 70663 evgS 0/0 100.0 99.1 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00034 1784 2512 gadW 0/0 100.0 94.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00034 592 1416 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00020 76181 76594 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00011 8520 9197 kdpE 0/0 100.0 97.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 47406 47789 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00003 77258 78505 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00003 78505 81627 mdtB 0/0 100.0 97.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00003 81628 84705 mdtC 0/0 100.0 98.4 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00034 6013 7170 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00034 2875 5988 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00006 16859 18085 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00006 26714 27922 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00001 306734 307966 mdtM 0/0 100.0 97.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00014 21821 22852 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00014 22852 24903 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00014 24900 26366 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00002 186442 186916 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00007 51483 53231 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00027 22973 23941 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00042 7848 8504 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00042 20123 20938 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00042 16842 17702 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00033 41311 42557 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00028 41766 43253 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 16782 17948 ugd 0/0 100.0 96.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00003 254445 256088 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00042 19259 20062 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00042 18423 19259 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00002 129149 130453 (Bla)AmpC1_Ecoli 0/0 100 96.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00008 102435 103568 (Bla)AmpC2_Ecoli 0/0 100 98.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00013 126663 127820 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00042 13145 14020 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00042 16842 17702 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00011 62026 63927 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00042 7848 8504 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00042 20123 20938 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00033 41283 42557 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00063 181 654 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00042 19259 20086 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00042 18423 19259 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00042 13145 14020 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00008 102435 103568 blaEC 0/0 100 99.7 NG_047496.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00042 16842 17702 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00063 181 654 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00042 7848 8504 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00042 20123 20938 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00033 41283 42482 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00013 37436 38629 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00013 38652 41801 ACRB 0/0 100.0 99.6 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 162052 165165 ACRD 0/0 100.0 99.1 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 124669 125826 ACRE 0/0 100.0 99.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 125838 128942 ACRF 0/0 100.0 99.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 123608 124270 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00013 126663 127820 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00042 19259 20086 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00042 18423 19259 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00003 63003 64855 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00049 14111 14932 BACA 0/0 100.0 99.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00003 87518 88240 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 86118 87521 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 204672 205862 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00008 102435 103568 BLAEC 0/0 100.0 99.7 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00016 21774 22472 CPXAR 0/0 100.0 99.9 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 22469 23842 CPXAR 0/0 100.0 99.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15081 15713 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00063 181 654 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00005 19890 21062 EMRA 0/0 100.0 99.8 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00005 21079 22617 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00033 16352 17542 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 64872 66035 EMRK 0/0 100.0 99.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00005 19233 19763 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 63334 64872 EMRY 0/0 100.0 98.6 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00008 145790 147433 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 67070 70663 EVGS 0/0 100.0 99.1 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00034 1784 2512 GADW 0/0 100.0 99.9 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00034 592 1416 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00020 76181 76594 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00011 8520 9197 KDPE 0/0 100.0 97.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 47400 47789 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 46951 47385 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 29799 31031 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00003 77258 78505 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00003 78505 81627 MDTB 0/0 100.0 97.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00003 81628 84705 MDTC 0/0 100.0 98.4 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00034 6013 7170 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00034 2875 5988 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00006 16859 18085 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00006 26714 27922 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00031 21649 21978 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00031 21965 22330 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 164081 165454 MDTK 0/0 100.0 98.8 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00001 306734 307966 MDTM 0/0 100.0 97.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00014 21821 22852 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00014 22852 24903 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00014 24900 26366 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00002 186442 186916 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00007 51483 53231 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 62026 63927 PBP2 0/0 100.0 99.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 129149 130453 PBP4B 0/0 100.0 96.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00027 22973 23941 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00042 7848 8504 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00001 229542 230411 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00014 48323 48645 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00042 20123 20938 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00042 16475 17720 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00033 41283 42557 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00003 16782 17948 UGD 0/0 100.0 96.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00003 254445 256088 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID01CT
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00097 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00092 925 1889 ant(3’’)-Ia_1 3/7 99.3 99.1 X02340 ant(3’’)-Ia Streptomycin
contig00095 831 1634 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00095 1 831 aph(6)-Id_1 0/0 99.3 100.0 M28829 aph(6)-Id Streptomycin
contig00089 2484 3026 ARR-3_4 0/0 100.0 99.5 FM207631 ARR-3
contig00078 2385 3260 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00097 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00089 1083 1883 blaOXA-10_1 0/0 100.0 100.0 J03427 blaOXA-10 Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam
contig00100 706 1566 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00079 350 1009 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00115 128 701 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00005 49333 50565 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00110 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00080 4404 5048 qnrB1_1 0/0 100.0 100.0 DQ351241 qnrB1 Ciprofloxacin
contig00091 691 1937 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00097 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00001 89130 92279 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 71357 74470 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00031 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 5525 8629 acrF 0/0 100.0 99.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00092 925 1889 ANT(3’’)-IIa 3/7 99.3 99.1 X02340.1:222-1194 ANT(3’’)-IIa is a aminoglycoside nucleotidyltransferase identified in Acinetobacter spp. via horizontal gene transfer mechanisms. aminoglycoside
contig00095 831 1634 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00095 1 831 APH(6)-Id 0/0 99.3 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00089 2484 2936 arr-3 0/0 100.0 100.0 EU675686:1956-2409 arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis rifamycin
contig00004 30105 30926 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00016 102927 103649 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00016 101527 102930 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00079 350 1009 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00018 61611 62984 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15313 15945 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00078 2385 3260 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00115 228 701 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00015 29893 31065 emrA 0/0 100.0 99.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00015 31082 32620 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00048 2768 3823 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00015 29236 29766 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00048 1230 2768 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00036 7751 9394 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 87914 89107 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 120713 121847 Escherichia_coli_ampC 1/1 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00007 105869 107173 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 177246 178403 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 49333 50565 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00048 4347 4961 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00048 4966 8559 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00024 32273 33001 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00024 31081 31905 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00002 147432 147845 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00003 93542 94219 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00022 63335 63718 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00016 92673 93914 mdtA 1/6 99.5 96.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00016 93914 97036 mdtB 0/0 100.0 97.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00016 97037 100114 mdtC 0/0 100.0 97.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00024 36502 37659 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00024 33364 36477 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00012 21234 22460 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00012 31089 32297 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00061 9725 10936 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00043 26699 27730 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00043 24648 26699 mdtO 0/0 100.0 99.9 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00043 23185 24651 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00110 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00007 50364 50838 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00011 40850 42598 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00097 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00089 1083 1883 OXA-10 0/0 100.0 100.0 AF205943:7511-8312 OXA-10 is a beta-lactamase found in Acinetobacter baumannii and P. aeruginosa. cephalosporin, penam
contig00064 2223 3191 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00080 4367 5048 QnrB17 1/1 100.0 99.1 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00100 706 1566 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00091 691 1937 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00004 6260 7747 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00016 38819 39985 ugd 0/0 100.0 98.8 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00029 56236 57879 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00092 925 1736 (AGly)aadA1-pm 0/0 97.7 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00095 831 1634 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00095 1 831 (AGly)strB 0/0 99.3 100.0 FJ474091:264-1100 (AGly)strB NA
contig00007 105869 107173 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 120713 121847 (Bla)AmpC2_Ecoli 1/1 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 177246 178403 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00078 2385 3260 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00097 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00089 1083 1883 (Bla)blaOXA-10 0/0 100.0 100.0 HQ386834:1465-2265 (Bla)blaOXA-10 NA
contig00100 706 1566 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00003 145923 147824 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00080 4367 5048 (Flq)qnrB1 1/1 100.0 99.8 DQ351241:1-681 (Flq)qnrB1 NA
contig00110 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00079 350 1009 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00089 2484 2936 (Rif)arr3 0/0 100.0 100.0 JF806499:1353-1805 (Rif)arr3 NA
contig00091 691 1965 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00091 10 660 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00115 228 701 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1696 2556 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00097 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00089 1913 2353 aacA34 0/0 100.0 100.0 NG_047319.1 aminoglycoside 6’-N-acetyltransferase AacA34 AMINOGLYCOSIDE
contig00092 925 1716 aadA1 0/0 100.0 100.0 NG_052536.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00095 831 1658 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00095 1 831 aph(6)-Id 0/0 99.3 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00089 2484 2936 arr-3 0/0 100.0 100.0 NG_048581.1 NAD(+)–rifampin ADP-ribosyltransferase Arr-3 RIFAMYCIN
contig00078 2385 3260 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 120713 121847 blaEC-15 1/1 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00097 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00089 1083 1883 blaOXA-10 0/0 100.0 100.0 NG_049393.1 oxacillin-hydrolyzing class D beta-lactamase OXA-10 CEPHALOSPORIN
contig00100 706 1566 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00079 350 1009 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00115 228 701 dfrA7 0/0 100.0 100.0 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig00110 69 990 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00080 4404 5048 qnrB1 0/0 100.0 100.0 NG_050469.1 quinolone resistance pentapeptide repeat protein QnrB1 QUINOLONE
contig00091 766 1965 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00001 87914 89107 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 89130 92279 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00007 71357 74470 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00031 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00031 5525 8629 ACRF 0/0 100.0 99.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00031 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 177246 178403 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00092 925 1889 ANT3-DPRIME 3/7 99.3 99.1 MEG_949 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00095 831 1658 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00095 1 831 APH6 0/0 99.3 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00089 2484 3026 ARR 0/0 100.0 99.5 MEG_1135 Drugs:Rifampin:Rifampin_ADP-ribosyltransferase_Arr:ARR NA
contig00016 79213 81065 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 30105 30926 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00016 102927 103649 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00016 101527 102930 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00041 19031 20221 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 120713 121847 BLAEC 1/1 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00079 339 1009 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00018 60916 61614 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 61611 62984 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15313 15945 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00115 228 701 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00015 29893 31065 EMRA 0/0 100.0 99.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00015 31082 32620 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00045 35047 36237 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00048 2768 3931 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00015 29236 29766 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00048 1230 2768 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00036 7751 9394 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00048 4966 8559 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00024 32273 33001 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00024 31081 31905 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00002 147432 147845 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00003 93542 94219 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00022 63329 63718 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00022 62880 63314 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 49333 50565 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00016 92673 93914 MDTA 1/6 99.5 96.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00016 93914 97036 MDTB 0/0 100.0 97.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00016 97037 100114 MDTC 0/0 100.0 97.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00024 36502 37659 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00024 33364 36477 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00012 21234 22460 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00012 31089 32297 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00014 97462 97791 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00014 97110 97475 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00014 25708 27081 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00061 9725 10936 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00043 26699 27730 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00043 24648 26699 MDTO 0/0 100.0 99.9 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00043 23185 24651 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00110 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00007 50364 50838 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00011 40850 42598 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00097 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00003 145923 147824 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00007 105869 107173 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00064 2223 3191 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00089 734 1081 QACEDELTA1 0/0 100.0 100.0 MEG_5829 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 NA
contig00080 4367 5048 QNRB 1/1 100.0 99.1 MEG_5928 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00028 21739 22608 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00043 908 1230 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00100 688 1933 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00091 691 1965 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00016 38819 39985 UGD 0/0 100.0 98.8 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00029 56236 57879 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID021
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00046 24279 25139 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00063 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00010 63505 64380 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00046 18447 19307 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00060 5984 6643 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00063 6 503 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00004 10013 11245 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00082 68 989 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00063 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00067 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00046 24279 25139 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00063 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00008 39033 42182 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 71642 74755 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00040 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00040 5525 8629 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00040 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 220493 221314 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00033 31061 31783 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00033 31780 33183 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00060 5984 6643 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00015 61493 62866 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00011 15387 16019 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00010 63505 64380 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00063 6 503 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00002 58458 59630 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 59647 61185 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00014 121400 122455 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 57801 58331 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00014 119862 121400 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 131592 133235 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 37817 39010 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 36337 37470 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00009 106154 107458 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 127045 128202 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00004 10013 11245 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00014 122978 123592 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00014 123597 127190 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00034 1783 2511 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00034 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00024 62969 63382 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00016 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 231041 231424 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00033 40796 42043 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00033 37674 40796 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00033 34596 37673 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00034 6012 7169 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00034 2874 5987 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00018 16784 18010 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00018 26639 27847 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00039 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00031 10914 11945 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00031 11945 13996 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00031 13993 15459 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00082 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00009 50480 50956 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 92961 94709 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00014 17667 18635 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00063 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00046 18447 19307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00067 800 2005 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00003 196629 198116 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00013 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00046 24279 25139 (AGly)aac3-IId 0/0 100 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00063 923 1702 (AGly)aadA2 0/0 100 99.9 X68227:66-945 (AGly)aadA2 NA
contig00009 106154 107458 (Bla)AmpC1_Ecoli 0/0 100 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 36337 37470 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 127045 128202 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00010 63505 64380 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00046 18447 19307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00016 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00082 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00060 5984 6643 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00063 2207 3046 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00067 800 2005 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00063 6 503 (Tmt)dfrA12 0/0 100 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00046 24279 25139 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00063 911 1702 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00010 63505 64380 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 36337 37470 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00046 18447 19307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00060 5984 6643 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00063 6 503 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00082 68 989 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00063 2207 3046 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00067 800 2005 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00046 24279 25139 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00008 37817 39010 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 39033 42182 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00009 71642 74755 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00040 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00040 5525 8629 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00040 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 127045 128202 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00063 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00006 187571 189423 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 220493 221314 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00033 31061 31783 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00033 31780 33183 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00013 69768 70958 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 36337 37470 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00060 5984 6648 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00015 60798 61496 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00015 61493 62866 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00011 15387 16019 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00055 12903 13845 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00063 6 503 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00002 58458 59630 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 59647 61185 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00007 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00014 121400 122563 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 57801 58331 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00014 119862 121400 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 131592 133235 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00014 123597 127190 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00034 1783 2511 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00034 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00024 62969 63382 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00016 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 231041 231430 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 231444 231878 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00004 10013 11245 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00033 40796 42043 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00033 37674 40796 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00033 34596 37673 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00034 6012 7169 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00034 2874 5987 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00018 16784 18010 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00018 26639 27847 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 198307 198636 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 197955 198320 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 126553 127926 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00039 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00031 10914 11945 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00031 11945 13996 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00031 13993 15459 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00082 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00009 50480 50956 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 92961 94709 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00016 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00009 106154 107458 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00014 17667 18635 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00005 38665 39534 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00031 37076 37399 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00063 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00067 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00067 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00013 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID027
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 1221 2081 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00066 890 1678 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00069 971 1774 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00069 135 971 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00012 106601 107476 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00057 142 1002 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00066 1809 2282 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00006 30138 31370 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00091 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00069 1835 2650 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00065 781 2027 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 1221 2081 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00066 890 1678 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00003 39492 42641 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 38165 41278 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00010 144794 145951 acrE 0/0 100.0 100.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 145963 149067 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 143733 144395 acrS 0/0 100.0 99.8 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00069 971 1774 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00069 135 971 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 178973 179794 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00017 62224 62946 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00017 62943 64346 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00014 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 46838 47470 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00012 106601 107476 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00066 1809 2282 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00011 70596 71768 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00011 71785 73323 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 241167 242222 emrK 0/0 100.0 100.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00011 69939 70469 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 239629 241167 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00013 8050 9693 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00003 38276 39469 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 142575 143708 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00025 72676 73980 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.4 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00003 127608 128765 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00043 15224 15556 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00006 30138 31370 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 242745 243359 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 243364 246957 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 40033 40761 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 41129 41953 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00009 154764 155177 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00015 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00031 47771 48154 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00017 71959 73206 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00017 68837 71959 mdtB 0/0 100.0 99.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00017 65759 68836 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 35375 36532 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 36557 39670 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00016 18398 19624 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00016 28253 29461 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00051 461 1672 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00013 39131 40162 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00013 40162 42213 mdtO 0/0 100.0 99.9 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00013 42210 43676 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00091 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00025 17003 17479 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00026 51528 53276 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 136313 137281 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00069 1835 2650 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00057 142 1002 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00065 781 2027 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00002 155108 156595 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 76214 77857 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 1221 2081 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00066 890 1678 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00069 971 1774 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00069 135 971 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00025 72676 73980 (Bla)AmpC1_Ecoli 0/0 100.0 99.4 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00008 142575 143708 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 127608 128765 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00012 106601 107476 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00057 142 1002 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00015 60385 62286 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00091 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00069 1835 2650 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00065 781 2055 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00065 124 750 (Tet)tetR 1/24 96.3 96.2 HF545434:53576-54226 (Tet)tetR NA
contig00066 1809 2282 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 1221 2081 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00066 890 1678 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00069 971 1798 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00069 135 971 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00012 106601 107476 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00008 142575 143708 blaEC 0/0 100 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00057 142 1002 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00066 1809 2282 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00091 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00069 1835 2650 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00065 856 2055 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00060 1221 2081 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00003 38276 39469 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 39492 42641 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00025 38165 41278 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00010 144794 145951 ACRE 0/0 100.0 100.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00010 145963 149067 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00010 143733 144395 ACRS 0/0 100.0 99.8 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 142575 143708 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00003 127608 128765 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00066 890 1678 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00069 971 1798 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00069 135 971 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00017 84817 86669 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 178973 179794 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00017 62224 62946 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00017 62943 64346 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 49237 50427 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00014 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 46838 47470 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00066 1809 2282 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00011 70596 71768 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00011 71785 73323 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00018 21891 23081 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 241167 242330 EMRK 0/0 100.0 100.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00011 69939 70469 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 239629 241167 EMRY 0/0 100.0 100.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00013 8050 9693 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 243364 246957 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 40033 40761 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 41129 41953 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00009 154764 155177 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00015 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00031 47765 48154 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00031 47317 47751 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00006 30138 31370 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00017 71959 73206 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00017 68837 71959 MDTB 0/0 100.0 99.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00017 65759 68836 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 35375 36532 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 36557 39670 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00016 18398 19624 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00016 28253 29461 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00037 23235 23564 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00037 23551 23916 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 135264 136637 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00051 461 1672 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00013 39131 40162 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00013 40162 42213 MDTO 0/0 100.0 99.9 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00013 42210 43676 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00091 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00025 17003 17479 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00026 51528 53276 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00043 15224 15556 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00015 60385 62286 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00025 72676 73980 PBP4B 0/0 100.0 99.4 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 136313 137281 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00028 21718 22587 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00013 65745 66068 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00069 1835 2650 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00065 781 2055 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 76214 77857 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID031
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 8412 9272 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00096 1399 2200 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00109 5465 6244 aph(3’’)-Ib_5 0/0 97.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00109 4629 5465 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00087 6962 7837 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00090 2580 3440 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00122 222 881 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00096 504 1001 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00010 65054 66286 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00161 69 962 mph(A)_1 0/0 98.7 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00096 2678 3544 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00109 85 900 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00115 1570 2775 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 8412 9272 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00096 1421 2200 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00005 38857 42006 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 181007 184120 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00051 8641 9798 acrE 0/0 100.0 100.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00051 5525 8629 acrF 0/0 100.0 99.4 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00051 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00109 5465 6244 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00109 4629 5465 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00079 10387 11208 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00020 13325 14047 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00020 11925 13328 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00122 222 881 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00012 61495 62868 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00019 15936 16568 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00087 6962 7837 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00096 504 1001 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00001 19882 21054 emrA 0/0 100.0 99.7 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00001 21071 22609 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 83737 84792 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00001 19225 19755 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 82199 83737 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00056 18707 20350 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 37641 38834 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 139594 140727 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 148304 149608 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 126972 128129 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00010 65054 66286 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 85316 85930 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 85935 89528 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00028 25644 26372 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00028 24452 25276 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00015 24206 24619 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00036 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00040 24456 24839 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00020 3065 4312 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00020 4312 7434 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00020 7435 10512 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00028 29873 31030 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00028 26735 29848 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00008 82627 83853 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00008 72791 73999 mdtH 0/0 100.0 99.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00067 263 1474 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00043 2261 3292 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00043 3292 5343 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00043 5340 6806 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00161 69 962 mphA 0/0 98.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00007 9441 9915 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00016 51586 53334 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 14362 15330 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00096 2705 3544 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00109 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00090 2580 3440 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00115 1570 2775 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00026 43243 44730 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 62509 64152 yojI 0/0 100.0 98.1 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 8412 9272 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00096 1421 2200 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00109 5465 6244 (AGly)strA 0/0 97.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00109 4629 5465 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00002 148304 149608 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00003 139594 140727 (Bla)AmpC2_Ecoli 0/0 100.0 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 126972 128129 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00087 6962 7837 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00090 2580 3440 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00021 14767 16668 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00161 69 962 (MLS)mph(A) 0/0 98.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00122 222 881 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00096 2705 3544 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00109 85 900 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00115 1570 2775 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00096 504 1001 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 8412 9272 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00096 1409 2200 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00109 5465 6244 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00109 4629 5465 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00087 6962 7837 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00003 139594 140727 blaEC-15 0/0 100.0 98.4 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00090 2580 3440 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00122 222 881 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00096 504 1001 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00161 69 962 mph(A) 0/0 98.7 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00096 2705 3544 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00109 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00115 1570 2775 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 8412 9272 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 37641 38834 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 38857 42006 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 181007 184120 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00051 8641 9798 ACRE 0/0 100.0 100.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00051 5525 8629 ACRF 0/0 100.0 99.4 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00051 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 126972 128129 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00096 1399 2200 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00109 5465 6244 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00109 4629 5465 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00070 6721 8573 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00079 10387 11208 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00020 13325 14047 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00020 11925 13328 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 89654 90844 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00003 139594 140727 BLAEC 0/0 100.0 98.4 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00122 211 881 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00012 60800 61498 CPXAR 0/0 100.0 99.9 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61495 62868 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 15936 16568 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00106 5789 6731 CTX 0/0 100.0 97.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00096 504 1001 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00001 19882 21054 EMRA 0/0 100.0 99.7 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00001 21071 22609 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00078 9775 10965 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 83737 84900 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00001 19225 19755 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 82199 83737 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00056 18707 20350 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 85935 89528 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00028 25644 26372 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00028 24452 25276 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00015 24206 24619 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00036 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00040 24450 24839 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00040 24001 24435 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 65054 66286 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00020 3065 4312 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00020 4312 7434 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00020 7435 10512 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00028 29873 31030 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00028 26735 29848 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00008 82627 83853 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00008 72791 73999 MDTH 0/0 100.0 99.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00014 76122 76451 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00014 75770 76135 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00014 4368 5741 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00067 263 1474 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00043 2261 3292 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00043 3292 5343 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00043 5340 6806 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00161 69 962 MPHA 0/0 98.7 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00007 9441 9915 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00016 51586 53334 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00021 14767 16668 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 148304 149608 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 14362 15330 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00048 21743 22612 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00043 28874 29196 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00096 2704 3671 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00109 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00115 1570 2775 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00115 3569 3985 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00004 62509 64152 YOGI 0/0 100.0 98.1 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID034I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 6749 7552 aph(3’’)-Ib_5 0/0 100.0 99.9 AF321551 aph(3’’)-Ib Streptomycin
contig00053 5913 6749 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00053 429 1304 blaCTX-M-27_1 0/0 100.0 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00053 4822 5682 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00076 90 731 catA2_1 0/0 100.0 96.1 X53796 catA2 Chloramphenicol
contig00087 6 488 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00071 265 1028 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00004 148578 149810 mdf(A)_1 0/0 100.0 99.8 Y08743 mdf(A)
contig00081 68 943 mph(A)_1 0/0 96.7 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00053 7613 8428 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00065 1712 2958 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 39346 42495 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00012 83901 87014 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00049 20439 21060 acrS 0/0 93.8 99.7 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00053 6749 7552 APH(3’’)-Ib 0/0 100.0 99.6 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00053 5913 6749 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00009 67807 68628 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00018 45780 46502 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00018 44380 45783 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00076 90 731 catII_from_Escherichia_coli_K-12 0/0 100.0 96.1 X53796.1:186-828 catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. phenicol
contig00013 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 15377 16009 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00053 429 1304 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00087 6 488 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00002 58647 59819 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 59836 61374 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00014 66331 67386 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 57990 58520 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00014 64793 66331 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00005 120315 121958 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00071 291 1036 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00003 38130 39323 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 164180 165313 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00012 118413 119717 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00003 127462 128619 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00004 148578 149810 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00014 67910 68524 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00014 68529 72122 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00033 2384 3112 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00033 1192 2016 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00030 5286 5699 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00016 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00027 47772 48155 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00018 35520 36767 mdtA 0/0 100.0 97.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00018 36767 39889 mdtB 0/0 100.0 97.6 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00018 39890 42967 mdtC 0/0 100.0 98.4 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00033 6613 7770 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00033 3475 6588 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00007 18580 19806 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00007 28435 29643 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00038 9814 11025 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00005 89446 90477 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00005 87395 89446 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 85932 87398 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00081 68 943 mphA 0/0 96.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00012 62739 63215 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00021 62202 63170 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00053 7613 8428 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00053 4822 5682 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00065 1712 2958 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00009 43942 45429 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00021 2099 3742 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 6749 7552 (AGly)strA 0/0 100.0 99.8 AB366441:22458-23261 (AGly)strA NA
contig00053 5913 6749 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00012 118413 119717 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00005 164180 165313 (Bla)AmpC2_Ecoli 0/0 100.0 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 127462 128619 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00053 429 1304 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00053 4822 5682 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00016 60156 62057 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00071 291 1028 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00081 68 943 (MLS)mph(A) 0/0 96.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00076 90 731 (Phe)catA2 0/0 100.0 96.1 X53796:187-903 (Phe)catA2 NA
contig00053 7613 8428 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00065 1684 2958 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00087 6 479 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 6749 7576 aph(3’’)-Ib 0/0 100.0 99.9 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00053 5913 6749 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00053 429 1304 blaCTX-M-27 0/0 100.0 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00005 164180 165313 blaEC 0/0 100.0 100.0 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00053 4822 5682 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00076 90 731 catA2 0/0 100.0 100.0 NG_047596.1 type A-2 chloramphenicol O-acetyltransferase CatII CHLORAMPHENICOL
contig00087 6 479 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00071 291 1028 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00081 68 943 mph(A) 0/0 96.7 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00053 7613 8428 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00065 1684 2883 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 38130 39323 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 39346 42495 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00012 83901 87014 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00049 20439 21060 ACRS 0/0 93.8 99.7 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 164180 165313 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00003 127462 128619 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00053 6749 7576 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00053 5913 6749 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00018 21255 23107 ASMA 0/0 100.0 96.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00009 67807 68628 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00018 45780 46502 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00018 44380 45783 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00024 49248 50438 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00076 90 731 CATA 0/0 100.0 100.0 MEG_1568 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00013 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 15377 16009 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00053 407 1310 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00053 1339 2281 CTX 0/0 100.0 100.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00087 6 479 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00002 58647 59819 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 59836 61374 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 75505 76695 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00014 66331 67494 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 57990 58520 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00014 64793 66331 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00005 120315 121958 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00071 265 1028 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00014 68529 72122 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00033 2384 3112 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00033 1192 2016 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00030 5286 5699 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00016 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00027 47766 48155 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00027 47318 47752 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00004 148578 149810 MDFA 0/0 100.0 99.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00018 35520 36767 MDTA 0/0 100.0 97.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00018 36767 39889 MDTB 0/0 100.0 97.6 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00018 39890 42967 MDTC 0/0 100.0 98.4 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00033 6613 7770 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00033 3475 6588 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00007 18580 19806 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00007 28435 29643 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 427030 427359 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 426678 427043 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 355276 356649 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00038 9814 11025 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00005 89446 90477 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00005 87395 89446 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00005 85932 87398 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00081 68 943 MPHA 0/0 96.7 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00012 62739 63215 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00016 60156 62057 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00012 118413 119717 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00021 62202 63170 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00032 4214 5083 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00005 63992 64315 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00053 7613 8428 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00053 4455 5700 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00065 1684 2958 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00021 2099 3742 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID041
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00045 23105 23908 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00045 22269 23105 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00045 16991 17866 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00045 20688 21548 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00078 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00018 32387 33619 mdf(A)_1 0/0 100.0 97.7 Y08743 mdf(A)
contig00045 11694 12350 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00045 23969 24784 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00063 4861 6107 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00013 51650 54799 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 136643 139756 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00034 8641 9798 acrE 0/0 100.0 97.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00034 5525 8629 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00034 10197 10859 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00045 23105 23908 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00045 22269 23105 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00005 42403 43222 bacA 0/0 99.8 97.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00020 10764 11485 baeR 0/0 99.9 96.7 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00020 9364 10767 baeS 0/0 100.0 97.3 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00026 10948 12321 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00016 15385 16017 CRP 0/0 100.0 98.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00045 16991 17866 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00078 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00001 391363 392535 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00001 389808 391346 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00021 58475 59530 emrK 0/0 100.0 97.6 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00001 392662 393192 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00021 56937 58475 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00015 92678 94321 eptA 0/0 100.0 98.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00013 54822 56015 Escherichia_coli_acrA 0/0 100.0 98.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00015 49626 50759 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 170878 172182 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 14998 16155 Escherichia_coli_ampH 0/0 100.0 98.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00018 32387 33619 Escherichia_coli_mdfA 0/0 100.0 96.2 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00021 60054 60668 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00021 60673 64266 evgS 0/0 100.0 96.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00014 44014 44742 gadW 0/0 100.0 94.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00014 42821 43645 gadX 0/0 100.0 97.1 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00027 1490 1903 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00011 8204 8879 kdpE 0/0 99.7 95.7 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00009 101666 102049 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00020 504 1751 mdtA 0/0 100.0 96.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00020 1751 4873 mdtB 0/0 100.0 96.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00020 4874 7951 mdtC 0/0 100.0 96.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00014 48243 49400 mdtE 0/0 100.0 98.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00014 45105 48218 mdtF 0/0 100.0 98.7 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00012 112413 113639 mdtG 0/0 100.0 98.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00012 102574 103782 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00010 89216 90448 mdtM 0/0 100.0 96.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00019 2612 3643 mdtN 0/0 100.0 97.6 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00019 3643 5694 mdtO 0/0 100.0 96.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00019 5691 7157 mdtP 0/0 100.0 97.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 115462 115936 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00023 6476 8224 msbA 0/0 100.0 99.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00007 173975 174943 pmrF 0/0 100.0 98.8 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00045 11694 12350 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00045 23969 24784 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00045 20688 21548 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00063 4861 6107 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00005 18889 20376 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00007 112256 113899 yojI 0/0 100.0 98.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00045 23105 23908 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00045 22269 23105 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00006 170878 172182 (Bla)AmpC1_Ecoli 0/0 100 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00015 49626 50759 (Bla)AmpC2_Ecoli 0/0 100 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 14998 16155 (Bla)ampH_Ecoli 0/0 100 98.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00045 16991 17866 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00045 20688 21548 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00011 47276 49177 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00045 11694 12350 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00045 23969 24784 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00063 4833 6107 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00078 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00045 23105 23932 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00045 22269 23105 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00045 16991 17866 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00015 49626 50759 blaEC-8 0/0 100 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00045 20688 21548 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00078 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00045 11694 12350 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00045 23969 24784 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00063 4833 6032 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00013 54822 56015 ACRA 0/0 100.0 98.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00013 51650 54799 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 136643 139756 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00034 8641 9798 ACRE 0/0 100.0 97.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00034 5525 8629 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00034 10197 10859 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 14998 16155 AMPH 0/0 100.0 98.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00045 23105 23932 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00045 22269 23105 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00017 95171 97023 ASMA 0/0 100.0 97.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 42403 43222 BACA 0/0 99.8 97.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00020 10764 11485 BAER 0/0 99.9 96.7 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00020 9364 10767 BAES 0/0 100.0 97.3 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00007 85796 86986 BCR 0/0 100.0 96.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00015 49626 50759 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00026 10948 12321 CPXAR 0/0 100.0 98.5 MEG_2119 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00026 12318 13016 CPXAR 0/0 100.0 99.7 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 15385 16017 CRP 0/0 100.0 98.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00078 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00001 391363 392535 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00001 389808 391346 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00003 138194 139384 EMRD 0/0 100.0 97.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00021 58475 59638 EMRK 0/0 100.0 97.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00001 392662 393192 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00021 56937 58475 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00015 92678 94321 EPTA 0/0 100.0 98.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00021 60673 64266 EVGS 0/0 100.0 97.5 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00014 44014 44742 GADW 0/0 100.0 97.7 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00014 42821 43645 GADX 0/0 100.0 97.1 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00027 1490 1903 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00011 8204 8879 KDPE 0/0 99.7 95.7 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00009 101660 102049 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00009 101211 101645 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00018 32387 33619 MDFA 0/0 100.0 97.8 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00020 504 1751 MDTA 0/0 100.0 96.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00020 1751 4873 MDTB 0/0 100.0 96.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00020 4874 7951 MDTC 0/0 100.0 96.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00014 48243 49400 MDTE 0/0 100.0 98.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00014 45105 48218 MDTF 0/0 100.0 98.7 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00012 112413 113639 MDTG 0/0 100.0 98.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00012 102574 103782 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00009 140220 140549 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00009 140536 140901 MDTJ 0/0 100.0 100.0 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 312556 313928 MDTK 0/0 99.9 98.3 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00010 89216 90448 MDTM 0/0 100.0 96.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00019 2612 3643 MDTN 0/0 100.0 97.6 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00019 3643 5694 MDTO 0/0 100.0 96.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00019 5691 7157 MDTP 0/0 100.0 97.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 115462 115936 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00023 6476 8224 MSBA 0/0 100.0 99.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 47276 49177 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 170878 172182 PBP4B 0/0 100.0 95.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00007 173975 174943 PMRF 0/0 100.0 98.8 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00045 11694 12350 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00010 16140 17009 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 28801 29123 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00045 23969 24784 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00045 20321 21566 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00063 4833 6107 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00007 112256 113899 YOGI 0/0 100.0 98.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID043I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 33 893 aac(3)-IId_1 0/0 100 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00104 1538 2137 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00076 2472 3260 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00082 5399 6178 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00082 4563 5399 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00085 1871 2746 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00104 577 1407 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00074 176 1036 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00084 619 1278 catA1_1 0/0 100 99.8 V00622 catA1 Chloramphenicol
contig00076 1868 2341 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00008 30177 31409 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00123 68 989 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00076 3780 4646 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00082 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00088 1998 3203 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 33 893 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00104 1538 2137 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00076 2472 3260 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 39346 42495 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 148083 151196 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00075 5854 8958 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00056 20506 21168 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00082 5399 6178 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00082 4563 5399 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00017 70351 71170 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00072 10538 11260 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00072 9138 10541 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00084 619 1278 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00013 61576 62949 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 15081 15713 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00085 1871 2746 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00076 1868 2341 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00012 47169 48341 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00012 48358 49896 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 270703 271758 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00012 46512 47042 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 269165 270703 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00018 67027 68670 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 38130 39323 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 38370 39503 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 334197 335495 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 127462 128619 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00019 2074 2406 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00008 30177 31409 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 272282 272896 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 272901 276494 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00037 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00037 592 1416 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00033 5236 5649 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00030 8102 8779 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 184592 184975 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00072 278 1525 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00072 1525 4647 mdtB 0/0 100.0 97.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00072 4648 7725 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00037 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00037 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00032 18399 19625 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00032 28254 29462 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00044 3939 5171 mdtM 0/0 100.0 100.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00048 20339 21370 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00048 18288 20339 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00048 16825 18291 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00123 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00006 126902 127376 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00007 51471 53219 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00104 577 1407 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 156191 157159 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00076 3807 4646 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00082 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00074 176 1036 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00088 1998 3203 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00017 46587 48074 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 94315 95958 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 33 893 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00076 2472 3260 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00082 5399 6178 (AGly)strA 0/0 97.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00082 4563 5399 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 334197 335495 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00025 38370 39503 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 127462 128619 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00085 1871 2746 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00104 577 1407 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00074 176 1036 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00023 9089 10990 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00123 68 973 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00084 619 1278 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00076 3807 4646 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00082 85 900 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00088 1998 3203 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00076 1868 2341 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 33 893 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00104 1538 2092 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00076 2472 3260 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00082 5399 6178 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00082 4563 5399 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00085 1871 2746 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00025 38370 39503 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00104 577 1407 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00074 176 1036 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00084 619 1278 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00076 1868 2341 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00123 68 989 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00076 3807 4646 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00082 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00088 1998 3203 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 33 893 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00002 38130 39323 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 39346 42495 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 148083 151196 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00075 5854 8958 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00056 20506 21168 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 127462 128619 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00076 2472 3260 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00082 5399 6178 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00082 4563 5399 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00061 11601 13454 ASMA 0/0 100.0 96.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00017 70351 71170 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00072 10538 11260 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00072 9138 10541 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 67338 68528 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00025 38370 39503 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00084 608 1278 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00013 60881 61579 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61576 62949 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 15081 15713 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00023 12 954 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00076 1868 2341 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00012 47169 48341 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00012 48358 49896 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00034 43175 44365 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 270703 271866 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00012 46512 47042 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 269165 270703 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00018 67027 68670 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 272901 276494 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00037 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00037 592 1416 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00033 5236 5649 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00030 8102 8779 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 184592 184981 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 184995 185429 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00008 30177 31409 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00072 278 1525 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00072 1525 4647 MDTB 0/0 100.0 97.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00072 4648 7725 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00037 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00037 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00032 18399 19625 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00032 28254 29462 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 151870 152199 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 151518 151883 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 80116 81489 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00044 3939 5171 MDTM 0/0 100.0 100.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00048 20339 21370 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00048 18288 20339 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00048 16825 18291 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00123 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00006 126902 127376 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00007 51471 53219 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00019 2074 2406 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00104 577 1407 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00023 9089 10990 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 334197 335495 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 156191 157159 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00038 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00041 35222 35545 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00076 3806 4773 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00082 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00088 1998 3203 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00088 3997 4408 TETD 0/0 98.8 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00001 94315 95958 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID044
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00104 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00108 5421 6200 aph(3’’)-Ib_5 0/0 97.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00108 4585 5421 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00111 2475 3350 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00116 3851 4461 catA1_1 0/0 92.6 99.8 V00622 catA1 Chloramphenicol
contig00104 6 503 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00133 263 1026 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00001 10012 11244 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00158 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00104 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00108 85 900 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00127 850 2055 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00104 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00005 38757 41906 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 135351 138464 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00020 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 5525 8629 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00108 5421 6200 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00108 4585 5421 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00096 7786 8607 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00023 223 945 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00023 942 2345 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00116 3851 4461 catI 0/0 92.6 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00007 61493 62866 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 2640 3272 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00111 2475 3350 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00104 6 503 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00014 19864 21036 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00014 21053 22591 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00044 26582 27637 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00014 19207 19737 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00044 25044 26582 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 99938 101581 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00133 289 1034 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00005 37541 38734 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 65397 66530 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 169863 171167 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 126769 127926 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 10012 11244 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00044 28160 28774 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00044 28779 32372 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00037 2242 2970 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00037 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00024 18847 19260 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00008 8154 8831 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00056 22979 23362 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00023 9958 11205 mdtA 0/0 100.0 97.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00023 6836 9958 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00023 3758 6835 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00037 6471 7628 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00037 3333 6446 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00026 18399 19625 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00026 28254 29462 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00076 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00021 10920 11951 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00021 11951 14002 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00021 13999 15465 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00158 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00002 114189 114665 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 92960 94708 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00019 17275 18243 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00104 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00108 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00127 850 2055 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00015 56955 58442 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00036 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00104 923 1702 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00108 5421 6200 (AGly)strA 0/0 97.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00108 4585 5421 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00002 169863 171167 (Bla)AmpC1_Ecoli 0/0 100.0 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 65397 66530 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 126769 127926 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00111 2475 3350 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00008 60241 62142 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00133 289 1026 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00158 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00116 3851 4461 (Phe)catA1 0/0 92.6 99.8 V00622:244-903 (Phe)catA1 NA
contig00104 2207 3046 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00108 85 900 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00127 850 2055 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00104 6 503 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00104 911 1702 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00108 5421 6200 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00108 4585 5421 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00111 2475 3350 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 65397 66530 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00116 3851 4461 catA1 0/0 92.6 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00104 6 503 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00133 289 1026 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00158 68 998 mph(A) 2/10 100.0 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00104 2207 3046 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00108 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00127 850 2055 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 37541 38734 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 38757 41906 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 135351 138464 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00020 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00020 5525 8629 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00020 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 126769 127926 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00104 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00108 5421 6200 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00108 4585 5421 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00023 23136 24989 ASMA 0/0 100.0 95.7 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00096 7786 8607 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00023 223 945 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00023 942 2345 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00012 67340 68530 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 65397 66530 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00116 3851 4461 CATA 0/0 92.6 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00007 60798 61496 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 61493 62866 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 2640 3272 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00079 12915 13857 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00104 6 503 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00014 19864 21036 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00014 21053 22591 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00044 26582 27745 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00014 19207 19737 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00044 25044 26582 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 99938 101581 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00133 263 1026 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00044 28779 32372 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00037 2242 2970 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00037 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00024 18847 19260 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00008 8154 8831 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00056 22973 23362 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00056 22525 22959 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 10012 11244 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00023 9958 11205 MDTA 0/0 100.0 97.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00023 6836 9958 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00023 3758 6835 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00037 6471 7628 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00037 3333 6446 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00026 18399 19625 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00026 28254 29462 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00053 1572 1901 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00053 1220 1585 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00009 57987 59360 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00076 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00021 10920 11951 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00021 11951 14002 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00021 13999 15465 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00158 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00002 114189 114665 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 92960 94708 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00008 60241 62142 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 169863 171167 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00019 17275 18243 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 19976 20845 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00021 37082 37405 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00104 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00108 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00127 850 2055 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00036 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID046II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00120 692 1495 aph(3’’)-Ib_5 0/0 100.0 100 AF321551 aph(3’’)-Ib Streptomycin
contig00023 13083 13958 blaCTX-M-15_1 0/0 100.0 100 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00367 823 1683 blaTEM-1B_1 0/0 100.0 100 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00023 7786 8442 qnrS1_1 0/0 100.0 100 AB187515 qnrS1 Ciprofloxacin
contig00120 1556 2371 sul2_2 0/0 100.0 100 AY034138 sul2 Sulfamethoxazole
contig00470 1348 2594 tet(A)_6 0/0 97.8 100 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00072 3690 4847 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00072 2630 3292 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00120 692 1495 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00252 2259 3080 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00041 2930 3652 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00041 1530 2933 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00933 402 1034 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00023 13083 13958 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00264 2851 4023 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00264 1296 2834 emrB 0/0 100.0 99.3 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00258 2693 3748 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00672 26 556 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00258 1155 2693 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00306 1290 2483 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00361 2079 3236 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00924 317 649 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig02169 3 617 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00373 1 3359 evgS 0/0 93.5 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00113 20 748 gadW 0/0 100.0 95.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01389 535 1311 gadX 0/0 94.2 99.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00273 2921 3598 kdpE 0/0 100.0 99.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig01107 469 1601 mdtA 0/0 90.8 97.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00113 4249 5406 mdtE 0/0 100.0 99.6 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00113 1111 4224 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00416 439 1647 mdtH 0/0 100.0 97.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig01074 135 1166 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00324 2523 2999 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00111 943 2691 msbA 0/0 100.0 99.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00023 7786 8442 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00120 1556 2371 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00367 823 1683 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00470 1348 2594 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00365 1826 3313 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 35344 36510 ugd 0/0 100.0 98.4 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00120 692 1495 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00361 2079 3236 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00023 13083 13958 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00367 823 1683 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00023 7786 8442 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00120 1556 2371 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00470 1320 2594 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00120 692 1519 aph(3’’)-Ib 0/0 100 100 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00023 13083 13958 blaCTX-M-15 0/0 100 100 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00367 823 1683 blaTEM-1 0/0 100 100 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00023 7786 8442 qnrS1 0/0 100 100 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00120 1556 2371 sul2 0/0 100 100 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00470 1320 2519 tet(A) 0/0 100 100 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00306 1290 2483 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00072 3690 4847 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00072 2630 3292 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00361 2079 3236 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00120 692 1519 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00827 94 1946 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00252 2259 3080 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00041 2930 3652 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00041 1530 2933 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00235 1119 2309 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00933 402 1034 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01998 18 869 CTX 0/0 92.2 95.3 MEG_2378 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00264 2851 4023 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00264 1296 2834 EMRB 0/0 100.0 99.3 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00258 2693 3856 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00672 26 556 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00258 1155 2693 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00373 1 3359 EVGS 0/0 93.5 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00113 20 748 GADW 0/0 100.0 97.1 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01389 535 1311 GADX 0/0 94.2 99.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00273 2921 3598 KDPE 0/0 100.0 99.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig01107 469 1601 MDTA 0/0 90.8 97.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00113 4249 5406 MDTE 0/0 100.0 99.6 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00113 1111 4224 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00416 439 1647 MDTH 0/0 100.0 97.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00474 508 837 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00474 156 521 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig01074 135 1166 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00324 2523 2999 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00111 943 2691 MSBA 0/0 100.0 99.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00924 317 649 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00023 7786 8442 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00247 2358 3227 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01209 624 946 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00120 1556 2371 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00367 805 2050 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00470 1320 2594 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 35344 36510 UGD 0/0 100.0 98.4 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID049
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00108 1505 2293 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00131 938 1741 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00131 102 938 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00125 429 1304 blaCTX-M-27_1 0/0 100.0 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00108 901 1374 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00016 44442 45674 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00166 69 897 mph(A)_1 0/0 91.5 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00108 2813 3679 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00131 1802 2617 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00130 829 2075 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00108 1505 2293 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00008 69515 72664 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 39212 42325 acrD 0/0 100.0 99.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00131 938 1741 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00131 102 938 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00029 48202 49023 bacA 0/0 100.0 99.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 81627 82349 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 80227 81630 baeS 0/0 100.0 98.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00017 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00057 15366 15998 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00125 429 1304 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00108 901 1374 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00018 19811 20983 emrA 0/0 100.0 99.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00018 21000 22538 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00047 5171 6226 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00018 19154 19684 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00047 3633 5171 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00004 110892 112535 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 72687 73880 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00020 17734 18867 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00009 73700 75004 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00073 15454 16611 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 133978 134310 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00016 44442 45674 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00047 6750 7364 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00047 7369 10962 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00022 55847 56575 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00022 54655 55479 gadX 0/0 100.0 99.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00058 21058 21471 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00036 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00082 14558 14941 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 71367 72614 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 72614 75736 mdtB 0/0 100.0 98.3 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 75737 78814 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00022 60076 61233 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00022 56938 60051 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00010 33212 34438 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00010 43067 44275 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00034 261 1472 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00004 80031 81062 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00004 77980 80031 mdtO 0/0 100.0 99.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 76517 77983 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00166 69 897 mphA 0/0 91.5 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00009 18219 18693 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00033 25708 27456 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00005 106683 107651 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00108 2840 3679 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00131 1802 2617 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00130 829 2075 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00054 19230 20717 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 20864 22030 ugd 0/0 100.0 96.2 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00005 46584 48227 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00108 1505 2293 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00131 938 1741 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00131 102 938 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00009 73700 75004 (Bla)AmpC1_Ecoli 0/0 100.0 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00020 17734 18867 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00073 15454 16611 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00125 429 1304 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00024 8297 10198 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00166 69 897 (MLS)mph(A) 0/0 91.5 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00108 2840 3679 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00131 1802 2617 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00130 829 2103 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00130 172 798 (Tet)tetR 1/24 96.3 96.3 HF545434:53576-54226 (Tet)tetR NA
contig00108 901 1374 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00108 1505 2293 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00131 938 1765 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00131 102 938 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00125 429 1304 blaCTX-M-27 0/0 100.0 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00020 17734 18867 blaEC-15 0/0 100.0 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00108 901 1374 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00166 69 897 mph(A) 0/0 91.5 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00108 2840 3679 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00131 1802 2617 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00130 904 2103 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 72687 73880 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 69515 72664 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00009 39212 42325 ACRD 0/0 100.0 99.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00073 15454 16611 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00108 1505 2293 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00131 938 1765 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00131 102 938 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 57111 58963 ASMA 0/0 100.0 93.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00029 48202 49023 BACA 0/0 100.0 99.9 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 81627 82349 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 80227 81630 BAES 0/0 100.0 98.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00005 19496 20686 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00020 17734 18867 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00017 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00017 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00057 15366 15998 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00125 407 1310 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00125 1339 2281 CTX 0/0 100.0 100.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00108 901 1374 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00018 19811 20983 EMRA 0/0 100.0 99.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00018 21000 22538 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00069 19743 20933 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00047 5171 6334 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00018 19154 19684 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00047 3633 5171 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00004 110892 112535 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00047 7369 10962 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00022 55847 56575 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00022 54655 55479 GADX 0/0 100.0 99.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00058 21058 21471 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00036 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00082 14552 14941 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00082 14103 14537 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00016 44442 45674 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 71367 72614 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 72614 75736 MDTB 0/0 100.0 98.3 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 75737 78814 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00022 60076 61233 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00022 56938 60051 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00010 33212 34438 MDTG 0/0 100.0 99.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00010 43067 44275 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00135 852 1181 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00135 500 865 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00027 27080 28453 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00034 261 1472 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00004 80031 81062 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00004 77980 80031 MDTO 0/0 100.0 99.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00004 76517 77983 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00166 69 897 MPHA 0/0 91.5 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00009 18219 18693 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00033 25708 27456 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00001 133978 134310 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00024 8297 10198 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00009 73700 75004 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00005 106683 107651 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00021 21724 22593 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00004 54319 54641 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00108 2839 3806 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00131 1802 2617 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00130 829 2103 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 20864 22030 UGD 0/0 100.0 96.2 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00005 46584 48227 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID051
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00049 1638 2426 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00063 971 1774 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00063 135 971 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00052 2407 3282 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00049 1034 1507 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00002 29926 31158 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00080 69 967 mph(A)_1 0/0 99.2 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00049 2946 3812 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00063 1835 2650 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00062 1435 2681 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00049 1638 2426 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00006 65994 69143 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 99473 102586 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 149301 150458 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 150470 153574 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 148240 148902 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00063 971 1774 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00063 135 971 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00008 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 336758 337479 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 337476 338879 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00018 66576 67943 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00013 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00052 2407 3282 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00049 1034 1507 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00025 60096 61268 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00025 61285 62823 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00007 5703 6758 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00025 59439 59969 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00007 4165 5703 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 146399 148042 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00006 64778 65971 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 48073 49206 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 153893 155050 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00015 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00002 29926 31158 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00007 7282 7896 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00007 7901 11494 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00028 1556 2284 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00028 363 1187 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00021 63976 64389 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00002 185279 185951 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 289457 289840 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 346492 347739 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 343370 346492 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 340292 343369 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00028 5785 6942 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00028 2647 5760 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00009 122719 123945 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00009 112882 114090 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 306754 307986 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00010 116126 117157 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00010 114075 116126 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00010 112612 114078 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00080 69 967 mphA 0/0 99.2 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00017 45415 47163 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 102753 103721 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00049 2973 3812 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00063 1835 2650 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00062 1435 2681 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00008 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 400835 402001 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 161926 163569 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00049 1638 2426 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00063 971 1774 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00063 135 971 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00023 48073 49206 (Bla)AmpC2_Ecoli 0/0 100.0 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 153893 155050 (Bla)ampH_Ecoli 0/0 100.0 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00052 2407 3282 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00002 244497 246398 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00080 69 967 (MLS)mph(A) 0/0 99.2 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00049 2973 3812 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00063 1835 2650 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00062 1407 2681 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00049 1034 1507 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00049 1638 2426 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00063 971 1798 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00063 135 971 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00052 2407 3282 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00023 48073 49206 blaEC-5 0/0 100.0 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00049 1034 1507 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00080 69 967 mph(A) 0/0 99.2 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00049 2973 3812 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00063 1835 2650 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00062 1407 2606 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00006 64778 65971 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 65994 69143 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00007 99473 102586 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 149301 150458 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 150470 153574 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 148240 148902 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 153893 155050 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00049 1638 2426 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00063 971 1798 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00063 135 971 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 359399 361251 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 336758 337479 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 337476 338879 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 187202 188392 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00023 48073 49206 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00018 65881 66579 CPXAR 0/0 100.0 98.0 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 66576 67943 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00049 1034 1507 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00025 60096 61268 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00025 61285 62823 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00005 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00007 5703 6866 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00025 59439 59969 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00007 4165 5703 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 146399 148042 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00007 7901 11494 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00028 1556 2284 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00028 363 1187 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00021 63976 64389 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00002 185279 185951 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 289457 289846 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 289861 290295 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00002 29926 31158 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 346492 347739 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 343370 346492 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 340292 343369 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00028 5785 6942 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00028 2647 5760 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00009 122719 123945 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00009 112882 114090 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 258563 258892 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 258211 258576 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 306754 307986 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00010 116126 117157 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00010 114075 116126 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00010 112612 114078 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00080 69 967 MPHA 0/0 99.2 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00017 45415 47163 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00015 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00002 244497 246398 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 102753 103721 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 247278 248147 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 84259 84581 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00049 2972 3939 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00063 1835 2650 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00062 1407 2681 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 400835 402001 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 161926 163569 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID054
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 23105 23908 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00038 22269 23105 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00038 16991 17866 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00038 20688 21548 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00054 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00021 64612 65844 mdf(A)_1 0/0 100.0 99.1 Y08743 mdf(A)
contig00038 11694 12350 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00038 23969 24784 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00046 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 270324 271481 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 271493 274597 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 269263 269925 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00038 23105 23908 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00038 22269 23105 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00003 60020 60839 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 115445 116167 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 114045 115448 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 22853 24226 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15377 16009 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00038 16991 17866 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00054 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00001 56948 58120 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00001 58137 59675 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00011 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00001 56291 56821 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00011 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00025 18397 20040 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00016 92232 93365 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00011 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00029 3107 3439 Escherichia_coli_emrE 0/0 100.0 92.5 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00021 64612 65844 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00011 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00011 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00007 190423 191151 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00007 191519 192343 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 201389 201802 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8305 8977 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00024 52307 52690 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 105185 106432 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 106432 109554 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 109555 112632 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00007 185765 186922 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00007 186947 190060 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00014 96840 98066 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00014 87001 88209 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00015 82731 83963 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00017 4259 5290 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00017 5290 7341 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00017 7338 8804 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00009 51625 53373 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 304508 305476 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00038 11694 12350 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00038 23969 24784 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00038 20688 21548 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00046 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 255847 257490 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 23105 23908 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00038 22269 23105 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00011 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00016 92232 93365 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00038 16991 17866 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00038 20688 21548 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60766 62667 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00038 11694 12350 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00038 23969 24784 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00046 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00054 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 23105 23932 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00038 22269 23105 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00038 16991 17866 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00016 92232 93365 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00038 20688 21548 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00054 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00038 11694 12350 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00038 23969 24784 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00046 1648 2847 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00011 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 270324 271481 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 271493 274597 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 269263 269925 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00038 23105 23932 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00038 22269 23105 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 90930 92782 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 60020 60839 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 115445 116167 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 114045 115448 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 229386 230576 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00016 92232 93365 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 22158 22856 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 22853 24226 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15377 16009 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00054 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00001 56948 58120 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00001 58137 59675 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 92098 93288 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00011 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00001 56291 56821 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00011 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00025 18397 20040 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00011 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00007 190423 191151 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00007 191519 192343 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 201389 201802 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8305 8977 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00024 52301 52690 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00024 51853 52287 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00021 64612 65844 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 105185 106432 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 106432 109554 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 109555 112632 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00007 185765 186922 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00007 186947 190060 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00014 96840 98066 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00014 87001 88209 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00005 206080 206409 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00005 205728 206093 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 134590 135963 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00015 82731 83963 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00017 4259 5290 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00017 5290 7341 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00017 7338 8804 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00011 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00009 51625 53373 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00029 3107 3439 MVRC 0/0 100.0 92.5 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00013 60766 62667 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00011 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 304508 305476 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00038 11694 12350 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00015 11978 12847 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00017 30421 30744 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00038 23969 24784 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00038 20321 21566 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00046 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 255847 257490 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID057
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2451 3239 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00071 544 1419 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00064 1847 2320 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00003 33623 34855 mdf(A)_1 0/0 100.0 98.8 Y08743 mdf(A)
contig00092 68 989 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00064 3759 4625 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00077 1712 2958 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2451 3239 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00006 89398 92547 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 219081 222194 acrD 0/0 100.0 99.1 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00014 117852 119009 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 119021 122125 acrF 0/0 100.0 99.1 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 116791 117453 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 226672 227493 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00007 122357 123079 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00007 123076 124479 baeS 0/0 100.0 98.1 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00043 22841 24214 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15366 15998 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00071 544 1419 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00064 1847 2320 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00037 5180 6352 emrA 0/0 100.0 97.5 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00037 3625 5163 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 123335 124390 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00037 6479 7009 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 121797 123335 emrY 0/0 100.0 99.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00028 18421 20064 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00006 92570 93763 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 139346 140479 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 186659 187963 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.6 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00006 3378 4535 Escherichia_coli_ampH 0/0 100.0 99.4 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00032 2794 3126 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00003 33623 34855 Escherichia_coli_mdfA 0/0 100.0 97.2 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 124914 125528 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 125533 129126 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00039 2321 3049 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00039 1129 1953 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 173073 173486 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00017 8282 8954 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00031 22703 23086 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00007 132092 133339 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00007 128970 132092 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00007 125892 128969 mdtC 0/0 100.0 98.6 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00039 6550 7707 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00039 3412 6525 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00015 86688 87914 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00015 76849 78057 mdtH 0/0 100.0 98.4 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00005 220370 221602 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00036 26171 27202 mdtN 0/0 100.0 98.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00036 24120 26171 mdtO 0/0 100.0 98.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00036 22657 24123 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00092 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00002 243431 243905 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 133636 135384 msbA 0/0 100.0 99.4 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 17662 18630 pmrF 0/0 100.0 99.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00064 3786 4625 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00077 1712 2958 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00001 202809 204296 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00024 42512 44155 yojI 0/0 100.0 98.1 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2451 3239 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00002 186659 187963 (Bla)AmpC1_Ecoli 0/0 100 98.6 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 139346 140479 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 3378 4535 (Bla)ampH_Ecoli 0/0 100 99.4 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00071 544 1419 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00017 61082 62983 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00092 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00064 3786 4625 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00077 1684 2958 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00064 1847 2320 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00064 2451 3239 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00071 544 1419 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 139346 140479 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00064 1847 2320 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00092 68 989 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00064 3786 4625 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00077 1684 2883 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 92570 93763 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 89398 92547 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 219081 222194 ACRD 0/0 100.0 99.1 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00014 117852 119009 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00014 119021 122125 ACRF 0/0 100.0 99.1 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00014 116791 117453 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 3378 4535 AMPH 0/0 100.0 99.4 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00064 2451 3239 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00007 146007 147859 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00001 226672 227493 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00007 122357 123079 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00007 123076 124479 BAES 0/0 100.0 98.1 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00007 8694 9884 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 139346 140479 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00043 22146 22844 CPXAR 0/0 100.0 99.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00043 22841 24214 CPXAR 0/0 100.0 99.2 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15366 15998 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00064 1847 2320 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00037 5180 6352 EMRA 0/0 100.0 97.5 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00037 3625 5163 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00026 45787 46977 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 123335 124498 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00037 6479 7009 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 121797 123335 EMRY 0/0 100.0 99.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00028 18421 20064 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 125533 129126 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00039 2321 3049 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00039 1129 1953 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 173073 173486 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00017 8282 8954 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00031 22697 23086 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00031 22249 22683 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 33623 34855 MDFA 0/0 100.0 98.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00007 132092 133339 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00007 128970 132092 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00007 125892 128969 MDTC 0/0 100.0 98.6 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00039 6550 7707 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00039 3412 6525 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00015 86688 87914 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00015 76849 78057 MDTH 0/0 100.0 98.4 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00022 39088 39417 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00022 39404 39769 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 131056 132429 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00005 220370 221602 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00036 26171 27202 MDTN 0/0 100.0 98.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00036 24120 26171 MDTO 0/0 100.0 98.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00036 22657 24123 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00092 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00002 243431 243905 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 133636 135384 MSBA 0/0 100.0 99.4 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00032 2794 3126 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00017 61082 62983 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 186659 187963 PBP4B 0/0 100.0 98.6 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 17662 18630 PMRF 0/0 100.0 99.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00005 156450 157319 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00036 719 1041 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00064 3785 4752 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00077 1684 2958 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00024 42512 44155 YOGI 0/0 100.0 98.1 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID066II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00898 1945 2805 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig01356 823 1683 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig01151 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00360 1522 2310 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig01094 843 1646 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig01094 7 843 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig01278 416 1291 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig01151 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00470 3103 3963 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00360 918 1391 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00659 2526 3758 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00360 2830 3696 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00820 970 2216 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
contig00598 750 1955 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01356 823 1683 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00898 1945 2805 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig01151 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00360 1522 2310 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00802 167 3206 acrB 0/0 96.5 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00295 1934 5047 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00311 1663 4776 acrD 0/0 100.0 98.5 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig01144 181 1338 acrE 0/0 100.0 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig01094 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig01094 7 843 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig01005 280 1099 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig01534 419 1240 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00082 11294 12016 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00732 223 944 baeR 0/0 99.9 96.7 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00082 9894 11297 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00732 941 2344 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00717 2943 3538 CRP 0/0 94.2 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01278 416 1291 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00360 918 1391 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00661 1008 2180 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00402 999 2537 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00661 2197 3735 emrB 0/0 100.0 98.1 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00390 3343 4398 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00456 3330 4385 emrK 0/0 100.0 97.3 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00661 351 881 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00390 1805 3343 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00456 1792 3330 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00644 1515 3158 eptA 0/0 100.0 91.1 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00395 2654 3787 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00051 11026 12330 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00416 202 1359 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00488 3646 4768 Escherichia_coli_ampH 0/0 97.0 97.2 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00659 2526 3758 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00390 4922 5536 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00013 1613 2341 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00688 178 906 gadW 0/0 100.0 99.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00013 421 1245 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01848 363 1143 gadX 0/0 94.7 93.6 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00074 5134 5811 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00175 5134 5806 kdpE 0/0 99.3 95.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00472 953 1336 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig01750 701 1084 marA 0/0 100.0 98.4 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00082 1034 2281 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00710 793 2040 mdtA 0/0 100.0 95.7 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00082 2281 5403 mdtB 0/0 100.0 99.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00082 5404 8481 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00513 17 3094 mdtC 0/0 100.0 93.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00013 5842 6999 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00815 726 1883 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00013 2704 5817 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00481 340 1566 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig01373 522 1730 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00703 1575 2807 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00296 3571 4602 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00296 4602 6653 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00540 876 2927 mdtO 0/0 100.0 97.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00540 2924 4387 mdtP 0/0 99.8 97.7 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00039 10459 10933 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00178 3202 4950 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig01151 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00398 2192 3160 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00881 1937 2905 pmrF 0/0 100.0 97.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00360 2857 3696 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00470 3103 3963 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00820 970 2216 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00598 750 1955 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00226 4598 5764 ugd 0/0 100.0 97.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00898 1945 2805 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig01356 823 1683 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00360 1522 2310 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig01094 843 1646 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig01094 7 843 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00051 11026 12330 (Bla)AmpC1_Ecoli 0/0 100.0 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00395 2654 3787 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00416 202 1359 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00488 3646 4768 (Bla)ampH_Ecoli 0/0 97.0 97.2 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01278 416 1291 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig01151 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00470 3103 3963 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00884 141 2042 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00360 2857 3696 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00820 970 2244 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00598 750 1955 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00820 313 939 (Tet)tetR 1/24 96.3 96.3 HF545434:53576-54226 (Tet)tetR NA
contig00360 918 1391 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01356 823 1683 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00898 1945 2805 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig01151 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00360 1522 2310 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig01094 843 1670 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig01094 7 843 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig01278 416 1291 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00395 2654 3787 blaEC-5 0/0 100 99.8 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig01151 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00470 3103 3963 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00360 918 1391 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00360 2857 3696 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00820 1045 2244 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00598 750 1955 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00898 1945 2805 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig01356 823 1683 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00802 167 3206 ACRB 0/0 96.5 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00295 1934 5047 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00311 1663 4776 ACRD 0/0 100.0 98.5 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig01144 181 1338 ACRE 0/0 100.0 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00416 202 1359 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00488 3646 4768 AMPH 0/0 97.0 97.2 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00360 1522 2310 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig01094 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig01094 7 843 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig01005 280 1099 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig01534 419 1240 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00082 11294 12016 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00732 223 944 BAER 0/0 99.9 96.7 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00082 9894 11297 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00732 941 2344 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00198 4773 5963 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00395 2654 3787 BLAEC 0/0 100.0 99.8 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00704 2406 3104 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00717 2943 3538 CRP 0/0 94.2 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01989 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00360 918 1391 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00661 1008 2180 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00402 999 2537 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00661 2197 3735 EMRB 0/0 100.0 98.1 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig01139 401 1591 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00390 3343 4506 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00456 3330 4493 EMRK 0/0 100.0 97.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00661 351 881 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00390 1805 3343 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00456 1792 3330 EMRY 0/0 100.0 97.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00644 1515 3158 EPTA 0/0 100.0 91.1 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00013 1613 2341 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00688 178 906 GADW 0/0 100.0 99.7 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00013 421 1245 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01848 363 1143 GADX 0/0 94.7 93.6 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00074 5134 5811 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00175 5134 5806 KDPE 0/0 99.3 95.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00472 947 1336 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig01750 695 1084 MARA 0/0 100.0 98.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00472 499 933 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig01750 246 680 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00659 2526 3758 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00082 1034 2281 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00710 793 2040 MDTA 0/0 100.0 95.7 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00082 2281 5403 MDTB 0/0 100.0 99.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00082 5404 8481 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00513 17 3094 MDTC 0/0 100.0 93.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00013 5842 6999 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00815 726 1883 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00013 2704 5817 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00481 340 1566 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig01373 522 1730 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00909 595 924 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig01093 595 924 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00909 243 608 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig01093 243 608 MDTJ 0/0 100.0 97.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00703 1575 2807 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00296 3571 4602 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00296 4602 6653 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00540 876 2927 MDTO 0/0 100.0 97.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00540 2924 4387 MDTP 0/0 99.8 97.7 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00039 10459 10933 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00178 3202 4950 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig01151 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00884 141 2042 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00051 11026 12330 PBP4B 0/0 100.0 95.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00398 2192 3160 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00881 1937 2905 PMRF 0/0 100.0 97.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00329 4795 5664 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00412 3998 4867 ROBA 0/0 100.0 97.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00360 2856 3823 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00470 3085 4330 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00820 970 2244 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00598 750 1955 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00598 2749 3165 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00226 4598 5764 UGD 0/0 100.0 97.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID067
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 23105 23908 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00049 22269 23105 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00049 16991 17866 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00049 20688 21548 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00092 181 663 dfrA14_5 0/0 100.0 99.4 DQ388123 dfrA14 Trimethoprim
contig00010 2389 3621 mdf(A)_1 0/0 100.0 99.3 Y08743 mdf(A)
contig00049 11694 12350 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00049 23969 24784 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00083 3242 4488 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 88485 91634 acrB 0/0 100.0 99.4 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 183201 186314 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 140117 141274 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 141286 144390 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 139056 139718 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00049 23105 23908 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00049 22269 23105 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00064 11886 12707 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00026 38666 39388 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00026 37266 38669 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00022 61701 63074 cpxA 0/0 100.0 98.7 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00015 15012 15644 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00049 16991 17866 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00092 181 663 dfrA14 0/0 100.0 99.6 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00012 37589 38761 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00012 38778 40316 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 84977 86032 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00012 36932 37462 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 83439 84977 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00025 24538 26181 eptA 0/0 100.0 99.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 91657 92850 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 129825 130958 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 145408 146712 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 2471 3628 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00040 32107 32439 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00010 2389 3621 Escherichia_coli_mdfA 0/0 100.0 97.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 86556 87170 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 87175 90768 evgS 0/0 100.0 99.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00020 31791 32519 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00020 30599 31423 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00034 5364 5777 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00060 9569 10246 kdpE 0/0 100.0 99.1 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00068 3021 3404 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00026 28406 29653 mdtA 0/0 100.0 99.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00026 29653 32775 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00026 32776 35853 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00020 36020 37177 mdtE 0/0 100.0 99.9 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00020 32882 35995 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00073 2961 4187 mdtG 0/0 100.0 99.7 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00007 127619 128827 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00017 71160 72391 mdtM 1/1 99.9 96.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00014 5198 6229 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00014 6229 8280 mdtO 0/0 100.0 99.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00014 8277 9743 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 206992 207468 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00009 50809 52557 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00019 15348 16316 pmrF 0/0 100.0 99.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00049 11694 12350 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00049 23969 24784 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00049 20688 21548 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00083 3242 4488 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00006 126983 128470 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00019 74578 76221 yojI 0/0 100.0 99.7 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 23105 23908 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00049 22269 23105 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 145408 146712 (Bla)AmpC1_Ecoli 0/0 100 99.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00008 129825 130958 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 2471 3628 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00049 16991 17866 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00049 20688 21548 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00016 34560 36461 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00049 11694 12350 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00049 23969 24784 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00083 3214 4488 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00083 4519 5169 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00092 181 654 (Tmt)dfrA14 0/0 100 99.8 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 23105 23932 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00049 22269 23105 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00049 16991 17866 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00008 129825 130958 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00049 20688 21548 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00092 181 654 dfrA14 0/0 100 99.8 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00049 11694 12350 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00049 23969 24784 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00083 3214 4413 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 91657 92850 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 88485 91634 ACRB 0/0 100.0 99.4 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 183201 186314 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 140117 141274 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 141286 144390 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 139056 139718 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 2471 3628 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00049 23105 23932 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00049 22269 23105 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00026 14151 16003 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00064 11886 12707 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00026 38666 39388 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00026 37266 38669 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00011 80954 82144 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00008 129825 130958 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00022 61006 61704 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00022 61701 63074 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00015 15012 15644 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00001 154530 155470 CTX 0/0 99.8 91.8 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00072 1653 2595 CTX 0/0 100.0 95.3 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00092 181 654 DFRA 0/0 100.0 99.6 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00012 37589 38761 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00012 38778 40316 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00063 14218 15408 EMRD 0/0 100.0 99.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 84977 86140 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00012 36932 37462 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 83439 84977 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00025 24538 26181 EPTA 0/0 100.0 99.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 87175 90768 EVGS 0/0 100.0 99.9 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00020 31791 32519 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00020 30599 31423 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00034 5364 5777 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00060 9569 10246 KDPE 0/0 100.0 99.1 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00068 3015 3404 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00068 2567 3001 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 2389 3621 MDFA 0/0 100.0 99.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00026 28406 29653 MDTA 0/0 100.0 99.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00026 29653 32775 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00026 32776 35853 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00020 36020 37177 MDTE 0/0 100.0 99.9 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00020 32882 35995 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00073 2961 4187 MDTG 0/0 100.0 99.7 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00007 127619 128827 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00031 19376 19705 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00031 19692 20057 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00023 34638 36011 MDTK 0/0 100.0 98.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00017 71160 72391 MDTM 1/1 99.9 96.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00014 5198 6229 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00014 6229 8280 MDTO 0/0 100.0 99.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00014 8277 9743 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00001 206992 207468 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00009 50809 52557 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00040 32107 32439 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00016 34560 36461 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 145408 146712 PBP4B 0/0 100.0 99.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00019 15348 16316 PMRF 0/0 100.0 99.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00049 11694 12350 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00017 23036 23905 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00014 31811 32133 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00049 23969 24784 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00049 20321 21566 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00083 3214 4488 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00019 74578 76221 YOGI 0/0 100.0 99.7 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID068
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 8359 9234 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00047 3417 4277 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00078 183 665 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00029 30138 31370 mdf(A)_1 0/0 100.0 99.8 Y08743 mdf(A)
contig00047 13875 14531 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00005 109476 110291 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00047 835 2081 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 74183 77332 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 150847 153960 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00023 65865 66686 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00025 40179 40901 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00025 38779 40182 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00022 61323 62696 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15261 15893 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00047 8359 9234 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00078 183 665 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00019 89658 90830 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00019 90847 92385 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00014 106777 107832 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00019 89001 89531 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00014 105239 106777 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00003 178034 179677 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 72967 74160 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 134679 135812 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00027 59 1363 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 162299 163456 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00029 30138 31370 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00057 5607 6221 evgA 0/0 100.0 98.5 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00057 2009 5602 evgS 0/0 100.0 95.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00034 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00034 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00032 5379 5792 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 8266 8943 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 47772 48155 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00025 29919 31166 mdtA 0/0 100.0 97.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00025 31166 34288 mdtB 0/0 100.0 97.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00025 34289 37366 mdtC 0/0 100.0 98.4 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00034 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00034 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00007 18396 19622 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00007 28251 29459 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00020 71909 73141 mdtM 0/0 100.0 96.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00017 10879 11910 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00017 11910 13961 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00017 13958 15424 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 129685 130161 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00006 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00014 1887 2855 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00047 13875 14531 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00005 109476 110291 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00047 3417 4277 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00047 835 2081 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00030 43942 45429 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00010 56579 58222 yojI 0/0 100.0 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00027 59 1363 (Bla)AmpC1_Ecoli 0/0 100 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00003 134679 135812 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 162299 163456 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00047 8359 9234 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00047 3417 4277 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00012 60354 62255 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00047 13875 14531 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00005 109476 110291 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00047 835 2109 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00047 154 804 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00078 183 656 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 8359 9234 blaCTX-M-15 0/0 100 100 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00003 134679 135812 blaEC 0/0 100 100 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00047 3417 4277 blaTEM-1 0/0 100 100 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00078 183 656 dfrA14 0/0 100 100 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00047 13875 14531 qnrS1 0/0 100 100 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00005 109476 110291 sul2 0/0 100 100 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00047 910 2109 tet(A) 0/0 100 100 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 72967 74160 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 74183 77332 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 150847 153960 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 134679 135812 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00002 162299 163456 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00025 15659 17511 ASMA 0/0 100.0 96.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00023 65865 66686 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00025 40179 40901 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00025 38779 40182 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00010 84009 85199 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 60628 61326 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00022 61323 62696 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15261 15893 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00064 3523 4465 CTX 0/0 100.0 98.1 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00078 183 656 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00019 89658 90830 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00019 90847 92385 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00011 75582 76772 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00014 106777 107940 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00019 89001 89531 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00014 105239 106777 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00003 178034 179677 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00057 2009 5602 EVGS 0/0 100.0 97.0 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00034 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00034 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00032 5379 5792 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 8266 8943 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 47766 48155 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 47318 47752 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00029 30138 31370 MDFA 0/0 100.0 99.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00025 29919 31166 MDTA 0/0 100.0 97.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00025 31166 34288 MDTB 0/0 100.0 97.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00025 34289 37366 MDTC 0/0 100.0 98.4 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00034 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00034 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00007 18396 19622 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00007 28251 29459 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 383533 383862 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 383181 383546 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 311779 313152 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00020 71909 73141 MDTM 0/0 100.0 96.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00017 10879 11910 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00017 11910 13961 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00017 13958 15424 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00005 129685 130161 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00006 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 60354 62255 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00027 59 1363 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00014 1887 2855 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00047 13875 14531 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00020 11927 12796 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00017 37040 37363 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00005 109476 110291 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00047 3399 4644 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00047 835 2109 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00010 56579 58222 YOGI 0/0 100.0 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID073I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1552 2355 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00078 716 1552 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00059 11102 11977 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00059 14798 15658 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00094 179 661 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00005 65535 66767 mdf(A)_1 0/0 100.0 99.3 Y08743 mdf(A)
contig00059 5805 6461 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00078 2416 3231 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00059 16994 18240 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 89518 92667 acrB 0/0 100.0 99.4 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 135398 138511 acrD 0/0 100.0 99.3 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00006 140026 141183 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00006 141195 144299 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00006 138965 139627 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00078 1552 2355 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00078 716 1552 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00018 12213 13034 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00045 29538 30260 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00045 28138 29541 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 61701 63074 cpxA 0/0 100.0 98.7 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00013 15723 16355 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00059 11102 11977 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00094 179 661 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00009 56609 57781 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00009 57798 59336 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00017 84975 86030 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00009 55952 56482 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00017 83437 84975 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00032 18804 20447 eptA 0/0 100.0 99.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 92690 93883 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 131058 132191 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 174991 176295 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 3503 4660 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00048 30592 30924 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00005 65535 66767 Escherichia_coli_mdfA 0/0 100.0 97.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 230782 234375 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00090 89 3682 evgS 0/0 100.0 95.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00026 31790 32518 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00026 30598 31422 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00041 5323 5736 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00036 43812 44489 kdpE 0/0 100.0 99.1 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00066 3021 3404 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00045 19278 20525 mdtA 0/0 100.0 99.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00045 20525 23647 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00045 23648 26725 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00026 36019 37176 mdtE 0/0 100.0 99.9 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00026 32881 35994 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00056 2961 4187 mdtG 0/0 100.0 99.7 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00004 5672 6880 mdtH 0/0 100.0 98.4 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00016 69851 71082 mdtM 1/1 99.9 96.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00014 5198 6229 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00014 6229 8280 mdtO 0/0 100.0 99.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00014 8277 9743 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 114244 114720 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00002 125280 127028 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00021 15347 16315 pmrF 0/0 100.0 99.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00059 5805 6461 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00078 2416 3231 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00059 14798 15658 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00059 16994 18240 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00024 60816 62303 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00021 74577 76220 yojI 0/0 100.0 99.7 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1552 2355 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00078 716 1552 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 174991 176295 (Bla)AmpC1_Ecoli 0/0 100 99.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00007 131058 132191 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 3503 4660 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00059 11102 11977 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00059 14798 15658 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00015 34688 36589 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00059 5805 6461 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00078 2416 3231 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00059 16966 18240 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00094 179 652 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1552 2379 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00078 716 1552 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00059 11102 11977 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00007 131058 132191 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00059 14798 15658 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00094 179 652 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00059 5805 6461 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00078 2416 3231 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00059 16966 18165 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 92690 93883 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 89518 92667 ACRB 0/0 100.0 99.4 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 135398 138511 ACRD 0/0 100.0 99.3 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00006 140026 141183 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00006 141195 144299 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00006 138965 139627 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 3503 4660 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00078 1552 2379 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00078 716 1552 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00045 5081 6934 ASMA 0/0 100.0 96.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00018 12213 13034 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00045 29538 30260 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00045 28138 29541 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00022 48987 50177 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00007 131058 132191 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 61006 61704 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 61701 63074 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 15723 16355 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00001 166242 167182 CTX 0/0 99.8 91.8 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00094 179 652 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00009 56609 57781 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00009 57798 59336 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00060 14216 15406 EMRD 0/0 100.0 99.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00017 84975 86138 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00009 55952 56482 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00017 83437 84975 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00032 18804 20447 EPTA 0/0 100.0 99.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 230782 234375 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00090 89 3682 EVGS 0/0 100.0 97.0 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00026 31790 32518 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00026 30598 31422 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00041 5323 5736 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00036 43812 44489 KDPE 0/0 100.0 99.1 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00066 3015 3404 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00066 2567 3001 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 65535 66767 MDFA 0/0 100.0 99.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00045 19278 20525 MDTA 0/0 100.0 99.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00045 20525 23647 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00045 23648 26725 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00026 36019 37176 MDTE 0/0 100.0 99.9 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00026 32881 35994 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00056 2961 4187 MDTG 0/0 100.0 99.7 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00004 5672 6880 MDTH 0/0 100.0 98.4 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00030 35419 35748 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00030 35067 35432 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00028 34496 35869 MDTK 0/0 100.0 98.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00016 69851 71082 MDTM 1/1 99.9 96.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00014 5198 6229 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00014 6229 8280 MDTO 0/0 100.0 99.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00014 8277 9743 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00001 114244 114720 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00002 125280 127028 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00048 30592 30924 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00015 34688 36589 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 174991 176295 PBP4B 0/0 100.0 99.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00021 15347 16315 PMRF 0/0 100.0 99.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00059 5805 6461 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00016 21727 22596 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00014 31811 32133 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00078 2416 3231 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00059 14431 15676 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00059 16966 18240 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00021 74577 76220 YOGI 0/0 100.0 99.7 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID077
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1409 2212 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00051 573 1409 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00044 1838 2713 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00047 6403 7263 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00057 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00022 64602 65834 mdf(A)_1 0/0 100.0 99.1 Y08743 mdf(A)
contig00047 1 916 mph(A)_2 1/1 99.3 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00044 7354 8010 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00051 2273 3088 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00053 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00020 85157 86314 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 86326 89430 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 84096 84758 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00051 1409 2212 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00051 573 1409 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00014 115493 116215 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00014 114093 115496 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00030 22613 23986 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00044 1838 2713 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00025 57060 58232 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00025 58249 59787 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00010 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00025 56403 56933 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00010 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00027 18412 20055 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00012 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 92232 93365 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00010 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00012 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00034 3107 3439 Escherichia_coli_emrE 0/0 100.0 92.5 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00022 64602 65834 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00010 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00010 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00005 190046 190774 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00005 191142 191966 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 201604 202017 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00006 8189 8861 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00009 119325 119708 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00014 105233 106480 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00014 106480 109602 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00014 109603 112680 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00005 185388 186545 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00005 186570 189683 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 188462 189688 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 198319 199527 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00016 82731 83963 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00019 4218 5249 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00019 5249 7300 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00019 7297 8763 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00047 11 916 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00010 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 51626 53374 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00013 52356 53324 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00044 7354 8010 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00051 2273 3088 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00047 6403 7263 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00053 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00013 3695 5338 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1409 2212 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00051 573 1409 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00010 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00017 92232 93365 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00012 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00044 1838 2713 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00047 6403 7263 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00006 60650 62551 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00044 7354 8010 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00047 11 916 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00051 2273 3088 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00053 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00057 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1409 2236 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00051 573 1409 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00044 1838 2713 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00017 92232 93365 blaEC-13 0/0 100.0 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00047 6403 7263 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00057 182 655 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00047 1 916 mph(A) 1/1 99.3 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00044 7354 8010 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00051 2273 3088 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00053 1648 2847 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00012 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00010 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00020 85157 86314 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00020 86326 89430 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00020 84096 84758 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00012 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00051 1409 2236 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00051 573 1409 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00014 90978 92830 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00014 115493 116215 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00014 114093 115496 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00024 21479 22669 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00017 92232 93365 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00030 21918 22616 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00030 22613 23986 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00057 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00025 57060 58232 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00025 58249 59787 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00008 92225 93415 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00010 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00025 56403 56933 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00010 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00027 18412 20055 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00010 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00005 190046 190774 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00005 191142 191966 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 201604 202017 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00006 8189 8861 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00009 119325 119714 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00009 119728 120162 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00022 64602 65834 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00014 105233 106480 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00014 106480 109602 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00014 109603 112680 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00005 185388 186545 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00005 186570 189683 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 188462 189688 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 198319 199527 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00009 35311 35640 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00009 34959 35324 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 34530 35903 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00016 82731 83963 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00019 4218 5249 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00019 5249 7300 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00019 7297 8763 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00047 1 916 MPHA 1/1 99.3 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00010 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 51626 53374 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00034 3107 3439 MVRC 0/0 100.0 92.5 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00006 60650 62551 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00010 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00013 52356 53324 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00044 7354 8010 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00016 11978 12847 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 30380 30703 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00051 2273 3088 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00047 6385 7630 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00053 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00013 3695 5338 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID081I
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1585 2388 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00103 749 1585 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00036 35508 36383 blaCTX-M-55_1 0/0 100.0 100.0 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00075 1306 2445 blaDHA-1_1 0/0 100.0 100.0 Y16410 blaDHA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic_acid
contig00064 9630 10490 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00177 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00158 460 933 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00125 200 773 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00117 262 1025 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00011 56271 57503 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00162 1 882 mph(A)_1 0/0 97.3 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00075 6569 7213 qnrB4_1 0/0 100.0 100.0 DQ303921 qnrB4 Ciprofloxacin
contig00064 3612 4268 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00082 223 1089 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00103 2449 3264 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00064 11826 13072 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 133793 136942 acrB 0/0 100.0 99.5 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 15665 18778 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00044 8641 9798 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00044 5525 8629 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00044 10197 10859 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00103 1585 2388 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00103 749 1585 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00001 301816 302637 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00027 9118 9840 baeR 0/0 100.0 97.8 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00027 9837 11240 baeS 0/0 100.0 99.3 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00026 22842 24215 cpxA 0/0 100.0 98.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 14930 15562 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00036 35508 36383 CTX-M-55 0/0 100.0 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00177 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00158 460 933 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00125 300 773 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00075 1306 2445 DHA-1 0/0 100.0 100.0 Y16410.1:986-2126 DHA-1 is a class C beta-lactamase found in Morganella morganii and Salmonella enterica cephalosporin, cephamycin
contig00016 26008 27180 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00016 27197 28735 emrB 0/0 100.0 99.3 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00058 16778 17833 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00016 25351 25881 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00058 15240 16778 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00052 1560 3203 eptA 0/0 100.0 99.8 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00117 288 1033 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00003 136965 138158 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00019 48520 49653 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00013 50176 51480 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.4 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00003 47670 48827 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00104 2538 2870 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00011 56271 57503 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00013 110122 113715 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00045 2243 2971 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00045 1051 1875 gadX 0/0 100.0 97.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00017 22891 23304 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00002 95589 96266 kdpE 0/0 100.0 99.3 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00039 13399 13782 marA 0/0 100.0 99.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00027 18853 20100 mdtA 0/0 100.0 97.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00027 15731 18853 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00027 12653 15730 mdtC 0/0 100.0 97.6 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00045 6472 7629 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00045 3334 6447 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00022 72668 73894 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00022 62829 64037 mdtH 0/0 100.0 97.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00020 77 1108 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00020 1108 3159 mdtO 0/0 100.0 99.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00020 3156 4622 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00162 1 882 mphA 0/0 97.3 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00012 5046 5522 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00009 71622 73370 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 102028 102996 pmrF 0/0 100.0 99.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00075 6566 7213 QnrB4 0/0 100.0 100.0 DQ303921:0-648 QnrB4 is a plasmid-mediated quinolone resistance protein found in Escherichia coli fluoroquinolone
contig00064 3612 4268 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00082 250 1089 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00103 2449 3264 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00064 9630 10490 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00064 11826 13072 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00001 277953 279440 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 49335 50978 yojI 0/0 100.0 98.7 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1585 2388 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00103 749 1585 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00013 50176 51480 (Bla)AmpC1_Ecoli 0/0 100.0 99.4 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00019 48520 49653 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 47670 48827 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00036 35508 36383 (Bla)blaCTX-M-55 0/0 100.0 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00075 1306 2445 (Bla)blaDHA-1 0/0 100.0 100.0 HM193083:987-2126 (Bla)blaDHA-1 NA
contig00064 9630 10490 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00002 150013 151914 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00064 3612 4268 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00075 6566 7213 (Flq)qnrB4 0/0 100.0 100.0 DQ303921:4-648 (Flq)qnrB4 NA
contig00117 288 1025 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00162 1 882 (MLS)mph(A) 0/0 97.3 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00082 250 1089 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00103 2449 3264 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00064 11798 13072 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00177 182 655 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
contig00158 460 933 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
contig00125 300 773 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1585 2412 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00103 749 1585 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00036 35508 36383 blaCTX-M-55 0/0 100.0 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00075 1306 2445 blaDHA-1 0/0 100.0 100.0 NG_049055.1 class C beta-lactamase DHA-1 CEPHALOSPORIN
contig00019 48520 49653 blaEC-15 0/0 100.0 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00064 9630 10490 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00177 182 655 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00158 460 933 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00125 300 773 dfrA7 0/0 100.0 100.0 NG_047737.1 trimethoprim-resistant dihydrofolate reductase DfrA7 TRIMETHOPRIM
contig00117 288 1025 erm(B) 0/0 100.0 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00162 1 882 mph(A) 0/0 97.3 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00075 6569 7213 qnrB4 0/0 100.0 100.0 NG_050502.1 quinolone resistance pentapeptide repeat protein QnrB4 QUINOLONE
contig00064 3612 4268 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00082 250 1089 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00103 2449 3264 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00064 11798 12997 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 136965 138158 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 133793 136942 ACRB 0/0 100.0 99.5 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00013 15665 18778 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00044 8641 9798 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00044 5525 8629 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00044 10197 10859 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00003 47670 48827 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00103 1585 2412 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00103 749 1585 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00027 32054 33906 ASMA 0/0 100.0 96.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00001 301816 302637 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00027 9118 9840 BAER 0/0 100.0 97.8 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00027 9837 11240 BAES 0/0 100.0 99.3 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 22872 24062 BCR 0/0 100.0 96.7 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00019 48520 49653 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00026 22147 22845 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00026 22842 24215 CPXAR 0/0 100.0 98.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 14930 15562 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00036 35262 36754 CTX 1/7 100.0 99.3 MEG_2421 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00125 300 773 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00158 460 933 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00177 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00075 1306 2445 DHA 0/0 100.0 100.0 MEG_2585 Drugs:betalactams:Class_C_betalactamases:DHA NA
contig00016 26008 27180 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00016 27197 28735 EMRB 0/0 100.0 99.3 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 92158 93348 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00058 16778 17941 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00016 25351 25881 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00058 15240 16778 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00052 1560 3203 EPTA 0/0 100.0 99.8 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00117 262 1025 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00013 110122 113715 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00045 2243 2971 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00045 1051 1875 GADX 0/0 100.0 97.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00017 22891 23304 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00002 95589 96266 KDPE 0/0 100.0 99.3 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00039 13393 13782 MARA 0/0 100.0 99.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00039 12945 13379 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00011 56271 57503 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00027 18853 20100 MDTA 0/0 100.0 97.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00027 15731 18853 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00027 12653 15730 MDTC 0/0 100.0 97.6 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00045 6472 7629 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00045 3334 6447 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00022 72668 73894 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00022 62829 64037 MDTH 0/0 100.0 97.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00034 21537 21866 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00034 21853 22218 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00007 113635 115008 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00020 77 1108 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00020 1108 3159 MDTO 0/0 100.0 99.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00020 3156 4622 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00162 1 882 MPHA 0/0 97.3 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00012 5046 5522 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00009 71622 73370 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00104 2538 2870 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00002 150013 151914 PBP2 0/0 100.0 99.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00013 50176 51480 PBP4B 0/0 100.0 99.4 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 102028 102996 PMRF 0/0 100.0 99.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00075 6566 7213 QNRB 0/0 100.0 100.0 MEG_5932 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00064 3612 4268 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00023 57085 57954 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00020 26691 27013 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00082 249 1216 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00103 2449 3264 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00064 9263 10508 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00064 11798 13072 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00004 49335 50978 YOGI 0/0 100.0 98.7 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID086II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00050 1303 2091 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00061 971 1774 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00061 135 971 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00053 2407 3282 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00050 699 1172 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 29919 31151 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00077 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00050 2611 3477 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00061 1835 2650 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00062 1435 2681 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00050 1303 2091 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 410564 413713 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 99480 102593 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00011 149301 150458 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 150470 153574 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 148240 148902 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00061 971 1774 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00061 135 971 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 336794 337515 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 337512 338915 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00016 66576 67943 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00012 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00053 2407 3282 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00050 699 1172 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00025 60096 61268 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00025 61285 62823 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 5710 6765 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00025 59439 59969 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 4172 5710 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00008 146399 148042 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 409348 410541 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 48073 49206 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 498463 499620 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00013 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00001 29919 31151 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 7289 7903 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 7908 11501 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00029 1556 2284 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00029 363 1187 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00020 39527 39940 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00001 185272 185944 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 289457 289840 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 346528 347775 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 343406 346528 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 340328 343405 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00029 5785 6942 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00029 2647 5760 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00010 91831 93057 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00010 81994 83202 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 306754 307986 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00008 116126 117157 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00008 114075 116126 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 112612 114078 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00077 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00015 45415 47163 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 102789 103757 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00050 2638 3477 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00061 1835 2650 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00062 1435 2681 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 400871 402037 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 161962 163605 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00050 1303 2091 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00061 971 1774 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00061 135 971 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00022 48073 49206 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 498463 499620 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00053 2407 3282 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00001 244490 246391 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00077 69 974 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00050 2638 3477 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00061 1835 2650 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00062 1407 2681 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00050 699 1172 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00050 1303 2091 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00061 971 1798 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00061 135 971 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00053 2407 3282 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00022 48073 49206 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00050 699 1172 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00077 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00050 2638 3477 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00061 1835 2650 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00062 1407 2606 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00066 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00001 409348 410541 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 410564 413713 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 99480 102593 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00011 149301 150458 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00011 150470 153574 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00011 148240 148902 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 498463 499620 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00050 1303 2091 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00061 971 1798 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00061 135 971 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 359435 361287 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 336794 337515 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 337512 338915 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 187238 188428 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 48073 49206 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00016 65881 66579 CPXAR 0/0 100.0 98.0 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 66576 67943 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00050 699 1172 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00025 60096 61268 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00025 61285 62823 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00005 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 5710 6873 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00025 59439 59969 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 4172 5710 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00008 146399 148042 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 7908 11501 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00029 1556 2284 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00029 363 1187 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00020 39527 39940 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00001 185272 185944 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 289457 289846 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 289861 290295 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 29919 31151 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 346528 347775 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 343406 346528 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 340328 343405 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00029 5785 6942 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00029 2647 5760 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00010 91831 93057 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00010 81994 83202 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 258563 258892 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 258211 258576 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 306754 307986 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00008 116126 117157 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00008 114075 116126 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00008 112612 114078 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00077 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00015 45415 47163 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00001 244490 246391 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 102789 103757 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 247278 248147 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00008 84259 84581 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00050 2637 3604 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00061 1835 2650 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00062 1407 2681 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 400871 402037 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 161962 163605 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID088
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 1696 2556 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00085 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00070 1702 2490 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00062 5421 6200 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00062 4585 5421 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00068 1587 2462 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00085 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00070 2621 3094 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 151006 152238 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00096 68 989 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00070 316 1182 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00062 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00063 1998 3203 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00085 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00070 1702 2490 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 38756 41905 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 148083 151196 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00059 5854 8958 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00034 602 1264 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00062 5421 6200 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00062 4585 5421 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00004 70314 71133 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00027 57252 57974 baeR 0/0 100.0 99.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00027 55852 57255 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00018 25022 26395 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15377 16009 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00068 1587 2462 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00070 2621 3094 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 58703 59875 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 59892 61430 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 178467 179522 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 58046 58576 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 176929 178467 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00008 81599 83242 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 37540 38733 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 38238 39371 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00007 183082 184386 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 126872 128029 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 151006 152238 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 180046 180660 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 180665 184258 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00037 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00037 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00033 5443 5856 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00011 8563 9240 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00023 30978 31361 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00027 46992 48239 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00027 48239 51361 mdtB 0/0 100.0 99.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00027 51362 54439 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00037 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00037 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00032 29396 30622 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00032 19560 20768 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00019 70066 71298 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00008 112980 114011 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00008 114011 116062 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 116059 117525 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00096 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00007 126902 127376 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 233954 235702 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00085 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00005 63954 64922 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00070 316 1155 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00062 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00063 1998 3203 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00004 46547 48034 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00005 2079 3722 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 1696 2556 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00070 1702 2490 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00062 5421 6200 (AGly)strA 0/0 97 99.9 AB366441:22458-23261 (AGly)strA NA
contig00062 4585 5421 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00007 183082 184386 (Bla)AmpC1_Ecoli 0/0 100 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00008 38238 39371 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 126872 128029 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00068 1587 2462 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00085 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00011 60650 62551 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00096 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00070 316 1155 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00062 85 900 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00063 1998 3203 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00070 2621 3094 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 1696 2556 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00085 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00070 1702 2490 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00062 5421 6200 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00062 4585 5421 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00068 1587 2462 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00008 38238 39371 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00085 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00070 2621 3094 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00096 68 989 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00070 316 1155 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00062 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00063 1998 3203 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00080 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00002 37540 38733 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 38756 41905 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00007 148083 151196 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00059 5854 8958 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00034 602 1264 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 126872 128029 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00070 1702 2490 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00062 5421 6200 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00062 4585 5421 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00027 32874 34726 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 70314 71133 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00027 57252 57974 BAER 0/0 100.0 99.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00027 55852 57255 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00015 67338 68528 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00008 38238 39371 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00018 24327 25025 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00018 25022 26395 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15377 16009 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00099 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00070 2621 3094 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 58703 59875 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 59892 61430 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00035 43174 44364 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 178467 179630 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 58046 58576 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 176929 178467 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00008 81599 83242 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 180665 184258 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00037 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00037 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00033 5443 5856 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00011 8563 9240 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00023 30972 31361 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00023 30524 30958 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 151006 152238 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00027 46992 48239 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00027 48239 51361 MDTB 0/0 100.0 99.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00027 51362 54439 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00037 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00037 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00032 29396 30622 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00032 19560 20768 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00023 63754 64083 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00023 64070 64435 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00021 26477 27850 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00019 70066 71298 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00008 112980 114011 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00008 114011 116062 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00008 116059 117525 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00096 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00007 126902 127376 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 233954 235702 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00085 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00011 60650 62551 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00007 183082 184386 PBP4B 0/0 100.0 95.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00005 63954 64922 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00019 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00008 139141 139464 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00070 189 1156 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00062 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00063 1998 3203 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00063 3997 4413 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00005 2079 3722 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID092
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01130 1694 2554 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig01320 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00354 2651 3439 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig01566 941 1744 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig01566 105 941 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00031 20968 22119 blaADC-25_1 0/0 100.0 97.0 EF016355 blaADC-25
contig00439 2211 3086 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig02022 93 905 blaNDM-1_1 0/0 100.0 100.0 FN396876 blaNDM-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam
contig01320 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig01535 180 1004 blaOXA-70_1 0/0 100.0 100.0 AY750912 blaOXA-70
contig00354 2047 2520 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig02107 42 551 dfrA8_1 0/0 100.0 100.0 U10186 dfrA8 Trimethoprim
contig01093 596 1828 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00252 6770 7691 mph(A)_2 1/1 100.0 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00332 5131 5787 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00354 3959 4825 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig02150 327 1139 sul2_2 0/0 99.6 100.0 AY034138 sul2 Sulfamethoxazole
contig01230 1069 2274 tet(B)_1 0/0 100.0 100.0 AP000342 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01130 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig01320 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00354 2651 3439 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00006 19310 20656 abeM 0/0 100.0 98.9 AB204810:186-1533 AbeM is an multidrug efflux pump found in Acinetobacter baumannii. acridine_dye, fluoroquinolone, triclosan
contig00004 483 812 abeS 0/0 100.0 98.5 CP001172.1:1249348-1249018 AbeS in an efflux pump of the SMR family of transporters found in Acinetobacter baumannii. aminocoumarin, macrolide
contig00789 2432 3671 Acinetobacter_baumannii_AbaF 0/0 96.1 98.5 CP000521.1:1558523-1557233 Expression of abaF in E. coli resulted in increased resistance to fosfomycin. fosfomycin
contig00031 20968 22119 Acinetobacter_baumannii_AmpC_beta-lactamase 0/0 100.0 98.3 CP001182.1:2873299-2874451 A class C beta-lactamase found in Acinetobacter baumannii that confers resistance to piperacillin and cefepime. cephalosporin, penam
contig00212 7818 9296 Acinetobacter_baumannii_AmvA 0/0 100.0 97.1 FJ911554.1:176-1655 AmvA has 14 alpha-helical transmembrane segments qualifying it as a member of the DHA2 transporter family of the major facilitator superfamily (MFS). When AmvA was expressed in E. coli the cells had at least four-fold decreased susceptibility to erythromycin acridine orange acriflavine deoxycholate and methyl viologen. AmvA from the AC0037 strain of A. baumannii was tested. acridine_dye, macrolide
contig00678 384 3488 acrF 0/0 100.0 98.7 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig02064 607 1207 acrS 1/1 90.7 99.2 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig02965 104 705 acrS 0/0 90.8 97.8 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00956 1082 2299 adeG 1/3 99.8 96.9 CT025800.2:0-1221 AdeG is the inner membrane transporter of the AdeFGH multidrug efflux complex. fluoroquinolone, tetracycline
contig00806 37 1488 adeH 0/0 100.0 98.3 CT025802.2:0-1452 AdeH is the outer membrane channel protein of the AdeFGH multidrug efflux complex. fluoroquinolone, tetracycline
contig00017 19701 20951 adeI 0/0 100.0 99.8 CP001182.2:3283426-3284677 AdeI is the membrane fusion protein of the AdeIJK multidrug efflux complex. carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline
contig00017 20964 24140 adeJ 0/0 100.0 99.7 AY769962:2434-5611 AdeJ is a RND efflux protein that acts as the inner membrane transporter of the AdeIJK efflux complex. It has 57% identity with E. coli AcrB. carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline
contig00017 24140 25594 adeK 0/0 100.0 98.8 AY769962:5610-7065 AdeK is the outer membrane factor protein in the adeIJK multidrug efflux complex. carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline
contig00952 1191 1844 adeN 0/0 100.0 98.6 KF147862:0-654 AdeN is a repressor of AdeIJK a RND-type efflux pump in Acinetobacter baumannii. Its inactivation increases expression of AdeJ. carbapenem, cephalosporin, diaminopyrimidine, fluoroquinolone, lincosamide, macrolide, penem, phenicol, rifamycin, tetracycline
contig01566 941 1744 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig01566 105 941 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00055 17677 18496 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig01357 1167 1986 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00314 1 693 baeR 0/0 95.8 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00957 1 1398 baeS 0/0 99.6 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig01504 891 1523 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00439 2211 3086 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig02022 909 1243 determinant_of_bleomycin_resistance 0/0 91.5 100.0 KC503911.1:9883-10249 A novel bleomycin resistance protein encoded by a metallo-beta-lactamase-associated ble gene. Expression of BRP(MBL) confers resistance to bleomycin and bleomycin-like antibiotics in Enterobacteriaceae and Acinetobacter where it is co-expressed with an MBL and controlled by the same promoter region. glycopeptide
contig00354 2047 2520 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig02107 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00604 3241 4413 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00604 1686 3224 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00779 2371 3564 Escherichia_coli_acrA 0/0 100.0 99.7 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00898 305 1438 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00299 1845 3149 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.7 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig01499 690 1847 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00032 9088 9420 Escherichia_coli_emrE 0/0 100.0 98.8 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01283 330 662 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01093 596 1828 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00751 1258 1872 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig02978 1 579 evgA 0/0 94.2 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01240 527 1351 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01475 90 914 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00403 154 567 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00204 4680 5352 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00233 7551 7934 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00287 5512 6759 mdtA 0/0 100.0 99.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig01965 249 1301 mdtE 0/0 90.9 99.6 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00981 152 1360 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00145 2274 3506 mdtM 0/0 100.0 96.1 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig01950 1 1154 mdtM 0/0 93.6 99.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00338 2306 3337 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00338 3337 5388 mdtO 0/0 100.0 98.2 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00338 5385 6851 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00252 6786 7691 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00629 2760 3236 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig02022 93 905 NDM-1 0/0 100.0 100.0 FN396876:3219-2406 NDM-1 is a metallo-beta-lactamase isolated from Klebsiella pneumoniae with nearly complete resistance to all beta-lactam antibiotics. carbapenem, cephalosporin, cephamycin, penam
contig01320 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig01535 180 1004 OXA-70 0/0 100.0 100.0 AY750912:0-825 OXA-70 is a beta-lactamase found in A. baumannii cephalosporin, penam
contig01429 167 1135 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00332 5131 5787 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00354 3986 4825 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig02150 327 1139 sul2 0/0 99.6 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig01230 1069 2274 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig01779 1 1435 tolC 0/0 96.4 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00516 3268 4911 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01130 1694 2554 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00354 2651 3439 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00022 23822 24609 (AGly)ant(3’’)-IIa 0/0 99.9 99.1 NG_054648:101-889 (AGly)ant(3’’)-IIa NA
contig01566 941 1744 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig01566 105 941 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00299 1845 3149 (Bla)AmpC1_Ecoli 0/0 100.0 96.7 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00898 305 1438 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig01499 690 1847 (Bla)ampH_Ecoli 0/0 100.0 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00031 20959 22119 (Bla)beta-lactamase_class-C 0/0 97.5 98.3 NC_010410:1184557-1185747 (Bla)beta-lactamase_class-C NA
contig00439 2211 3086 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig02022 93 905 (Bla)blaNDM-1 0/0 100.0 100.0 JQ080305:1-813 (Bla)blaNDM-1 NA
contig01320 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig01535 180 1004 (Bla)blaOXA-70 0/0 100.0 100.0 AY750912:1-825 (Bla)blaOXA-70 NA
contig01807 1 668 (Bla)Mbl 0/0 96.0 99.8 NC_010410:c1997136-1996441 (Bla)Mbl NA
contig00334 1 1809 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 95.1 99.3 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00021 9628 10590 (Bla)Zn-dependent_hydrolase 0/0 100.0 98.8 NC_010410:882015-882977 (Bla)Zn-dependent_hydrolase NA
contig00332 5131 5787 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00252 6786 7691 (MLS)mph(A) 0/0 100.0 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00354 3986 4825 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig02150 327 1139 (Sul)sul2 0/0 99.6 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig01230 1069 2274 (Tet)tetB 0/0 100.0 99.8 AB089594:1-1206 (Tet)tetB NA
contig00354 2047 2520 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
contig02107 42 551 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01130 1694 2554 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig01320 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00354 2651 3439 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00022 23822 24609 ant(3’’)-IIa 0/0 99.9 99.1 NG_054648.1 aminoglycoside nucleotidyltransferase ANT(3’’)-IIa SPECTINOMYCIN, STREPTOMYCIN
contig01566 941 1768 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig01566 105 941 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00031 20968 22119 blaADC-203 0/0 100.0 100.0 NG_066483.1 class C beta-lactamase ADC-203 CEPHALOSPORIN
contig00439 2211 3086 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00898 305 1438 blaEC-18 0/0 100.0 99.2 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig02022 93 905 blaNDM-1 0/0 100.0 100.0 NG_049326.1 subclass B1 metallo-beta-lactamase NDM-1 CARBAPENEM
contig01320 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig01535 180 1004 blaOXA-70 0/0 100.0 100.0 NG_049811.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-70 CARBAPENEM
contig02022 909 1243 ble-MBL 0/0 91.5 100.0 NG_047559.1 bleomycin binding protein Ble-MBL BLEOMYCIN
contig00354 2047 2520 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig02107 42 551 dfrA8 0/0 100.0 100.0 NG_047741.1 trimethoprim-resistant dihydrofolate reductase DfrA8 TRIMETHOPRIM
contig00252 6770 7691 mph(A) 1/1 100.0 99.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00332 5131 5787 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00354 3986 4825 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig02150 327 1139 sul2 0/0 99.6 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig01230 1069 2274 tet(B) 0/0 100.0 100.0 NG_048161.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01130 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00789 2432 3671 ABAF 0/0 96.1 98.5 MEG_369 Drugs:Fosfomycin:Fosfomycin_MFS_efflux_pump:ABAF NA
contig00006 19310 20656 ABEM 0/0 100.0 98.9 MEG_372 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:ABEM NA
contig00004 483 812 ABES 0/0 100.0 100.0 MEG_377 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:ABES NA
contig00779 2371 3564 ACRA 0/0 100.0 99.7 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00678 384 3488 ACRF 0/0 100.0 98.7 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig02064 607 1207 ACRS 1/1 90.7 99.2 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig02965 104 705 ACRS 0/0 90.8 97.8 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00031 20959 22119 ADC 0/0 97.5 98.3 MEG_629 Drugs:betalactams:Class_C_betalactamases:ADC NA
contig00806 37 1488 ADEH 0/0 100.0 98.3 MEG_685 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEH NA
contig00017 19701 20951 ADEI 0/0 100.0 100.0 MEG_688 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEI NA
contig00017 20964 24140 ADEJ 0/0 100.0 99.7 MEG_692 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEJ NA
contig00017 24140 25594 ADEK 0/0 100.0 100.0 MEG_695 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADEK NA
contig00952 1191 1844 ADEN 0/0 100.0 99.1 MEG_701 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ADEN NA
contig00046 15816 16532 ADET2 0/0 100.0 99.0 MEG_706 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ADET2 NA
contig01499 690 1847 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00212 7818 9296 AMVA 0/0 100.0 97.1 MEG_733 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:AMVA NA
contig00022 23822 24609 ANT3-DPRIME 0/0 99.9 99.1 MEG_899 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00354 2651 3439 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig01566 941 1768 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig01566 105 941 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00197 3062 4914 ASMA 0/0 100.0 98.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00055 17677 18496 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig01357 1167 1986 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00314 1 693 BAER 0/0 95.8 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00957 1 1398 BAES 0/0 99.6 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00367 4020 5210 BCR 0/0 100.0 96.8 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00898 305 1438 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig02022 909 1243 BRP 0/0 91.5 100.0 MEG_1477 Drugs:Glycopeptides:Bleomycin_resistance_protein:BRP NA
contig01504 891 1523 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00354 2047 2520 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig02107 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00604 3241 4413 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00604 1686 3224 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig01671 461 1633 EMRD 0/0 98.5 99.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig01708 446 1578 EMRD 0/0 95.1 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig01240 527 1351 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01475 90 914 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00403 154 567 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00204 4680 5352 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00233 7551 7940 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00233 7954 8388 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig01093 596 1828 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00287 5512 6759 MDTA 0/0 100.0 99.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig01965 249 1301 MDTE 0/0 90.9 99.6 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00981 152 1360 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig01989 690 1019 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00450 3136 4509 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00145 2274 3506 MDTM 0/0 100.0 96.1 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig01950 1 1154 MDTM 0/0 93.6 99.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00338 2306 3337 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00338 3337 5388 MDTO 0/0 100.0 98.2 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00338 5385 6851 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00956 1082 2299 MEXE 0/0 100.0 99.0 MEG_3910 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MEXE NA
contig00457 4761 5750 MEXT 0/0 100.0 99.2 MEG_3934 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MEXT NA
contig00252 6770 7691 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00629 2760 3236 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00032 9088 9420 MVRC 0/0 100.0 98.8 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig01283 330 662 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig02022 93 905 NDM 0/0 100.0 100.0 MEG_4143 Drugs:betalactams:Class_B_betalactamases:NDM NA
contig01320 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig01535 98 1049 OXA 3/3 98.9 97.9 MEG_5236 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00334 1 1809 PBP2 0/0 95.1 99.3 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00299 1845 3149 PBP4B 0/0 100.0 96.7 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig01429 167 1135 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00332 5131 5787 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig01709 91 960 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01715 163 485 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00354 3985 4952 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig02150 327 1139 SULII 0/0 99.6 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig01230 1069 2274 TETB 0/0 100.0 100.0 MEG_7042 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00516 3268 4911 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID094LLFII
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00566 843 1646 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00566 7 843 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00264 2861 3736 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig01160 619 1250 catA1_1 0/0 95.8 99.8 V00622 catA1 Chloramphenicol
contig00205 564 1046 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00113 4302 5534 mdf(A)_1 0/0 100.0 98.1 Y08743 mdf(A)
contig00331 3505 4161 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00566 1707 2522 sul2_3 0/0 100.0 100.0 HQ840942 sul2 Sulfamethoxazole
contig00231 1997 3202 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00294 2128 4947 acrD 0/0 90.6 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00618 1383 2045 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00566 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00566 7 843 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00486 665 1484 bacA 0/0 99.8 96.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00050 6968 7689 baeR 0/0 99.9 97.9 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00050 5568 6971 baeS 0/0 100.0 96.4 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig01160 619 1250 catI 0/0 95.8 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00500 680 1312 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00264 2861 3736 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00205 564 1046 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig01128 205 1289 emrA 0/0 92.5 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00395 2417 3955 emrB 0/0 100.0 97.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00154 3665 4720 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00154 2127 3665 emrY 0/0 100.0 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00593 1 1515 eptA 0/0 92.2 98.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00359 1 1071 Escherichia_coli_ampC 0/0 94.4 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00599 1175 2479 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00093 4385 5542 Escherichia_coli_ampH 0/0 100.0 96.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00113 4302 5534 Escherichia_coli_mdfA 0/0 100.0 96.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00154 5244 5858 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00734 512 1336 gadX 0/0 100.0 94.3 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00801 154 567 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00032 7263 7940 kdpE 0/0 100.0 95.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00440 441 1688 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00050 1078 4155 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig01076 1 1119 mdtE 0/0 96.6 99.9 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig01034 286 1416 mdtG 0/0 92.2 98.6 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00965 414 1534 mdtH 0/0 92.7 97.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00152 2989 4020 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00152 4020 6071 mdtO 0/0 100.0 96.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00152 6068 7510 mdtP 0/0 98.4 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00174 2759 3233 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00153 3202 4950 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00159 4685 5653 pmrF 0/0 100.0 98.1 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00331 3505 4161 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00566 1707 2522 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00231 1997 3202 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00031 9824 10990 ugd 0/0 100.0 97.5 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00566 843 1646 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00566 7 843 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00599 1175 2479 (Bla)AmpC1_Ecoli 0/0 100.0 96.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00359 1 1071 (Bla)AmpC2_Ecoli 0/0 94.4 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00093 4385 5542 (Bla)ampH_Ecoli 0/0 100.0 96.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00264 2861 3736 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00331 3505 4161 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig01160 619 1250 (Phe)catA1 0/0 95.8 99.8 V00622:244-903 (Phe)catA1 NA
contig00566 1707 2522 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00231 1997 3202 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00205 564 1037 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00566 843 1670 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00566 7 843 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00264 2861 3736 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00359 1 1071 blaEC-8 0/0 94.4 98.3 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig01160 619 1250 catA1 0/0 95.8 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00205 564 1037 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00331 3505 4161 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00566 1707 2522 sul2 0/0 100.0 99.9 NG_048118.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00231 1997 3202 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00294 2128 4947 ACRD 0/0 90.6 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00618 1383 2045 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00093 4385 5542 AMPH 0/0 100.0 96.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00566 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00566 7 843 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00486 665 1484 BACA 0/0 99.8 96.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00050 6968 7689 BAER 0/0 99.9 97.9 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00050 5568 6971 BAES 0/0 100.0 96.4 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00768 1 1059 BCR 0/0 93.4 97.3 MEG_1209 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00359 1 1071 BLAEC 0/0 94.4 98.3 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig01160 619 1250 CATA 0/0 95.8 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00479 2394 3092 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00500 680 1312 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00205 564 1037 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01128 205 1289 EMRA 0/0 92.5 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00395 2417 3955 EMRB 0/0 100.0 97.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00068 6066 7256 EMRD 0/0 100.0 97.6 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00154 3665 4828 EMRK 0/0 100.0 98.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00154 2127 3665 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00593 1 1515 EPTA 0/0 92.2 98.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00734 512 1336 GADX 0/0 100.0 94.3 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00801 154 567 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00032 7263 7940 KDPE 0/0 100.0 95.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00460 2854 3288 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00113 4302 5534 MDFA 0/0 100.0 98.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00440 441 1688 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00050 1078 4155 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig01076 1 1119 MDTE 0/0 96.6 99.9 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig01034 286 1416 MDTG 0/0 92.2 98.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00965 414 1534 MDTH 0/0 92.7 97.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00096 5101 5430 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00096 5417 5782 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00406 1706 3078 MDTK 0/0 99.9 98.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00152 2989 4020 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00152 4020 6071 MDTO 0/0 100.0 96.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00152 6068 7510 MDTP 0/0 98.4 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00174 2759 3233 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00153 3202 4950 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00599 1175 2479 PBP4B 0/0 100.0 96.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00159 4685 5653 PMRF 0/0 100.0 98.1 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00331 3505 4161 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00052 1369 1691 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00566 1707 2522 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00231 1997 3202 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00231 3996 4412 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00031 9824 10990 UGD 0/0 100.0 97.5 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
ID099
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 34072 34947 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00025 30075 31307 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00004 39588 40244 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00015 11123 11845 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00015 11842 13245 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00030 22569 23942 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15358 15990 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00004 34072 34947 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00002 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00024 18418 20061 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 92234 93367 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00005 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00019 52080 52412 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00025 30075 31307 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00006 190476 191204 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00006 191572 192396 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00001 252998 253411 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00010 8259 8931 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00011 56027 56410 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00015 20858 22105 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00015 17736 20858 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00015 14658 17735 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00006 185818 186975 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00006 187000 190113 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 462445 463671 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 452606 453814 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00018 4230 5261 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00018 5261 7312 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00018 7309 8775 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 598759 600507 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 188564 189532 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00004 39588 40244 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00003 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00015 78031 79197 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00004 139902 141545 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00017 92234 93367 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00004 34072 34947 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00010 60720 62621 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00004 39588 40244 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 34072 34947 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00017 92234 93367 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00004 39588 40244 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00015 33712 35564 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00015 11123 11845 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00015 11842 13245 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 113440 114630 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00017 92234 93367 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00030 21874 22572 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00030 22569 23942 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15358 15990 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00002 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00013 27804 28994 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00024 18418 20061 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00006 190476 191204 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00006 191572 192396 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00001 252998 253411 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00010 8259 8931 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00011 56021 56410 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00011 55573 56007 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00025 30075 31307 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00015 20858 22105 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00015 17736 20858 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00015 14658 17735 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00006 185818 186975 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00006 187000 190113 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 462445 463671 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 452606 453814 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00011 95056 95385 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00011 95372 95737 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00007 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00018 4230 5261 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00018 5261 7312 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00018 7309 8775 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00005 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 598759 600507 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00019 52080 52412 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00010 60720 62621 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00005 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 188564 189532 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00004 39588 40244 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00016 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00018 30392 30714 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00015 78031 79197 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00004 139902 141545 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID09CT
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 137 925 aadA5_1 0/0 100.0 100 AF137361 aadA5 Streptomycin
contig00015 39907 40782 blaCTX-M-55_1 0/0 100.0 100 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00050 1056 1529 dfrA17_1 0/0 100.0 100 FJ460238 dfrA17 Trimethoprim
contig00004 26129 27361 mdf(A)_1 0/0 100.0 98 Y08743 mdf(A)
contig00044 3600 4256 qnrS1_1 0/0 100.0 100 AB187515 qnrS1 Ciprofloxacin
contig00041 3350 4165 sul2_2 0/0 100.0 100 AY034138 sul2 Sulfamethoxazole
contig00043 3261 4507 tet(A)_6 0/0 97.8 100 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 137 925 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00024 40300 43449 acrB 0/0 100.0 99.3 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 519811 522924 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00011 138859 140016 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 140028 143132 acrF 0/0 100.0 98.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 137798 138460 acrS 0/0 100.0 99.2 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 60022 60841 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 129169 129891 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 127769 129172 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00022 22408 23781 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00015 39907 40782 CTX-M-55 0/0 100.0 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00050 1056 1529 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 58848 60020 emrA 0/0 100.0 98.4 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 60037 61575 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 428091 429146 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 58191 58721 emrR 0/0 100.0 99.6 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 426553 428091 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00026 18390 20033 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00024 43472 44665 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00018 98249 99382 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 487410 488714 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 46202 47359 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00004 26129 27361 Escherichia_coli_mdfA 0/0 100.0 96.5 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 429670 430284 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 430289 433882 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00005 184889 185617 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00005 185985 186809 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00003 181458 181871 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 8052 8724 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 87087 87470 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 118909 120156 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 120156 123278 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 123279 126356 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00005 180231 181388 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00005 181413 184526 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 18596 19822 mdtG 0/0 100.0 100.0 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 28453 29661 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00019 75674 76906 mdtM 0/0 100.0 96.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00020 4247 5278 mdtN 0/0 100.0 97.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00020 5278 7329 mdtO 0/0 100.0 98.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00020 7326 8792 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 544210 544686 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 109166 110914 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 324356 325324 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00044 3600 4256 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00041 3350 4165 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00043 3261 4507 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00013 36176 37663 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 275638 277281 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 137 925 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00001 487410 488714 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00018 98249 99382 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 46202 47359 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00015 39907 40782 (Bla)blaCTX-M-55 0/0 100 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00012 60514 62415 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00044 3600 4256 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00041 3350 4165 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00043 3233 4507 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00043 4538 5188 (Tet)tetR 0/0 100 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00050 1056 1529 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 137 925 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00015 39907 40782 blaCTX-M-55 0/0 100 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00018 98249 99382 blaEC-18 0/0 100 99.7 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00050 1056 1529 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00044 3600 4256 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00041 3350 4165 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00043 3233 4432 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 43472 44665 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00024 40300 43449 ACRB 0/0 100.0 99.3 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 519811 522924 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00011 138859 140016 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00011 140028 143132 ACRF 0/0 100.0 98.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00011 137798 138460 ACRS 0/0 100.0 99.2 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 46202 47359 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00050 137 925 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00001 105450 107302 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00013 60022 60841 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 129169 129891 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 127769 129172 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 249176 250366 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00018 98249 99382 BLAEC 0/0 100.0 99.7 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00022 21713 22411 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00022 22408 23781 CPXAR 0/0 100.0 99.6 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00050 1056 1529 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 58848 60020 EMRA 0/0 100.0 98.4 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 60037 61575 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 102812 104002 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 428091 429254 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 58191 58721 EMRR 0/0 100.0 99.6 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 426553 428091 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00026 18390 20033 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 430289 433882 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00005 184889 185617 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00005 185985 186809 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00003 181458 181871 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 8052 8724 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 87081 87470 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 86633 87067 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00004 26129 27361 MDFA 0/0 100.0 98.1 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 118909 120156 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 120156 123278 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 123279 126356 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00005 180231 181388 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00005 181413 184526 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 18596 19822 MDTG 0/0 100.0 100.0 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 28453 29661 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 377430 377759 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 377078 377443 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 305939 307312 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00019 75674 76906 MDTM 0/0 100.0 96.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00020 4247 5278 MDTN 0/0 100.0 97.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00020 5278 7329 MDTO 0/0 100.0 98.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00020 7326 8792 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00001 544210 544686 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 109166 110914 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 60514 62415 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 487410 488714 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 324356 325324 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00044 3600 4256 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00019 11911 12780 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00020 30407 30730 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00041 3350 4165 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00043 3233 4507 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 275638 277281 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID101
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00021 30102 31334 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00003 226094 226750 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00003 277506 278228 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00003 278225 279628 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00038 22569 23942 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00003 231391 232266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00002 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00012 115182 116825 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00011 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 50255 51388 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00005 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00011 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00029 3730 4062 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00021 30102 31334 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00007 190118 190846 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00007 191214 192038 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00001 69273 69686 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00008 9078 9750 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00014 56027 56410 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00003 287241 288488 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00003 284119 287241 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00003 281041 284118 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00007 185460 186617 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00007 186642 189755 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 278720 279946 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 268881 270089 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00012 91422 92453 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00012 89371 91422 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00012 87908 89374 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 415034 416782 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 76806 77774 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00003 226094 226750 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00004 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 344414 345580 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00003 124793 126436 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00022 50255 51388 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00011 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00003 231391 232266 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00008 61539 63440 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00003 226094 226750 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00022 50255 51388 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00003 226094 226750 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00004 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00011 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00003 300095 301947 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00003 277506 278228 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 278225 279628 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 151708 152898 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 50255 51388 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00038 21874 22572 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00038 22569 23942 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00002 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00016 27804 28994 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00012 115182 116825 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00007 190118 190846 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00007 191214 192038 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00001 69273 69686 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00008 9078 9750 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00014 56021 56410 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00014 55573 56007 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00021 30102 31334 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00003 287241 288488 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00003 284119 287241 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00003 281041 284118 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00007 185460 186617 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00007 186642 189755 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 278720 279946 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 268881 270089 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00014 95056 95385 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00014 95372 95737 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00010 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00012 91422 92453 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00012 89371 91422 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00012 87908 89374 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00005 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 415034 416782 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00029 3730 4062 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00008 61539 63440 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00005 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 76806 77774 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 226094 226750 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00018 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00012 65969 66291 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00003 344414 345580 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00003 124793 126436 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID107II
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1694 2554 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00108 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00076 1442 2230 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00060 5615 6418 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00060 4779 5615 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00058 6763 7638 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00108 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00060 8797 9657 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00086 223 882 catA1_1 0/0 100 99.8 V00622 catA1 Chloramphenicol
contig00076 838 1311 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00124 42 551 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
contig00001 66890 68122 mdf(A)_1 0/0 100 98.3 Y08743 mdf(A)
contig00076 2750 3616 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00060 6479 7294 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00090 1009 2214 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00108 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00076 1442 2230 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00006 83264 86413 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 166193 169306 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 8666 9823 acrE 0/0 100.0 98.2 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 5550 8654 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 10222 10884 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00060 5615 6418 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00060 4779 5615 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00010 75623 76442 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00039 9386 10107 baeR 0/0 99.9 97.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00039 10104 11507 baeS 0/0 100.0 92.2 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00086 223 882 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00036 22665 24038 cpxA 0/0 100.0 98.9 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15337 15969 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00058 6763 7638 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00076 838 1311 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00124 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00014 54859 56031 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00014 56048 57586 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 68336 69391 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00014 54202 54732 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 66798 68336 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00026 22597 24240 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00006 82048 83241 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 118247 119380 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 131660 132964 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00006 172662 173819 Escherichia_coli_ampH 0/0 100.0 97.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00035 21833 22165 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00001 66890 68122 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 69914 70528 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 70533 74126 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00007 194554 195282 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00007 195651 196475 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00025 51443 51856 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00001 245399 246076 kdpE 0/0 100.0 95.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00031 27852 28235 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00039 19120 20367 mdtA 0/0 100.0 96.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00039 15998 19120 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00039 12920 15997 mdtC 0/0 100.0 96.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00007 189896 191053 mdtE 0/0 100.0 99.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00007 191078 194191 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00004 186815 188041 mdtG 0/0 100.0 98.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00004 196672 197880 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 320318 321550 mdtM 0/0 100.0 100.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00023 6589 7620 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00023 7620 9671 mdtO 0/0 100.0 96.6 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00023 9668 11134 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00002 190013 190487 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 52279 54027 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00108 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00037 1872 2840 pmrF 0/0 100.0 97.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00076 2777 3616 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00060 6479 7294 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00060 8797 9657 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00090 1009 2214 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00010 53808 55295 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00019 31242 32408 ugd 0/0 100.0 96.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00013 75473 77116 yojI 0/0 100.0 97.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1694 2554 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00076 1442 2230 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00060 5615 6418 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00060 4779 5615 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00002 131660 132964 (Bla)AmpC1_Ecoli 0/0 100 95.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00011 118247 119380 (Bla)AmpC2_Ecoli 0/0 100 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 172662 173819 (Bla)ampH_Ecoli 0/0 100 97.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00058 6763 7638 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00108 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00060 8797 9657 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00001 299932 301833 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00086 223 882 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00076 2777 3616 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00060 6479 7294 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00090 1009 2214 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00076 838 1311 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
contig00124 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1694 2554 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00108 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00076 1442 2230 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00060 5615 6442 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00060 4779 5615 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00058 6763 7638 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00011 118247 119380 blaEC-19 0/0 100 99.9 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00108 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00060 8797 9657 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00086 223 882 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00076 838 1311 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00124 42 551 dfrA8 0/0 100 100.0 NG_047741.1 trimethoprim-resistant dihydrofolate reductase DfrA8 TRIMETHOPRIM
contig00076 2777 3616 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00060 6479 7294 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00090 1009 2214 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00103 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00006 82048 83241 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 83264 86413 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 166193 169306 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 8666 9823 ACRE 0/0 100.0 98.2 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 5550 8654 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 10222 10884 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 172662 173819 AMPH 0/0 100.0 97.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00076 1442 2230 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00060 5615 6442 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00060 4779 5615 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00039 31975 33828 ASMA 0/0 100.0 97.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00010 75623 76442 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00039 9386 10107 BAER 0/0 99.9 97.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00039 10104 11507 BAES 0/0 100.0 92.2 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00013 49010 50200 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00011 118247 119380 BLAEC 0/0 100.0 99.9 MEG_1277 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00086 212 882 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00036 21970 22668 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00036 22665 24038 CPXAR 0/0 100.0 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15337 15969 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00076 838 1311 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00124 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00014 54859 56031 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00014 56048 57586 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 89483 90673 EMRD 0/0 100.0 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 68336 69499 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00014 54202 54732 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 66798 68336 EMRY 0/0 100.0 98.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00026 22597 24240 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 70533 74126 EVGS 0/0 100.0 97.1 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00007 194554 195282 GADW 0/0 100.0 97.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00007 195651 196475 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00025 51443 51856 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00001 245399 246076 KDPE 0/0 100.0 95.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00031 27846 28235 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00031 27397 27831 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 66890 68122 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00039 19120 20367 MDTA 0/0 100.0 96.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00039 15998 19120 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00039 12920 15997 MDTC 0/0 100.0 96.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00007 189896 191053 MDTE 0/0 100.0 99.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00007 191078 194191 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00004 186815 188041 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00004 196672 197880 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00005 288838 289167 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00005 288486 288851 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 221485 222857 MDTK 0/0 99.9 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 320318 321550 MDTM 0/0 100.0 100.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00023 6589 7620 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00023 7620 9671 MDTO 0/0 100.0 96.6 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00023 9668 11134 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00002 190013 190487 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 52279 54027 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00035 21833 22165 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00108 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00001 299932 301833 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 131660 132964 PBP4B 0/0 100.0 95.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00037 1872 2840 PMRF 0/0 100.0 97.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 237806 238675 ROBA 0/0 100.0 99.9 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00023 31335 31657 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00076 2776 3743 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00060 6479 7294 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00090 1009 2214 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00019 31242 32408 UGD 0/0 100.0 96.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00013 75473 77116 YOGI 0/0 100.0 97.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID124
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00097 117 920 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00093 247 1122 blaCTX-M-27_1 0/0 100.0 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00052 20339 21214 blaCTX-M-55_1 0/0 100.0 100.0 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00074 5984 6643 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00070 6 503 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00073 5009 6222 floR_2 0/0 99.9 98.2 AF118107 floR Chloramphenicol, Florfenicol
contig00005 10013 11245 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00099 68 998 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00070 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00090 551 1776 tet(A)_6 0/0 96.2 99.9 AF534183 tet(A) Doxycycline, Tetracycline
contig00080 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00010 39033 42182 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 135260 138373 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00031 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 5525 8629 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00097 117 920 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00006 151173 151994 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00029 57251 57973 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00029 55851 57254 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00074 5984 6643 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00012 53241 54614 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15387 16019 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00093 247 1122 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00052 20339 21214 CTX-M-55 0/0 100.0 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00070 6 503 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00002 58523 59695 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 59712 61250 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00009 121400 122455 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 57866 58396 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00009 119862 121400 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00045 7071 8714 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 37817 39010 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 65396 66529 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00004 169772 171076 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 127045 128202 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 10013 11245 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00009 122978 123592 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00009 123597 127190 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00073 5009 6223 floR 0/0 100.0 99.8 AF231986:3307-4522 floR is a plasmid or chromosome-encoded chloramphenicol exporter that is found in Bordetella bronchiseptica Escherichia coli Klebsiella pneumoniae Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 and Vibrio cholerae phenicol
contig00037 1783 2511 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00037 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00027 5350 5763 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00011 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 231029 231412 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00029 46991 48238 mdtA 0/0 100.0 97.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00029 48238 51360 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00029 51361 54438 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00037 6012 7169 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00037 2874 5987 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00016 18580 19806 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00016 28435 29643 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00043 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00036 22671 23702 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00036 23702 25753 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00036 25750 27216 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00099 68 970 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00004 114098 114574 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 92961 94709 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00009 17667 18635 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00070 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00090 551 1776 tet(A) 0/0 96.2 99.9 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00080 800 2005 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00006 127309 128796 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00034 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 923 1702 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00097 117 920 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00004 169772 171076 (Bla)AmpC1_Ecoli 0/0 100.0 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00013 65396 66529 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 127045 128202 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00093 247 1122 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00052 20339 21214 (Bla)blaCTX-M-55 0/0 100.0 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00011 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00099 68 970 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00074 5984 6643 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00073 5009 6223 (Phe)floR 0/0 100.0 99.8 AKLJ01000508:383-1597 (Phe)floR NA
contig00070 2207 3046 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00090 551 1776 (Tet)tetA 0/0 96.2 99.9 JX424423:94438-95712 (Tet)tetA NA
contig00080 800 2005 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00070 6 503 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 911 1702 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00097 117 944 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00093 247 1122 blaCTX-M-27 0/0 100.0 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00052 20339 21214 blaCTX-M-55 0/0 100.0 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00013 65396 66529 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00074 5984 6643 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00070 6 503 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00073 5009 6223 floR 0/0 100.0 99.8 NG_047869.1 chloramphenicol/florfenicol efflux MFS transporter FloR CHLORAMPHENICOL, FLORFENICOL
contig00099 68 998 mph(A) 2/10 100.0 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00070 2207 3046 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00090 626 1776 tet(A) 0/0 95.9 99.9 NG_048153.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00080 800 2005 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 37817 39010 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 39033 42182 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 135260 138373 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00031 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00031 5525 8629 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00031 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 127045 128202 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00070 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00097 117 944 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00029 32873 34725 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00006 151173 151994 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00029 57251 57973 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00029 55851 57254 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 67340 68530 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00013 65396 66529 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00074 5984 6643 CATA 0/0 100.0 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00012 52546 53244 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 53241 54614 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15387 16019 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00062 12915 13857 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00093 225 1128 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00070 6 503 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00002 58523 59695 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 59712 61250 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 14229 15419 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00009 121400 122563 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 57866 58396 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00009 119862 121400 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00045 7071 8714 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00009 123597 127190 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00073 5009 6223 FLOR 0/0 100.0 99.8 MEG_2921 Drugs:Phenicol:Phenicol_resistance_MFS_efflux_pumps:FLOR NA
contig00037 1783 2511 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00037 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00027 5350 5763 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00011 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 231029 231418 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 231432 231866 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 10013 11245 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00029 46991 48238 MDTA 0/0 100.0 97.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00029 48238 51360 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00029 51361 54438 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00037 6012 7169 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00037 2874 5987 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00016 18580 19806 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00016 28435 29643 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 198307 198636 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 197955 198320 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 126553 127926 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00043 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00036 22671 23702 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00036 23702 25753 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00036 25750 27216 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00099 68 998 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00004 114098 114574 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 92961 94709 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00004 169772 171076 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00009 17667 18635 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00035 4214 5083 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00053 5785 6108 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00070 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00090 551 1776 TETA 0/0 96.2 99.9 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00080 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00080 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00034 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID127
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00061 2251 3054 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00061 1415 2251 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00010 60490 61365 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00082 127 987 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00056 6568 7227 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00057 6 503 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00085 42 551 dfrA8_1 0/0 100.0 100.0 U10186 dfrA8 Trimethoprim
contig00005 10013 11245 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00057 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00061 3115 3930 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00067 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 923 1702 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00006 39033 42182 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 71642 74755 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00041 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00041 5525 8629 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00041 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00061 2251 3054 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00061 1415 2251 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00025 66950 67771 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00004 211948 212670 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00004 210548 211951 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00056 6568 7227 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00014 61530 62903 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00043 15936 16568 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00010 60490 61365 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 6 503 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00085 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00003 58458 59630 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00003 59647 61185 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00013 121400 122455 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00003 57801 58331 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00013 119862 121400 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00010 128577 130220 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00006 37817 39010 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 33322 34455 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00008 106154 107458 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00006 127045 128202 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 10013 11245 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00013 122978 123592 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00013 123597 127190 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00034 1783 2511 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00034 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00011 62969 63382 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00016 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00002 231029 231412 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00004 201688 202935 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00004 202935 206057 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00004 206058 209135 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00034 6012 7169 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00034 2874 5987 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00018 18580 19806 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00018 28435 29643 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00038 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00030 10907 11938 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00030 11938 13989 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00030 13986 15452 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 50480 50956 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 92961 94709 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00013 17667 18635 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 2207 3046 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00061 3115 3930 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00082 127 987 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00067 800 2005 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00025 43086 44573 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00032 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 923 1702 (AGly)aadA2 0/0 100 99.9 X68227:66-945 (AGly)aadA2 NA
contig00061 2251 3054 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00061 1415 2251 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00008 106154 107458 (Bla)AmpC1_Ecoli 0/0 100 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 33322 34455 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 127045 128202 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00010 60490 61365 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00082 127 987 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00016 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00056 6568 7227 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00057 2207 3046 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00061 3115 3930 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00067 800 2005 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00057 6 503 (Tmt)dfrA12 0/0 100 100.0 Z21672:310-807 (Tmt)dfrA12 NA
contig00085 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 911 1702 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00061 2251 3078 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00061 1415 2251 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00010 60490 61365 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 33322 34455 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00082 127 987 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00056 6568 7227 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00057 6 503 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00085 42 551 dfrA8 0/0 100 100.0 NG_047741.1 trimethoprim-resistant dihydrofolate reductase DfrA8 TRIMETHOPRIM
contig00057 2207 3046 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00061 3115 3930 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00067 800 2005 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 37817 39010 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 39033 42182 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 71642 74755 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00041 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00041 5525 8629 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00041 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 127045 128202 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00057 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00061 2251 3078 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00061 1415 2251 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00004 187571 189423 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00025 66950 67771 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00004 211948 212670 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00004 210548 211951 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00019 23378 24568 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 33322 34455 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00056 6568 7232 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00014 60835 61533 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 61530 62903 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00043 15936 16568 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00053 12905 13847 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00057 6 503 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00085 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00003 58458 59630 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00003 59647 61185 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00007 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00013 121400 122563 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00003 57801 58331 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00013 119862 121400 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00010 128577 130220 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00013 123597 127190 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00034 1783 2511 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00034 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00011 62969 63382 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00016 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00002 231029 231418 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00002 231432 231866 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00005 10013 11245 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00004 201688 202935 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00004 202935 206057 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00004 206058 209135 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00034 6012 7169 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00034 2874 5987 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00018 18580 19806 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00018 28435 29643 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 198307 198636 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 197955 198320 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 126553 127926 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00038 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00030 10907 11938 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00030 11938 13989 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00030 13986 15452 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00008 50480 50956 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 92961 94709 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00016 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00008 106154 107458 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00013 17667 18635 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00001 19983 20852 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00030 37069 37392 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00057 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00061 3115 3930 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00067 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00067 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00032 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID128
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 2620 3408 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00019 88219 89094 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00043 2016 2489 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00002 29927 31159 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00061 68 989 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00043 3928 4794 sul1_5 0/0 100.0 99.8 EU780013 sul1 Sulfamethoxazole
contig00050 1712 2958 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 2620 3408 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 410572 413721 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 127119 130232 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 365052 366209 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 366221 369325 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 363991 364653 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 162521 163340 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 533003 533724 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 533721 535124 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00019 66950 68317 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00010 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00019 88219 89094 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00043 2016 2489 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00018 93817 94989 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00018 95006 96544 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 222947 224002 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00018 93160 93690 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 224002 225540 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00011 146400 148043 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00002 409356 410549 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00009 131126 132259 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 498471 499628 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00014 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00002 29927 31159 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 221809 222423 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 218211 221804 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00010 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00010 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00008 129735 130148 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00002 185280 185952 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00005 289457 289840 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 542737 543984 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 539615 542737 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 536537 539614 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00010 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00010 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00006 91920 93146 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00006 82083 83291 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00004 306755 307987 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00011 116127 117158 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00011 114076 116127 mdtO 0/0 100.0 97.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 112613 114079 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00061 68 973 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00006 217793 219541 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 332580 333548 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00043 3955 4794 sul1 0/0 100.0 99.9 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00050 1712 2958 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 135351 136838 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 597080 598246 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 391754 393397 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 2620 3408 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00009 131126 132259 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 498471 499628 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00019 88219 89094 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00002 244498 246399 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00061 68 973 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00043 3955 4794 (Sul)sul1 0/0 100 99.9 AF071413:6700-7539 (Sul)sul1 NA
contig00050 1684 2958 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00050 2989 3639 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00043 2016 2489 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 2620 3408 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00019 88219 89094 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00009 131126 132259 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00043 2016 2489 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00061 68 989 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00043 3955 4794 sul1 0/0 100 99.9 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00050 1684 2883 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 409356 410549 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 410572 413721 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 127119 130232 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 365052 366209 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 366221 369325 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 363991 364653 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 498471 499628 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00043 2620 3408 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00001 555644 557496 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 162521 163340 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 533003 533724 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 533721 535124 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 417030 418220 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00009 131126 132259 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00019 66255 66953 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 66950 68317 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00043 2016 2489 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00018 93817 94989 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00018 95006 96544 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00007 193341 194531 EMRD 0/0 100.0 97.6 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 222839 224002 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00018 93160 93690 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 224002 225540 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00011 146400 148043 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 218211 221804 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00010 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00010 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00008 129735 130148 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00002 185280 185952 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00005 289457 289846 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00005 289861 290295 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00002 29927 31159 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 542737 543984 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 539615 542737 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 536537 539614 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00010 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00010 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00006 91920 93146 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00006 82083 83291 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00005 258563 258892 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00005 258211 258576 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00004 306755 307987 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00011 116127 117158 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00011 114076 116127 MDTO 0/0 100.0 97.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00011 112613 114079 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00061 68 989 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00006 217793 219541 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00014 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00002 244498 246399 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 332580 333548 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00004 247279 248148 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00011 84260 84582 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00043 3954 4921 SULI 0/0 100.0 99.9 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00050 1684 2958 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 597080 598246 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 391754 393397 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID129E
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00052 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00041 8750 9553 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00041 7914 8750 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00041 2636 3511 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00052 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00041 6333 7193 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00042 5401 5883 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00010 26021 27253 mdf(A)_1 0/0 100.0 98.4 Y08743 mdf(A)
contig00043 4404 5048 qnrB1_1 0/0 100.0 100.0 DQ351241 qnrB1 Ciprofloxacin
contig00041 9614 10429 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00048 1429 2697 tet(A)_6 1/22 97.8 93.2 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00052 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00011 124628 127777 acrB 0/0 100.0 99.2 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 132897 136010 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00020 102177 103334 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 103346 106450 acrF 0/0 100.0 98.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00020 101116 101778 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00041 8750 9553 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00041 7914 8750 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00014 49028 49847 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 287600 288322 baeR 0/0 100.0 97.9 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 286200 287603 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00028 22469 23842 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00041 2636 3511 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00042 5401 5883 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00034 23988 25160 emrA 0/0 100.0 98.3 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00034 25177 26715 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00004 40969 42024 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00034 23331 23861 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00004 39431 40969 emrY 0/0 100.0 98.2 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00026 18384 20027 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00011 127800 128993 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00015 149708 150841 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00004 100495 101799 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00011 36338 37495 Escherichia_coli_ampH 0/0 100.0 99.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00013 76660 76992 Escherichia_coli_emrE 0/0 100.0 99.4 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00010 26021 27253 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00004 42548 43162 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00004 43167 46760 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00006 191321 192049 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00006 192417 193241 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00003 72256 72669 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00007 8002 8674 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00018 51533 51916 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 277340 278587 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 278587 281709 mdtB 0/0 100.0 97.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 281710 284787 mdtC 0/0 100.0 98.2 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00006 186663 187820 mdtE 0/0 100.0 99.6 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00006 187845 190958 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 243280 244506 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 233441 234649 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00022 75713 76945 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00016 137105 138136 mdtN 0/0 100.0 97.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00016 135054 137105 mdtO 0/0 100.0 98.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00016 133591 135057 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 157469 157945 mphB 0/0 100.0 97.9 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00010 152771 154519 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00052 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 476698 477666 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00043 4367 5048 QnrB17 1/1 100.0 99.1 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00041 9614 10429 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00041 6333 7193 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00048 1429 2697 tet(A) 1/22 97.8 93.2 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00014 25182 26669 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 223593 224759 ugd 0/0 100.0 96.6 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 427979 429622 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00041 8750 9553 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00041 7914 8750 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00004 100495 101799 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00015 149708 150841 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00011 36338 37495 (Bla)ampH_Ecoli 0/0 100.0 99.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00041 2636 3511 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00052 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00041 6333 7193 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00007 60465 62366 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00043 4367 5048 (Flq)qnrB1 1/1 100.0 99.8 DQ351241:1-681 (Flq)qnrB1 NA
contig00041 9614 10429 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00048 1429 2725 (Tet)tetA 1/22 100.0 93.3 JX424423:94438-95712 (Tet)tetA NA
contig00048 757 1398 (Tet)tetR 1/9 98.6 93.1 HF545434:53576-54226 (Tet)tetR NA
contig00042 5401 5874 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00052 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00041 8750 9577 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00041 7914 8750 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00041 2636 3511 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00015 149708 150841 blaEC-18 0/0 100 99.2 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00052 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00041 6333 7193 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00042 5401 5874 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00043 4404 5048 qnrB1 0/0 100 100.0 NG_050469.1 quinolone resistance pentapeptide repeat protein QnrB1 QUINOLONE
contig00041 9614 10429 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00048 1526 2725 tet(A) 0/0 100 100.0 NG_048157.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00051 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00011 127800 128993 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 124628 127777 ACRB 0/0 100.0 99.2 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 132897 136010 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00020 102177 103334 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00020 103346 106450 ACRF 0/0 100.0 98.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00020 101116 101778 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00011 36338 37495 AMPH 0/0 100.0 99.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00041 8750 9577 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00041 7914 8750 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 263553 265405 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00014 49028 49847 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 287600 288322 BAER 0/0 100.0 97.9 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 286200 287603 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 401517 402707 BCR 0/0 100.0 96.7 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00015 149708 150841 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00028 21774 22472 CPXAR 0/0 100.0 99.9 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00028 22469 23842 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00005 158191 159133 CTX 0/0 100.0 98.8 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00042 5401 5874 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00034 23988 25160 EMRA 0/0 100.0 98.3 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00034 25177 26715 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00009 91841 93031 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00004 40969 42132 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00034 23331 23861 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00004 39431 40969 EMRY 0/0 100.0 98.3 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00026 18384 20027 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00004 43167 46760 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00006 191321 192049 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00006 192417 193241 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00003 72256 72669 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00007 8002 8674 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00018 51527 51916 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00018 51079 51513 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 26021 27253 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 277340 278587 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 278587 281709 MDTB 0/0 100.0 97.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 281710 284787 MDTC 0/0 100.0 98.2 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00006 186663 187820 MDTE 0/0 100.0 99.6 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00006 187845 190958 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 243280 244506 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 233441 234649 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00018 90560 90889 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00018 90876 91241 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00012 125931 127304 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00022 75713 76945 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00016 137105 138136 MDTN 0/0 100.0 97.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00016 135054 137105 MDTO 0/0 100.0 98.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00016 133591 135057 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00004 157469 157945 MPHB 0/0 100.0 97.9 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00010 152771 154519 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 76660 76992 MVRC 0/0 100.0 99.4 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00052 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00007 60465 62366 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00004 100495 101799 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 476698 477666 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00043 4367 5048 QNRB 1/1 100.0 99.1 MEG_5928 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00022 11905 12774 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00016 111654 111976 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00041 9614 10429 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00041 5966 7211 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00048 1526 2725 TETA 0/0 100.0 100.0 MEG_7021 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 223593 224759 UGD 0/0 100.0 96.6 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 427979 429622 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID130
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 24441 25244 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00028 23605 24441 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00028 16991 17866 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00028 22024 22884 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00042 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00003 159075 160307 mdf(A)_1 0/0 100.0 98.9 Y08743 mdf(A)
contig00028 11694 12350 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00028 25305 26120 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00036 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 128420 131569 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 287068 290181 acrD 0/0 100.0 99.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00027 8778 9935 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00027 5662 8766 acrF 0/0 100.0 99.3 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00027 10334 10996 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00028 24441 25244 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00028 23605 24441 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 339451 340272 bacA 0/0 100.0 99.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 133846 134568 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 134565 135968 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00011 61329 62702 cpxA 0/0 100.0 98.9 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 14930 15562 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00028 16991 17866 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00042 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 57502 58674 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 58691 60229 emrB 0/0 100.0 98.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00004 180341 181396 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 56845 57375 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00004 178803 180341 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00005 178871 180514 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 131592 132785 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 135515 136648 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00004 244919 246223 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 42298 43455 Escherichia_coli_ampH 0/0 100.0 99.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00003 159075 160307 Escherichia_coli_mdfA 0/0 100.0 97.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00004 181920 182534 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00004 182539 186132 evgS 0/0 100.0 99.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00022 2243 2971 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00022 1051 1875 gadX 0/0 100.0 99.6 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 121431 121844 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 7933 8610 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 686055 686438 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 143581 144828 mdtA 0/0 100.0 99.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 140459 143581 mdtB 0/0 100.0 98.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 137381 140458 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00022 6472 7629 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00022 3334 6447 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 387886 389112 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 397743 398951 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00015 70195 71406 mdtM 0/0 98.3 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00005 210240 211271 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00005 211271 213322 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 213319 214785 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 310859 311335 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 250991 252739 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 62195 63163 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00028 11694 12350 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00028 25305 26120 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00028 22024 22884 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00036 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00002 315586 317073 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 2068 3711 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 24441 25244 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00028 23605 24441 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00004 244919 246223 (Bla)AmpC1_Ecoli 0/0 100 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00005 135515 136648 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 42298 43455 (Bla)ampH_Ecoli 0/0 100 99.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00028 16991 17866 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00028 22024 22884 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00012 60318 62219 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00028 11694 12350 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00028 25305 26120 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00036 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00036 2953 3577 (Tet)tetR 0/0 96 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00042 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 24441 25268 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00028 23605 24441 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00028 16991 17866 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00005 135515 136648 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00028 22024 22884 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00042 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00028 11694 12350 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00028 25305 26120 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00036 1648 2847 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 131592 132785 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 128420 131569 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 287068 290181 ACRD 0/0 100.0 99.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00027 8778 9935 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00027 5662 8766 ACRF 0/0 100.0 99.3 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00027 10334 10996 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 42298 43455 AMPH 0/0 100.0 99.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00028 24441 25268 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00028 23605 24441 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 157231 159083 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 339451 340272 BACA 0/0 100.0 99.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 133846 134568 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 134565 135968 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 23590 24780 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00005 135515 136648 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00011 60634 61332 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00011 61329 62702 CPXAR 0/0 100.0 99.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 14930 15562 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00042 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 57502 58674 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 58691 60229 EMRB 0/0 100.0 98.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00013 25297 26487 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00004 180341 181504 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 56845 57375 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00004 178803 180341 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00005 178871 180514 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00004 182539 186132 EVGS 0/0 100.0 99.6 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00022 2243 2971 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00022 1051 1875 GADX 0/0 100.0 99.6 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 121431 121844 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 7933 8610 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 686055 686444 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 686458 686892 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 159075 160307 MDFA 0/0 100.0 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 143581 144828 MDTA 0/0 100.0 99.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 140459 143581 MDTB 0/0 100.0 98.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 137381 140458 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00022 6472 7629 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00022 3334 6447 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 387886 389112 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 397743 398951 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 637619 637948 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 637267 637632 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 565866 567239 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00015 70195 71406 MDTM 0/0 98.3 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00005 210240 211271 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00005 211271 213322 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00005 213319 214785 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00004 310859 311335 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 250991 252739 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 60318 62219 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00004 244919 246223 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 62195 63163 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00028 11694 12350 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00015 21744 22613 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 18586 18908 SOXS 0/0 99.7 99.4 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00028 25305 26120 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00028 21657 22902 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00036 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00004 2068 3711 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID134
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00374 1695 2555 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00534 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00618 1261 2028 aph(3’’)-Ib_5 0/0 95.5 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00618 425 1261 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00142 560 1435 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00534 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00354 275 1135 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00057 5401 5883 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00468 1 1157 mdf(A)_1 0/0 93.8 98.9 Y08743 mdf(A)
contig00755 1 1157 mdf(A)_1 0/0 93.8 98.3 Y08743 mdf(A)
contig00077 4403 5047 qnrB1_1 0/0 100.0 100.0 DQ351241 qnrB1 Ciprofloxacin
contig00047 5804 6460 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00164 77 892 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00165 1429 2697 tet(A)_6 1/22 97.8 93.2 AF534183 tet(A) Doxycycline, Tetracycline
contig00424 1047 2293 tet(A)_6 0/0 97.8 99.4 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00374 1695 2555 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00534 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00313 368 1525 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00313 1924 2586 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig02288 39 701 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00618 1261 2028 APH(3’’)-Ib 0/0 95.5 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00618 425 1261 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00627 1008 1730 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00142 560 1435 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 5401 5883 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig02207 26 556 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00041 7748 8080 Escherichia_coli_emrE 0/0 100.0 99.4 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00468 1 1157 Escherichia_coli_mdfA 0/0 93.8 97.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00755 1 1157 Escherichia_coli_mdfA 0/0 93.8 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00812 265 1089 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00891 265 1089 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00361 462 875 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig01593 478 1155 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00076 2473 5595 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00087 2078 5200 mdtB 0/0 100.0 97.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00445 1 1223 mdtM 0/0 99.2 96.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig01431 1 1121 mdtM 0/0 90.9 96.1 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00289 757 1788 mdtN 0/0 100.0 97.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00346 548 1579 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00534 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00077 4366 5047 QnrB17 1/1 100.0 99.1 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00047 5804 6460 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00164 77 892 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00354 275 1135 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00165 1429 2697 tet(A) 1/22 97.8 93.2 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00424 1047 2293 tet(A) 0/0 97.8 99.4 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00107 60 1226 ugd 0/0 100.0 96.1 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00197 60 1226 ugd 0/0 100.0 96.6 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00547 235 1878 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00374 1695 2555 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00618 1261 2028 (AGly)strA 0/0 95.5 99.9 AB366441:22458-23261 (AGly)strA NA
contig00618 425 1261 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00142 560 1435 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00534 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00354 275 1135 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00047 5804 6460 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00077 4366 5047 (Flq)qnrB1 1/1 100.0 99.8 DQ351241:1-681 (Flq)qnrB1 NA
contig00164 77 892 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00165 1429 2725 (Tet)tetA 1/22 100.0 93.3 JX424423:94438-95712 (Tet)tetA NA
contig00424 1019 2293 (Tet)tetA 0/0 100.0 99.4 JX424423:94438-95712 (Tet)tetA NA
contig00165 757 1398 (Tet)tetR 1/9 98.6 93.1 HF545434:53576-54226 (Tet)tetR NA
contig00057 5401 5874 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00374 1695 2555 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00534 1539 2093 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00618 1261 2028 aph(3’’)-Ib 0/0 92.8 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00618 425 1261 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00142 560 1435 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00534 578 1408 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00354 275 1135 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00057 5401 5874 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00077 4403 5047 qnrB1 0/0 100.0 100.0 NG_050469.1 quinolone resistance pentapeptide repeat protein QnrB1 QUINOLONE
contig00047 5804 6460 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00164 77 892 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00165 1526 2725 tet(A) 0/0 100.0 100.0 NG_048157.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00424 1019 2218 tet(A) 0/0 100.0 100.0 NG_048159.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00374 1695 2555 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00313 368 1525 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00313 1924 2586 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig02288 39 701 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00618 1261 2028 APH3-DPRIME 0/0 92.8 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00618 425 1261 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00627 1008 1730 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00341 759 1949 BCR 0/0 100.0 96.7 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00785 1 1122 BCR 0/0 94.2 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00001 61926 62868 CTX 0/0 100.0 98.8 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00057 5401 5874 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01185 122 1312 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig02207 26 556 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00812 265 1089 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00891 265 1089 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00361 462 875 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig01593 478 1155 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig01613 588 1022 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig02692 193 627 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00468 1 1157 MDFA 0/0 93.8 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00755 1 1157 MDFA 0/0 93.8 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00076 2473 5595 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00087 2078 5200 MDTB 0/0 100.0 97.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00445 1 1223 MDTM 0/0 99.2 96.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig01431 1 1121 MDTM 0/0 90.9 96.1 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00289 757 1788 MDTN 0/0 100.0 97.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00346 548 1579 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00041 7748 8080 MVRC 0/0 100.0 99.4 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00534 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00077 4366 5047 QNRB 1/1 100.0 99.1 MEG_5928 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00047 5804 6460 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00164 77 892 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00354 257 1502 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00165 1526 2725 TETA 0/0 100.0 100.0 MEG_7021 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00424 1019 2293 TETA 0/0 100.0 99.4 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00107 60 1226 UGD 0/0 100.0 96.1 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00197 60 1226 UGD 0/0 100.0 96.6 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00547 235 1878 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID136
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 1409 2212 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00053 573 1409 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00046 602 1477 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00048 4597 5457 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00074 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00020 64609 65841 mdf(A)_1 0/0 100.0 99.1 Y08743 mdf(A)
contig00048 9559 10480 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00046 6118 6774 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00053 2273 3088 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00060 1676 2922 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00012 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 270325 271482 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00053 1409 2212 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00053 573 1409 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00003 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 115493 116215 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 114093 115496 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 24220 25593 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00046 602 1477 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00074 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00001 54333 55505 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00001 55522 57060 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00012 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00001 53676 54206 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00012 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00024 18431 20074 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 50281 51414 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00012 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00030 3107 3439 Escherichia_coli_emrE 0/0 100.0 92.5 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00020 64609 65841 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00012 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00012 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00006 190046 190774 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00006 191142 191966 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00004 201389 201802 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00007 8188 8860 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00008 119385 119768 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 105233 106480 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 106480 109602 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 109603 112680 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00006 185388 186545 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00006 186570 189683 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00015 96840 98066 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00015 87001 88209 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00016 82731 83963 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00017 4240 5271 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00017 5271 7322 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00017 7319 8785 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00048 9575 10480 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00012 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00011 46198 47946 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 304557 305525 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00046 6118 6774 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00053 2273 3088 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00048 4597 5457 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00060 1676 2922 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 255895 257538 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 1409 2212 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00053 573 1409 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00012 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00025 50281 51414 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00046 602 1477 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00048 4597 5457 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00007 60649 62550 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00046 6118 6774 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00048 9575 10480 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00053 2273 3088 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00060 1648 2922 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00074 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00053 1409 2236 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00053 573 1409 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00046 602 1477 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00025 50281 51414 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00048 4597 5457 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00074 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00048 9559 10480 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00046 6118 6774 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00053 2273 3088 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00060 1648 2847 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00012 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 270325 271482 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00053 1409 2236 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00053 573 1409 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 90978 92830 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 115493 116215 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 114093 115496 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 229434 230624 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00025 50281 51414 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 23525 24223 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 24220 25593 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00074 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00001 54333 55505 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00001 55522 57060 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00005 111388 112578 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00012 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00001 53676 54206 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00012 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00024 18431 20074 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00012 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00006 190046 190774 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00006 191142 191966 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00004 201389 201802 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00007 8188 8860 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00008 119385 119774 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00008 119788 120222 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00020 64609 65841 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 105233 106480 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 106480 109602 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 109603 112680 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00006 185388 186545 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00006 186570 189683 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00015 96840 98066 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00015 87001 88209 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00008 35375 35704 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00008 35023 35388 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00009 134590 135963 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00016 82731 83963 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00017 4240 5271 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00017 5271 7322 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00017 7319 8785 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00048 9559 10480 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00012 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00011 46198 47946 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00030 3107 3439 MVRC 0/0 100.0 92.5 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00007 60649 62550 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00012 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 304557 305525 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00046 6118 6774 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00016 11978 12847 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00017 30402 30725 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00053 2273 3088 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00048 4579 5824 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00060 1648 2922 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00002 255895 257538 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID141
Resfinder
## [1] "No antibiotic resistance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 23 842 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
ARG-ANNOT
## [1] "No antibiotic resistance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resistance genes from NCBI database were found"
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 23 842 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
ID142
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 161 949 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00999 132 947 aph(3’)-Ia_1 0/0 100 100.0 V00359 aph(3’)-Ia
contig00128 467 1342 blaCTX-M-15_1 0/0 100 99.9 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00012 1080 1553 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig03009 20 439 fosA_6 0/0 100 94.0 ACZD01000244 fosA Fosfomycin
contig00163 911 1567 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
contig00443 268 1134 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 161 949 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00999 134 947 APH(3’)-Ia 0/0 99.8 99.4 BX664015.1:103833-103017 APH(3’)-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3’)-Ic an aminoglycoside phosphotransferase encoded by plasmids transposons and genomic islands in K. pneumoniae A. baumannii S. marcescens Corynebacterium spp. Photobacterium spp. and Citrobacter spp. aminoglycoside
contig00128 467 1342 CTX-M-15 0/0 100.0 99.9 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00012 1080 1553 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig03009 20 439 FosA5 0/0 100.0 93.3 KP143090.1:1619-1199 fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin fosfomycin
contig00163 911 1567 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00443 268 1107 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 161 949 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00999 132 947 (AGly)aph3-Ia 0/0 100 99.9 HQ840942:23569-24384 (AGly)aph3-Ia NA
contig00128 467 1342 (Bla)blaCTX-M-15 0/0 100 99.9 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig03009 20 439 (Fcyn)FosA5 0/0 100 93.3 KP143090:1200-1619 (Fcyn)FosA5 NA
contig00163 911 1567 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00443 268 1107 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00012 1080 1553 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 161 949 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00999 132 947 aph(3’)-Ia 0/0 100 100.0 NG_047430.1 aminoglycoside O-phosphotransferase APH(3’)-Ia KANAMYCIN
contig00128 467 1342 blaCTX-M-143 0/0 100 100.0 NG_067138.1 class A extended-spectrum beta-lactamase CTX-M-143 CEPHALOSPORIN
contig00012 1080 1553 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig03009 20 439 fosA_gen 0/0 100 94.0 NG_047881.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
contig00163 911 1567 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00443 268 1107 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 161 949 ANT3-DPRIME 0/0 100 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00999 132 947 APH3-PRIME 0/0 100 100.0 MEG_1079 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME NA
contig00536 681 1365 CPXAR 0/0 98 97.5 MEG_2116 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 1080 1553 DFRA 0/0 100 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig03009 20 439 FOSA 0/0 100 94.0 MEG_2991 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00443 1101 1448 QACEDELTA1 0/0 100 100.0 MEG_5829 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 NA
contig00163 911 1567 QNRS 0/0 100 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00443 141 1108 SULI 0/0 100 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
ID164
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00106 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00091 1773 2561 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00087 738 1541 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00092 1225 2100 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00106 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00087 3920 4780 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00091 2692 3165 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 150954 152186 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00091 387 1253 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00087 1602 2417 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00096 636 1841 tet(B)_2 0/0 100 99.9 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00106 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00091 1773 2561 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00008 38756 41905 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 148083 151196 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00072 5854 8958 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00036 601 1263 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00087 738 1541 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00003 70354 71173 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00023 57249 57971 baeR 0/0 100.0 99.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00023 55849 57252 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00012 61576 62949 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00009 15081 15713 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00092 1225 2100 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00091 2692 3165 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 58703 59875 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 59892 61430 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 168194 169249 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 58046 58576 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 166656 168194 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00007 81600 83243 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 37540 38733 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 38239 39372 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00049 28099 29397 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 126872 128029 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 150954 152186 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 169773 170387 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 170392 173985 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00042 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00042 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00011 41423 41836 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8127 8804 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 184592 184975 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00023 46989 48236 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00023 48236 51358 mdtB 0/0 100.0 99.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00023 51359 54436 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00042 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00042 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00034 18580 19806 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00034 28435 29643 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00021 70066 71298 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00007 112981 114012 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00007 114012 116063 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00007 116060 117526 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 126902 127376 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 233901 235649 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00106 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00005 63989 64957 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00091 387 1226 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00087 1602 2417 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00087 3920 4780 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00096 636 1841 tet(B) 0/0 100.0 99.7 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00003 46587 48074 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00005 2113 3756 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00091 1773 2561 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00087 738 1541 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00049 28099 29397 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00007 38239 39372 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 126872 128029 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00092 1225 2100 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00106 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00087 3920 4780 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60214 62115 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00091 387 1226 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00087 1602 2417 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00096 636 1841 (Tet)tetB 0/0 100.0 99.6 AB089594:1-1206 (Tet)tetB NA
contig00091 2692 3165 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00106 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00091 1773 2561 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00087 738 1565 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00092 1225 2100 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00007 38239 39372 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00106 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00087 3920 4780 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00091 2692 3165 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00091 387 1226 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00087 1602 2417 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00096 636 1841 tet(B) 0/0 100 99.9 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00008 37540 38733 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 38756 41905 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 148083 151196 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00072 5854 8958 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00036 601 1263 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 126872 128029 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00091 1773 2561 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00087 738 1565 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00023 32871 34723 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 70354 71173 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00023 57249 57971 BAER 0/0 100.0 99.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00023 55849 57252 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00019 67340 68530 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00007 38239 39372 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00012 60881 61579 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61576 62949 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 15081 15713 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00122 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00091 2692 3165 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 58703 59875 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 59892 61430 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00020 611 1801 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 168194 169357 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 58046 58576 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 166656 168194 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00007 81600 83243 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 170392 173985 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00042 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00042 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00011 41423 41836 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8127 8804 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 184592 184981 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 184995 185429 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 150954 152186 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00023 46989 48236 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00023 48236 51358 MDTB 0/0 100.0 99.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00023 51359 54436 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00042 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00042 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00034 18580 19806 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00034 28435 29643 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 151870 152199 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 151518 151883 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 80116 81489 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00021 70066 71298 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00007 112981 114012 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00007 114012 116063 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00007 116060 117526 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 126902 127376 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 233901 235649 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00106 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00013 60214 62115 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00049 28099 29397 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00005 63989 64957 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00021 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00007 139143 139466 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00091 260 1227 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00087 1602 2417 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00096 636 1841 TETB 0/0 100.0 99.9 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00112 137 553 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00005 2113 3756 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID169
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1694 2554 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00096 1540 2139 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00072 1308 2096 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00087 912 1715 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00087 76 912 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00074 2407 3282 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00096 579 1409 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00072 704 1177 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 29919 31151 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00111 69 907 mph(A)_1 0/0 92.6 100.0 D16251 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00072 2616 3482 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00087 1776 2591 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00073 5808 7054 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00096 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00072 1308 2096 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00005 43328 46477 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 132237 135350 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00010 149301 150458 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 150470 153574 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 148240 148902 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00087 912 1715 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00087 76 912 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00008 120355 121174 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00004 169403 170124 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00004 170121 171524 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00019 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00074 2407 3282 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00072 704 1177 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00055 7374 8546 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00055 5819 7357 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00003 38467 39522 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00055 8673 9203 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00003 36929 38467 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00035 18414 20057 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 42112 43305 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 48091 49224 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00005 131227 132384 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00016 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00001 29919 31151 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00003 40046 40660 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00003 40665 44258 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00006 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00006 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00021 34762 35175 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00001 185272 185944 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00031 29733 30116 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00004 179137 180384 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00004 176015 179137 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00004 172937 176014 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00006 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00006 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00032 2460 3686 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00020 6127 7335 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00027 38804 40036 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00013 10778 11809 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00013 11809 13860 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00013 13857 15323 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00111 69 907 mphA 0/0 92.6 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00011 45414 47162 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00096 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00012 63603 64571 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00072 2643 3482 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00087 1776 2591 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00073 5808 7054 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00008 93185 94672 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 233480 234646 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00012 3755 5398 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1694 2554 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00072 1308 2096 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00087 912 1715 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00087 76 912 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00022 48091 49224 (Bla)AmpC2_Ecoli 0/0 100.0 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 131227 132384 (Bla)ampH_Ecoli 0/0 100.0 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00074 2407 3282 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00096 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00001 244490 246391 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00111 69 907 (MLS)mph(A) 0/0 92.6 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00072 2643 3482 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00087 1776 2591 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00073 5780 7054 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00072 704 1177 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1694 2554 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00096 1540 2094 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00072 1308 2096 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00087 912 1739 aph(3’’)-Ib 0/0 100.0 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00087 76 912 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00074 2407 3282 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00022 48091 49224 blaEC-5 0/0 100.0 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00096 579 1409 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00072 704 1177 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00111 69 907 mph(A) 0/0 92.6 100.0 NG_047985.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00072 2643 3482 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00087 1776 2591 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00073 5780 6979 tet(A) 0/0 100.0 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 42112 43305 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 43328 46477 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00003 132237 135350 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00010 149301 150458 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00010 150470 153574 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00010 148240 148902 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 131227 132384 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00072 1308 2096 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00087 912 1739 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00087 76 912 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00004 192044 193896 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00008 120355 121174 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00004 169403 170124 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00004 170121 171524 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 19847 21037 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 48091 49224 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00019 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00072 704 1177 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00055 7374 8546 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00055 5819 7357 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00002 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00003 38467 39630 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00055 8673 9203 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00003 36929 38467 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00035 18414 20057 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00003 40665 44258 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00006 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00006 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00021 34762 35175 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00001 185272 185944 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00031 29727 30116 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00031 29278 29712 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 29919 31151 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00004 179137 180384 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00004 176015 179137 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00004 172937 176014 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00006 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00006 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00032 2460 3686 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00020 6127 7335 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00036 35469 35798 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00036 35117 35482 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00024 70531 71903 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00027 38804 40036 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00013 10778 11809 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00013 11809 13860 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00013 13857 15323 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00111 69 907 MPHA 0/0 92.6 100.0 MEG_4029 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00011 45414 47162 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00016 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00096 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00001 244490 246391 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00012 63603 64571 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00030 37224 38093 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00013 43354 43676 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00072 2642 3609 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00087 1776 2591 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00073 5780 7054 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00004 233480 234646 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00012 3755 5398 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID177
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1578 2381 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00070 742 1578 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00052 6580 7455 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00080 220 1032 blaNDM-5_1 0/0 100.0 100.0 JN104597 blaNDM-5 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam
contig00052 2899 3759 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00073 181 663 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00014 32376 33608 mdf(A)_1 0/0 100.0 98.1 Y08743 mdf(A)
contig00057 5278 5934 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00070 2442 3257 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00052 317 1563 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00033 12982 16131 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 134717 137830 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00008 163230 164387 acrE 0/0 100.0 98.4 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 164399 167503 acrF 0/0 100.0 97.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 162169 162831 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00070 1578 2381 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00070 742 1578 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 138999 139818 bacA 0/0 99.8 96.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00026 11097 11819 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00026 11816 13219 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00029 38790 40163 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00016 15391 16023 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00052 6580 7455 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00080 1036 1401 determinant_of_bleomycin_resistance 0/0 100.0 100.0 KC503911.1:9883-10249 A novel bleomycin resistance protein encoded by a metallo-beta-lactamase-associated ble gene. Expression of BRP(MBL) confers resistance to bleomycin and bleomycin-like antibiotics in Enterobacteriaceae and Acinetobacter where it is co-expressed with an MBL and controlled by the same promoter region. glycopeptide
contig00073 181 663 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00012 60401 61573 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00012 61590 63128 emrB 0/0 100.0 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 338432 339487 emrK 0/0 100.0 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00012 59744 60274 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 336894 338432 emrY 0/0 100.0 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00004 67358 69001 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00033 16154 17347 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 110920 112053 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 401770 403074 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 24731 25888 Escherichia_coli_ampH 0/0 100.0 96.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00014 32376 33608 Escherichia_coli_mdfA 0/0 100.0 96.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 340011 340625 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00065 316 930 evgA 0/0 100.0 98.5 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 340630 344223 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00065 935 4528 evgS 0/0 100.0 95.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00010 54226 54954 gadW 0/0 100.0 95.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00010 55323 56147 gadX 0/0 100.0 94.2 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00006 22689 23102 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00015 7853 8530 kdpE 0/0 100.0 95.4 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 78088 78471 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00026 20832 22079 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00026 17710 20832 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00026 14632 17709 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00010 49568 50725 mdtE 0/0 100.0 98.8 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00010 50750 53863 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00005 44635 45861 mdtG 0/0 100.0 98.5 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00005 34796 36004 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00002 284727 285959 mdtM 0/0 100.0 96.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00004 43659 44690 mdtN 0/0 100.0 96.4 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00004 41608 43659 mdtO 0/0 100.0 96.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00004 40145 41611 mdtP 0/0 100.0 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00011 113536 114010 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 179254 181002 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00080 220 1032 NDM-5 0/0 100.0 100.0 JN104597:114-927 New Delhi beta-lactamase NDM-5. carbapenem, cephalosporin, cephamycin, penam
contig00001 194864 195832 pmrF 0/0 100.0 98.1 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 5278 5934 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00070 2442 3257 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00052 2899 3759 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00052 317 1563 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 116800 118287 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00044 20936 22102 ugd 0/0 100.0 96.2 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 131725 133368 yojI 0/0 100.0 97.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1578 2381 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00070 742 1578 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 401770 403074 (Bla)AmpC1_Ecoli 0/0 100 96.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00004 110920 112053 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 24731 25888 (Bla)ampH_Ecoli 0/0 100 96.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00052 6580 7455 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00080 220 1032 (Bla)blaNDM-5 0/0 100 100.0 JN104597:1-813 (Bla)blaNDM-5 NA
contig00052 2899 3759 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00015 50396 52297 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00057 5278 5934 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00070 2442 3257 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00052 317 1591 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00073 181 654 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1578 2405 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00070 742 1578 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00052 6580 7455 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00004 110920 112053 blaEC-8 0/0 100 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig00080 220 1032 blaNDM-5 0/0 100 100.0 NG_049337.1 subclass B1 metallo-beta-lactamase NDM-5 CARBAPENEM
contig00052 2899 3759 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00080 1036 1401 ble-MBL 0/0 100 100.0 NG_047559.1 bleomycin binding protein Ble-MBL BLEOMYCIN
contig00073 181 654 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00057 5278 5934 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00070 2442 3257 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00052 392 1591 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00033 16154 17347 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00033 12982 16131 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00011 134717 137830 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00008 163230 164387 ACRE 0/0 100.0 98.4 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00008 164399 167503 ACRF 0/0 100.0 97.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00008 162169 162831 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 24731 25888 AMPH 0/0 100.0 96.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00070 1578 2405 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00070 742 1578 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00026 34014 35866 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 138999 139818 BACA 0/0 99.8 96.7 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00026 11097 11819 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00026 11816 13219 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 105265 106455 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00004 110920 112053 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00080 1036 1401 BRP 0/0 100.0 100.0 MEG_1477 Drugs:Glycopeptides:Bleomycin_resistance_protein:BRP NA
contig00029 38790 40163 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00029 40160 40858 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 15391 16023 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00073 181 654 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00012 60401 61573 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00012 61590 63128 EMRB 0/0 100.0 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00037 24611 25801 EMRD 0/0 100.0 97.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 338432 339595 EMRK 0/0 100.0 98.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00012 59744 60274 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 336894 338432 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00004 67358 69001 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 340630 344223 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00065 935 4528 EVGS 0/0 100.0 97.0 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00010 54226 54954 GADW 0/0 100.0 97.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00010 55323 56147 GADX 0/0 100.0 94.2 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00006 22689 23102 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00015 7853 8530 KDPE 0/0 100.0 95.4 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 78082 78471 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 77633 78067 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00014 32376 33608 MDFA 0/0 100.0 98.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00026 20832 22079 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00026 17710 20832 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00026 14632 17709 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00010 49568 50725 MDTE 0/0 100.0 98.8 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00010 50750 53863 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00005 44635 45861 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00005 34796 36004 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00023 35467 35796 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00023 35115 35480 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00003 280971 282343 MDTK 0/0 99.9 98.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00002 284727 285959 MDTM 0/0 100.0 96.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00004 43659 44690 MDTN 0/0 100.0 96.4 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00004 41608 43659 MDTO 0/0 100.0 96.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00004 40145 41611 MDTP 0/0 100.0 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00011 113536 114010 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 179254 181002 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00080 220 1032 NDM 0/0 100.0 100.0 MEG_4147 Drugs:betalactams:Class_B_betalactamases:NDM NA
contig00015 50396 52297 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 401770 403074 PBP4B 0/0 100.0 96.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 194864 195832 PMRF 0/0 100.0 98.1 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00057 5278 5934 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00002 233158 234027 ROBA 0/0 100.0 99.5 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00004 18179 18501 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00070 2442 3257 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00052 2881 4126 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00052 317 1591 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00044 20936 22102 UGD 0/0 100.0 96.2 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 131725 133368 YOGI 0/0 100.0 97.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID178
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00058 1443 2231 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00031 29159 29995 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00072 427 1302 blaCTX-M-27_1 0/0 100 100.0 AY156923 blaCTX-M-27 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00031 28327 28809 dfrA14_5 0/0 100 99.8 DQ388123 dfrA14 Trimethoprim
contig00058 839 1312 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00079 266 1029 erm(B)_18 2/2 100 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00003 66772 68004 mdf(A)_1 0/0 100 98.3 Y08743 mdf(A)
contig00085 67 997 mph(A)_2 2/10 100 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00058 2751 3617 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00031 26912 27727 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00067 1356 2561 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00058 1443 2231 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00006 89136 92285 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 339529 342642 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00005 289450 290607 acrE 0/0 100.0 98.2 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 290619 293723 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 288389 289051 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00031 29159 29995 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00005 75623 76442 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00014 63311 64032 baeR 0/0 99.9 97.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00014 64029 65432 baeS 0/0 100.0 92.2 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00017 22665 24038 cpxA 0/0 100.0 98.9 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15337 15969 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00072 427 1302 CTX-M-27 0/0 100.0 100.0 AY156923:0-876 CTX-M-27 is a beta-lactamase found in Escherichia coli cephalosporin
contig00031 28327 28809 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00058 839 1312 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00013 55312 56484 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00013 56501 58039 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 241672 242727 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00013 54655 55185 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 240134 241672 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00009 175498 177141 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00079 292 1037 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00006 87920 89113 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 134704 135837 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 304996 306300 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00006 178534 179691 Escherichia_coli_ampH 0/0 100.0 97.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00006 3833 4165 Escherichia_coli_emrE 0/0 100.0 99.4 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00003 66772 68004 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 243250 243864 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 243869 247462 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 194552 195280 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 195649 196473 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00027 1492 1905 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00003 245281 245958 kdpE 0/0 100.0 95.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00028 27851 28234 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00014 73045 74292 mdtA 0/0 100.0 96.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00014 69923 73045 mdtB 0/0 100.0 96.9 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00014 66845 69922 mdtC 0/0 100.0 96.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 189894 191051 mdtE 0/0 100.0 99.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 191076 194189 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00007 186100 187326 mdtG 0/0 100.0 98.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00007 195957 197165 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00004 287427 288638 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00009 145286 146317 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00009 143235 145286 mdtO 0/0 100.0 96.6 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00009 141772 143238 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00085 67 969 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00001 363349 363823 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00007 51564 53312 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 137292 138260 pmrF 0/0 100.0 97.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00058 2778 3617 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00031 26912 27727 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00067 1356 2561 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00005 53808 55295 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00034 4269 5435 ugd 0/0 100.0 97.3 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 75471 77114 yojI 0/0 100.0 97.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00058 1443 2231 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00031 29159 29995 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 304996 306300 (Bla)AmpC1_Ecoli 0/0 100.0 95.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00011 134704 135837 (Bla)AmpC2_Ecoli 0/0 100.0 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 178534 179691 (Bla)ampH_Ecoli 0/0 100.0 97.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00072 427 1302 (Bla)blaCTX-M-27 0/0 100.0 100.0 AY156923:1-876 (Bla)blaCTX-M-27 NA
contig00003 299814 301715 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00079 292 1029 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00085 67 969 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00058 2778 3617 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00031 26912 27727 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00067 1356 2561 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00031 28336 28809 (Tmt)dfrA14 0/0 100.0 99.8 GU726917:72-545 (Tmt)dfrA14 NA
contig00058 839 1312 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00058 1443 2231 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00031 29159 29995 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00072 427 1302 blaCTX-M-27 0/0 100 100.0 NG_048976.1 class A extended-spectrum beta-lactamase CTX-M-27 CEPHALOSPORIN
contig00011 134704 135837 blaEC-19 0/0 100 99.9 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00031 28336 28809 dfrA14 0/0 100 100.0 NG_047696.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00058 839 1312 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00079 292 1029 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00085 67 997 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00058 2778 3617 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00031 26912 27727 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00067 1356 2561 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 87920 89113 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 89136 92285 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 339529 342642 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00005 289450 290607 ACRE 0/0 100.0 98.2 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00005 290619 293723 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00005 288389 289051 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 178534 179691 AMPH 0/0 100.0 97.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00058 1443 2231 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00031 29159 29995 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00014 85900 87753 ASMA 0/0 100.0 97.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 75623 76442 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00014 63311 64032 BAER 0/0 99.9 97.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00014 64029 65432 BAES 0/0 100.0 92.2 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 49008 50198 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00011 134704 135837 BLAEC 0/0 100.0 99.9 MEG_1277 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00017 21970 22668 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00017 22665 24038 CPXAR 0/0 100.0 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15337 15969 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00072 405 1308 CTX 0/0 100.0 99.8 MEG_2401 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00072 1337 2279 CTX 0/0 100.0 100.0 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00031 28336 28809 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00058 839 1312 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00013 55312 56484 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00013 56501 58039 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 89688 90878 EMRD 0/0 100.0 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 241672 242835 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00013 54655 55185 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 240134 241672 EMRY 0/0 100.0 98.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00009 175498 177141 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00079 266 1029 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00001 243869 247462 EVGS 0/0 100.0 97.1 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 194552 195280 GADW 0/0 100.0 97.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 195649 196473 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00027 1492 1905 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00003 245281 245958 KDPE 0/0 100.0 95.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00028 27845 28234 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00028 27396 27830 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 66772 68004 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00014 73045 74292 MDTA 0/0 100.0 96.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00014 69923 73045 MDTB 0/0 100.0 96.9 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00014 66845 69922 MDTC 0/0 100.0 96.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 189894 191051 MDTE 0/0 100.0 99.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 191076 194189 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00007 186100 187326 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00007 195957 197165 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 326152 326481 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 325800 326165 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 258799 260171 MDTK 0/0 99.9 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00004 287427 288638 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00009 145286 146317 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00009 143235 145286 MDTO 0/0 100.0 96.6 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00009 141772 143238 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00085 67 997 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00001 363349 363823 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00007 51564 53312 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00006 3833 4165 MVRC 0/0 100.0 99.4 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00003 299814 301715 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 304996 306300 PBP4B 0/0 100.0 95.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 137292 138260 PMRF 0/0 100.0 97.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00004 238073 238942 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00009 121249 121571 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00058 2777 3744 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00031 26912 27727 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00067 1356 2561 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00034 4269 5435 UGD 0/0 100.0 97.3 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 75471 77114 YOGI 0/0 100.0 97.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID182
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00083 323 1159 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00003 91983 92858 blaCTX-M-55_1 0/0 100 100.0 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00083 1509 1991 dfrA14_5 0/0 100 99.8 DQ388123 dfrA14 Trimethoprim
contig00012 30613 31845 mdf(A)_1 0/0 100 98.8 Y08743 mdf(A)
contig00083 2591 3406 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00083 6757 8031 tet(A)_6 0/0 100 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 39451 42600 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 38195 41308 acrD 0/0 100.0 99.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00033 4929 6086 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00033 1813 4917 acrF 0/0 100.0 99.2 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00033 6485 7147 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00083 323 1159 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00021 65667 66488 bacA 0/0 100.0 99.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00004 97198 97920 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00004 95798 97201 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00015 61258 62631 cpxA 0/0 100.0 98.9 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00013 14935 15567 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00003 91983 92858 CTX-M-55 0/0 100.0 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00083 1509 1991 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00011 25850 27022 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00011 27039 28577 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00029 5169 6224 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00011 25193 25723 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00029 3631 5169 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00039 7712 9355 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00006 38235 39428 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00036 31253 32386 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00054 10718 12022 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00006 127461 128618 Escherichia_coli_ampH 0/0 100.0 99.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00012 30613 31845 Escherichia_coli_mdfA 0/0 100.0 97.2 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00029 6748 7362 evgA 0/0 100.0 99.8 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00029 7367 10960 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00047 2613 3341 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00047 1421 2245 gadX 0/0 100.0 99.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00009 62464 62877 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00008 5503 6180 kdpE 0/0 100.0 99.8 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00035 29821 30204 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00004 86938 88185 mdtA 0/0 100.0 92.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00004 88185 91307 mdtB 0/0 100.0 94.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00004 91308 94385 mdtC 0/0 100.0 99.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00047 6842 7999 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00047 3704 6817 mdtF 0/0 100.0 99.9 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00014 82588 83814 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00014 72749 73957 mdtH 0/0 100.0 97.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00010 69982 71193 mdtM 0/0 98.3 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00053 27191 28222 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00053 25140 27191 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00053 23677 25143 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00022 17041 17517 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00016 51216 52964 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00026 14612 15580 pmrF 0/0 100.0 98.2 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00083 2591 3406 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00083 6757 8031 tet(A) 0/0 100.0 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00021 41802 43289 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 48832 49998 ugd 0/0 100.0 96.7 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00085 4400 6043 yojI 0/0 100.0 98.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00083 323 1159 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00054 10718 12022 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00036 31253 32386 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00006 127461 128618 (Bla)ampH_Ecoli 0/0 100.0 99.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00003 91983 92858 (Bla)blaCTX-M-55 0/0 100.0 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00008 57889 59790 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00083 2591 3406 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00083 6785 8031 (Tet)tetA 0/0 97.8 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00083 8062 8712 (Tet)tetR 0/0 100.0 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00083 1509 1982 (Tmt)dfrA14 0/0 100.0 99.8 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00083 323 1159 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00003 91983 92858 blaCTX-M-55 0/0 100 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00036 31253 32386 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00083 1509 1982 dfrA14 0/0 100 100.0 NG_047696.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00083 2591 3406 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00083 6757 7956 tet(A) 0/0 100 100.0 NG_048153.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 38235 39428 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00006 39451 42600 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00022 38195 41308 ACRD 0/0 100.0 99.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00033 4929 6086 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00033 1813 4917 ACRF 0/0 100.0 99.2 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00033 6485 7147 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00006 127461 128618 AMPH 0/0 100.0 99.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00083 323 1159 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00021 65667 66488 BACA 0/0 100.0 99.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00004 97198 97920 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00004 95798 97201 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00020 49257 50447 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00036 31253 32386 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00015 60563 61261 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00015 61258 62631 CPXAR 0/0 100.0 99.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 14935 15567 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00083 1509 1982 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00011 25850 27022 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00011 27039 28577 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00025 17886 19076 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00029 5169 6332 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00011 25193 25723 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00029 3631 5169 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00039 7712 9355 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00029 7367 10960 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00047 2613 3341 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00047 1421 2245 GADX 0/0 100.0 99.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00009 62464 62877 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00008 5503 6180 KDPE 0/0 100.0 99.8 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00035 29815 30204 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00035 29367 29801 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00012 30613 31845 MDFA 0/0 100.0 98.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00004 86938 88185 MDTA 0/0 100.0 92.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00004 88185 91307 MDTB 0/0 100.0 94.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00004 91308 94385 MDTC 0/0 100.0 99.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00047 6842 7999 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00047 3704 6817 MDTF 0/0 100.0 99.9 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00014 82588 83814 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00014 72749 73957 MDTH 0/0 100.0 97.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00061 19868 20197 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00061 20184 20549 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00019 30650 32023 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00010 69982 71193 MDTM 0/0 98.3 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00053 27191 28222 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00053 25140 27191 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00053 23677 25143 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00022 17041 17517 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00016 51216 52964 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00008 57889 59790 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00054 10718 12022 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00026 14612 15580 PMRF 0/0 100.0 98.2 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00010 21727 22596 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00053 1285 1607 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00083 2591 3406 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00083 6757 8031 TETA 0/0 100.0 100.0 MEG_7025 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00004 48832 49998 UGD 0/0 100.0 96.7 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00085 4400 6043 YOGI 0/0 100.0 98.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID186
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 231391 232266 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00024 26130 27362 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00002 226094 226750 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 277506 278228 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 278225 279628 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 22569 23942 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00037 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00002 231391 232266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00001 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00001 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00001 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00013 115182 116825 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00010 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 50362 51495 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00010 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00008 136225 136557 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00024 26130 27362 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00012 156374 157102 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00012 157470 158294 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00005 158443 158856 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00007 8327 8999 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 29294 29677 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 287241 288488 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 284119 287241 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 281041 284118 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00012 151716 152873 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00012 152898 156011 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00003 188489 189715 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00003 198346 199554 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00013 91422 92453 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00013 89371 91422 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00013 87908 89374 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00003 51653 53401 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 76806 77774 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00002 226094 226750 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00004 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 344414 345580 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 124793 126436 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00023 50362 51495 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00010 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00002 231391 232266 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00007 60788 62689 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00002 226094 226750 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 231391 232266 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00023 50362 51495 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00002 226094 226750 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00010 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00004 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00002 300095 301947 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 277506 278228 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 278225 279628 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 151708 152898 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00023 50362 51495 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 21874 22572 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 22569 23942 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00037 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00001 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00001 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 27122 28312 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00001 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00013 115182 116825 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00012 156374 157102 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00012 157470 158294 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00005 158443 158856 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00007 8327 8999 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 29288 29677 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 28840 29274 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00024 26130 27362 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 287241 288488 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 284119 287241 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 281041 284118 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00012 151716 152873 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00012 152898 156011 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00003 188489 189715 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00003 198346 199554 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00017 68323 68652 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00017 68639 69004 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00009 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00013 91422 92453 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00013 89371 91422 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00013 87908 89374 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00003 51653 53401 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00008 136225 136557 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00007 60788 62689 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 76806 77774 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00002 226094 226750 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00018 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00013 65969 66291 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00002 344414 345580 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 124793 126436 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID187
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1544 2347 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00084 708 1544 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00057 12797 13672 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00091 3293 4153 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00125 181 663 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00016 13339 14571 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00057 7500 8156 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00084 2408 3223 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00091 711 1957 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 39727 42876 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 71689 74802 acrD 0/0 100.0 99.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00046 8641 9795 acrE 1/3 99.7 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00046 5525 8629 acrF 0/0 100.0 99.2 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00046 10194 10856 acrS 0/0 100.0 99.2 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00084 1544 2347 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00084 708 1544 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00002 175276 176097 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00021 24128 24850 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00021 24847 26250 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00012 94010 95383 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15081 15713 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00057 12797 13672 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00125 181 663 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00019 26696 27868 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00019 27885 29423 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00042 5045 6100 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00019 26039 26569 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00042 3507 5045 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00029 37368 39011 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 38511 39704 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 104703 105836 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00008 116489 117793 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.6 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00001 135618 136775 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00016 13339 14571 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00042 6624 7238 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00042 7243 10836 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00028 21921 22649 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00028 20729 21553 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00006 119180 119593 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00041 33575 33958 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00021 33863 35110 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00021 30741 33863 mdtB 0/0 100.0 97.6 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00021 27663 30740 mdtC 0/0 100.0 98.4 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00028 26150 27307 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00028 23012 26125 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00018 10295 11521 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00018 20150 21358 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00061 1118 2350 mdtM 0/0 100.0 97.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00029 6699 7730 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00029 4648 6699 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00029 3185 4651 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 50480 50956 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00009 21382 23130 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00005 62225 63193 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 7500 8156 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00084 2408 3223 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00091 3293 4153 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00091 711 1957 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00002 151411 152898 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00033 47406 48572 ugd 0/0 100.0 95.5 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00005 2099 3742 yojI 0/0 100.0 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1544 2347 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00084 708 1544 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00008 116489 117793 (Bla)AmpC1_Ecoli 0/0 100 98.6 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 104703 105836 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 135618 136775 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00057 12797 13672 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00091 3293 4153 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60350 62251 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00057 7500 8156 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00084 2408 3223 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00091 711 1985 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00091 30 680 (Tet)tetR 0/0 100 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00125 181 654 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00084 1544 2371 aph(3’’)-Ib 0/0 100 100 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00084 708 1544 aph(6)-Id 0/0 100 100 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00057 12797 13672 blaCTX-M-15 0/0 100 100 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 104703 105836 blaEC 0/0 100 100 NG_047494.1 BlaEC family class C beta-lactamase BETA-LACTAM
contig00091 3293 4153 blaTEM-1 0/0 100 100 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00125 181 654 dfrA14 0/0 100 100 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00057 7500 8156 qnrS1 0/0 100 100 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00084 2408 3223 sul2 0/0 100 100 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00091 786 1985 tet(A) 0/0 100 100 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 38511 39704 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 39727 42876 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00008 71689 74802 ACRD 0/0 100.0 99.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00046 8641 9795 ACRE 1/3 99.7 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00046 5525 8629 ACRF 0/0 100.0 99.2 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00046 10194 10856 ACRS 0/0 100.0 99.2 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00010 104703 105836 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00001 135618 136775 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00084 1544 2371 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00084 708 1544 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00021 47523 49375 ASMA 0/0 100.0 98.5 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00002 175276 176097 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00021 24128 24850 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00021 24847 26250 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00015 86600 87790 BCR 0/0 100.0 99.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00012 93315 94013 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 94010 95383 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15081 15713 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00125 181 654 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00019 26696 27868 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00019 27885 29423 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 91678 92868 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00042 5045 6208 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00019 26039 26569 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00042 3507 5045 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00029 37368 39011 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00042 7243 10836 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00028 21921 22649 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00028 20729 21553 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00006 119180 119593 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00041 33569 33958 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00041 33121 33555 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00016 13339 14571 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00021 33863 35110 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00021 30741 33863 MDTB 0/0 100.0 97.6 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00021 27663 30740 MDTC 0/0 100.0 98.4 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00028 26150 27307 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00028 23012 26125 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00018 10295 11521 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00018 20150 21358 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00032 34222 34551 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00032 34538 34903 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00031 2433 3806 MDTK 0/0 100.0 98.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00061 1118 2350 MDTM 0/0 100.0 97.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00029 6699 7730 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00029 4648 6699 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00029 3185 4651 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00008 50480 50956 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00009 21382 23130 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 60350 62251 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00008 116489 117793 PBP4B 0/0 100.0 98.6 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00005 62225 63193 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00057 7500 8156 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00023 49695 50564 ROBA 0/0 100.0 100.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00022 18450 18773 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00084 2408 3223 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00091 3275 4520 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00091 711 1985 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00033 47406 48572 UGD 0/0 100.0 95.5 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00005 2099 3742 YOGI 0/0 100.0 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID195
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00056 137 925 aadA5_1 0/0 100.0 100 AF137361 aadA5 Streptomycin
contig00015 65021 65896 blaCTX-M-55_1 0/0 100.0 100 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00056 1056 1529 dfrA17_1 0/0 100.0 100 FJ460238 dfrA17 Trimethoprim
contig00029 30168 31400 mdf(A)_1 0/0 100.0 98 Y08743 mdf(A)
contig00047 3615 4271 qnrS1_1 0/0 100.0 100 AB187515 qnrS1 Ciprofloxacin
contig00043 1442 2257 sul2_2 0/0 100.0 100 AY034138 sul2 Sulfamethoxazole
contig00046 3261 4507 tet(A)_6 0/0 97.8 100 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00056 137 925 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00026 40300 43449 acrB 0/0 100.0 99.3 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 519811 522924 acrD 0/0 100.0 98.9 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00011 138859 140016 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 140028 143132 acrF 0/0 100.0 98.8 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00011 137798 138460 acrS 0/0 100.0 99.2 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00013 60022 60841 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 129169 129891 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 127769 129172 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00024 22408 23781 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00003 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00015 65021 65896 CTX-M-55 0/0 100.0 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00056 1056 1529 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00010 51982 53154 emrA 0/0 100.0 98.4 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00010 53171 54709 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 428091 429146 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00010 51325 51855 emrR 0/0 100.0 99.6 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 426553 428091 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00028 18477 20120 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00026 43472 44665 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00018 98249 99382 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 487410 488714 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 46202 47359 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00029 30168 31400 Escherichia_coli_mdfA 0/0 100.0 96.5 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 429670 430284 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 430289 433882 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00003 184889 185617 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00003 185985 186809 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 5176 5589 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 8052 8724 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00017 87066 87449 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 118909 120156 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 120156 123278 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 123279 126356 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00003 180231 181388 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00003 181413 184526 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00006 156278 157504 mdtG 0/0 100.0 100.0 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00006 146439 147647 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00019 75674 76906 mdtM 0/0 100.0 96.2 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00020 4215 5246 mdtN 0/0 100.0 97.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00020 5246 7297 mdtO 0/0 100.0 98.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00020 7294 8760 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00001 544210 544686 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00005 51497 53245 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00001 324356 325324 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00047 3615 4271 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00043 1442 2257 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00046 3261 4507 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00013 36176 37663 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 275638 277281 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00056 137 925 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00001 487410 488714 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00018 98249 99382 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 46202 47359 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00015 65021 65896 (Bla)blaCTX-M-55 0/0 100 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00012 60514 62415 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00047 3615 4271 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00043 1442 2257 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00046 3233 4507 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00046 4538 5188 (Tet)tetR 0/0 100 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00056 1056 1529 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00056 137 925 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00015 65021 65896 blaCTX-M-55 0/0 100 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00018 98249 99382 blaEC-18 0/0 100 99.7 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00056 1056 1529 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00047 3615 4271 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00043 1442 2257 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00046 3233 4432 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00026 43472 44665 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00026 40300 43449 ACRB 0/0 100.0 99.3 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 519811 522924 ACRD 0/0 100.0 98.9 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00011 138859 140016 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00011 140028 143132 ACRF 0/0 100.0 98.8 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00011 137798 138460 ACRS 0/0 100.0 99.2 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 46202 47359 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00056 137 925 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00001 105450 107302 ASMA 0/0 100.0 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00013 60022 60841 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 129169 129891 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 127769 129172 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 249176 250366 BCR 0/0 100.0 97.5 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00018 98249 99382 BLAEC 0/0 100.0 99.7 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00024 21713 22411 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00024 22408 23781 CPXAR 0/0 100.0 99.6 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00003 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00056 1056 1529 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00010 51982 53154 EMRA 0/0 100.0 98.4 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00010 53171 54709 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00004 103365 104555 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 428091 429254 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00010 51325 51855 EMRR 0/0 100.0 99.6 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 426553 428091 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00028 18477 20120 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 430289 433882 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00003 184889 185617 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00003 185985 186809 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 5176 5589 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 8052 8724 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00017 87060 87449 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00017 86612 87046 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00029 30168 31400 MDFA 0/0 100.0 98.1 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 118909 120156 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 120156 123278 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 123279 126356 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00003 180231 181388 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00003 181413 184526 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00006 156278 157504 MDTG 0/0 100.0 100.0 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00006 146439 147647 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 377209 377538 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 376857 377222 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 305718 307091 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00019 75674 76906 MDTM 0/0 100.0 96.2 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00020 4215 5246 MDTN 0/0 100.0 97.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00020 5246 7297 MDTO 0/0 100.0 98.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00020 7294 8760 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00001 544210 544686 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00005 51497 53245 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00012 60514 62415 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 487410 488714 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 324356 325324 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00047 3615 4271 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00019 11911 12780 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00020 30375 30698 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00043 1442 2257 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00046 3233 4507 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 275638 277281 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID197
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00081 1694 2554 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00078 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00070 1702 2490 aadA5_1 0/0 100 99.9 AF137361 aadA5 Streptomycin
contig00069 1222 2097 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00078 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00070 2621 3094 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 147439 148671 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00099 69 990 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00070 316 1182 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00066 1998 3203 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00081 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00078 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00070 1702 2490 aadA5 0/0 100.0 99.9 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00005 41368 44517 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 148083 151196 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00063 5844 8948 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00036 602 1264 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 70353 71172 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00019 58159 58881 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00019 58878 60281 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00013 61576 62949 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 46847 47479 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00069 1222 2097 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00070 2621 3094 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00009 58703 59875 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00009 59892 61430 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 178458 179513 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00009 58046 58576 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 176920 178458 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00006 81600 83243 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 40152 41345 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 38239 39372 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00051 25613 26911 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 129484 130641 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00001 147439 148671 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 180037 180651 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 180656 184249 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00040 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00040 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00010 40941 41354 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00015 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00003 150943 151326 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00019 67894 69141 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00019 64772 67894 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00019 61694 64771 mdtC 0/0 100.0 99.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00040 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00040 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00035 16609 17835 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00035 26464 27672 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00023 70066 71298 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00006 112981 114012 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00006 114012 116063 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 116060 117526 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00099 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00004 126902 127376 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 230387 232135 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00078 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00002 63945 64913 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00070 316 1155 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00066 1998 3203 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00011 46586 48073 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 2069 3712 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00081 1694 2554 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00070 1702 2490 (AGly)aadA5 0/0 100.0 99.9 AF137361:64-852 (AGly)aadA5 NA
contig00051 25613 26911 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00006 38239 39372 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 129484 130641 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00069 1222 2097 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00078 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00015 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00099 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00070 316 1155 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00066 1998 3203 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00070 2621 3094 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00081 1694 2554 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00078 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00070 1702 2490 aadA5 0/0 100 99.9 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00069 1222 2097 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00006 38239 39372 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00078 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00070 2621 3094 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00099 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00070 316 1155 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00066 1998 3203 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00081 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 40152 41345 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 41368 44517 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00004 148083 151196 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00063 5844 8948 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00036 602 1264 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 129484 130641 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00070 1702 2490 ANT3-DPRIME 0/0 100.0 99.9 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00019 81481 83334 ASMA 0/0 100.0 96.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00011 70353 71172 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00019 58159 58881 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00019 58878 60281 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00017 85725 86915 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00006 38239 39372 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00013 60881 61579 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 61576 62949 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 46847 47479 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00101 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00070 2621 3094 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00009 58703 59875 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00009 59892 61430 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00038 43241 44431 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 178458 179621 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00009 58046 58576 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 176920 178458 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00006 81600 83243 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 180656 184249 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00040 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00040 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00010 40941 41354 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00015 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00003 150943 151332 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00003 151346 151780 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 147439 148671 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00019 67894 69141 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00019 64772 67894 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00019 61694 64771 MDTC 0/0 100.0 99.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00040 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00040 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00035 16609 17835 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00035 26464 27672 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00003 118221 118550 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00003 117869 118234 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00003 46467 47840 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00023 70066 71298 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00006 112981 114012 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00006 114012 116063 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00006 116060 117526 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00099 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00004 126902 127376 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 230387 232135 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00078 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00015 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00051 25613 26911 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 63945 64913 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00023 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00006 139143 139466 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00070 189 1156 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00066 1998 3203 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00066 3997 4413 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00002 2069 3712 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID199
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 7566 8367 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00006 121783 122658 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00034 1 660 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00034 6671 7168 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00051 266 1029 erm(B)_18 2/2 100.0 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00007 90087 91319 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00058 69 999 mph(A)_2 2/10 100.0 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00034 8845 9711 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00050 802 2007 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 7588 8367 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00004 215392 218541 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 135682 138795 acrD 0/0 100.0 99.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00001 8755 9912 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00001 5639 8743 acrF 0/0 100.0 98.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00001 10311 10973 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 219264 220083 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00015 48811 49533 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00015 47411 48814 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00034 1 660 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00013 67580 68953 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00012 15257 15889 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00006 121783 122658 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00034 6671 7168 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00008 58784 59956 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00008 59973 61511 emrB 0/0 100.0 99.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00010 168957 170012 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00008 58127 58657 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00010 167419 168957 emrY 0/0 100.0 98.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00016 93098 94741 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00051 292 1037 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00004 214176 215369 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00016 49758 50891 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00011 169913 171217 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00004 303413 304570 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00007 90087 91319 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00010 170536 171150 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00010 171155 174748 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00012 182191 182919 gadW 0/0 100.0 94.8 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00012 183287 184111 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00002 177105 177518 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00004 8162 8834 kdpE 0/0 99.3 97.3 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00005 238627 239010 marA 0/0 100.0 99.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00015 38551 39798 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00015 39798 42920 mdtB 0/0 100.0 98.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00015 42921 45998 mdtC 0/0 100.0 98.2 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00012 177533 178690 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00012 178715 181828 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00002 379153 380379 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00002 369314 370522 mdtH 0/0 100.0 98.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 298836 300068 mdtM 0/0 100.0 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00014 4267 5298 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00014 5298 7349 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00014 7346 8812 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00058 69 971 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00011 113929 114403 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00017 24523 26271 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00010 57891 58859 pmrF 0/0 100.0 99.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00034 8872 9711 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00050 802 2007 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00001 242442 243929 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00010 2013 3656 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 7588 8367 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00011 169913 171217 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00016 49758 50891 (Bla)AmpC2_Ecoli 0/0 100.0 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00004 303413 304570 (Bla)ampH_Ecoli 0/0 100.0 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00006 121783 122658 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00004 60623 62524 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00051 292 1029 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00058 69 971 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00034 1 660 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00034 8872 9711 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00050 802 2007 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00034 6671 7168 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 7576 8367 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00006 121783 122658 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00016 49758 50891 blaEC-18 0/0 100 99.2 NG_049083.1 class C extended-spectrum beta-lactamase EC-18 CEPHALOSPORIN
contig00034 1 660 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00034 6671 7168 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00051 292 1029 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00058 69 999 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00034 8872 9711 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00050 802 2007 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 214176 215369 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00004 215392 218541 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00011 135682 138795 ACRD 0/0 100.0 99.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00001 8755 9912 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00001 5639 8743 ACRF 0/0 100.0 98.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00001 10311 10973 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00004 303413 304570 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00034 7566 8367 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00015 24763 26616 ASMA 0/0 100.0 96.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00001 219264 220083 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00015 48811 49533 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00015 47411 48814 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00020 23471 24661 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00016 49758 50891 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00034 1 660 CATA 0/0 100.0 100.0 MEG_1584 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00013 66885 67583 CPXAR 0/0 100.0 99.7 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00013 67580 68953 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 15257 15889 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00034 6671 7168 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00008 58784 59956 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00008 59973 61511 EMRB 0/0 100.0 99.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 174944 176134 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00010 168957 170120 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00008 58127 58657 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00010 167419 168957 EMRY 0/0 100.0 98.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00016 93098 94741 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00051 266 1029 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00010 171155 174748 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00012 182191 182919 GADW 0/0 100.0 99.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00012 183287 184111 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00002 177105 177518 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00004 8162 8834 KDPE 0/0 99.3 97.3 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00005 238627 239016 MARA 0/0 100.0 99.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00005 239030 239464 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00007 90087 91319 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00015 38551 39798 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00015 39798 42920 MDTB 0/0 100.0 98.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00015 42921 45998 MDTC 0/0 100.0 98.2 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00012 177533 178690 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00012 178715 181828 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00002 379153 380379 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00002 369314 370522 MDTH 0/0 100.0 98.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00005 199652 199981 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00005 199300 199665 MDTJ 0/0 100.0 98.1 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 127979 129352 MDTK 0/0 100.0 99.1 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 298836 300068 MDTM 0/0 100.0 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00014 4267 5298 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00014 5298 7349 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00014 7346 8812 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00058 69 999 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00011 113929 114403 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00017 24523 26271 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00004 60623 62524 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00011 169913 171217 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00010 57891 58859 PMRF 0/0 100.0 99.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 229077 229946 ROBA 0/0 100.0 99.4 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00014 30428 30750 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00034 8871 9838 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00050 802 2007 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00010 2013 3656 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID208
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00581 1694 2554 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00620 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00612 94 882 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00014 106338 107213 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00297 5698 6843 blaMIR-6_1 0/0 100 99.7 JQ664733 blaMIR-6
contig00620 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00003 49 909 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00705 945 1418 dfrA15_2 0/0 100 100.0 AF221900 dfrA15 Trimethoprim
contig00612 1013 1486 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00644 266 1029 erm(B)_18 2/2 100 99.0 X66468 erm(B) Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin_IA, Virginiamycin_S
contig00597 1819 2244 fosA_7 0/0 100 95.8 AEXB01000013 fosA Fosfomycin
contig00004 66771 68003 mdf(A)_1 0/0 100 98.3 Y08743 mdf(A)
contig00753 67 997 mph(A)_2 2/10 100 98.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00525 385 1251 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00581 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00620 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00612 94 882 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00002 118149 121298 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 63159 66272 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00008 8762 9919 acrE 0/0 100.0 98.2 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 5646 8750 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00008 10318 10980 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00017 26444 27263 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00063 10730 11451 baeR 0/0 99.9 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00063 9330 10733 baeS 0/0 100.0 96.4 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00019 22628 24001 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00014 15001 15633 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00014 106338 107213 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00705 945 1418 dfrA15 0/0 100.0 100.0 KF534911:39-513 dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00612 1013 1486 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00023 54374 55546 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00023 55563 57101 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 166248 167303 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00023 53717 54247 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 164710 166248 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00047 12043 13686 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00644 292 1037 ErmB 1/1 99.9 99.2 AF242872.1:2131-2878 ErmB confers the MLSb phenotype. Similar to ErmC expression of ErmB is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present it binds the leader peptide causing a change in conformation allowing for the expression of ErmB. lincosamide, macrolide, streptogramin
contig00002 121321 122514 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 129751 130884 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00010 28626 29930 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00002 30743 31900 Escherichia_coli_ampH 0/0 100.0 97.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00004 66771 68003 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 167826 168440 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 168445 172038 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00597 1819 2244 FosA2 0/0 100.0 91.8 EU487198:216-642 An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. fosfomycin
contig00003 90677 91405 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00003 91774 92598 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00087 1492 1905 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 69445 70122 kdpE 0/0 100.0 95.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00041 27850 28233 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00063 470 1717 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00063 1717 4839 mdtB 0/0 100.0 96.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00063 4840 7917 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00003 86019 87176 mdtE 0/0 100.0 99.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00003 87201 90314 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00022 73604 74830 mdtG 0/0 100.0 98.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00022 63765 64973 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00025 37676 38908 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00027 17076 18107 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00027 18107 20158 mdtO 0/0 100.0 96.6 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00027 20155 21621 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00297 5698 6843 MIR-6 0/0 100.0 99.7 JQ664733:0-1146 MIR-6 is a beta-lactamase. From the Lahey list of MIR beta-lactamases. cephalosporin, monobactam
contig00753 67 969 mphA 0/0 99.7 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00010 86979 87453 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00009 51469 53217 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00620 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 61868 62836 pmrF 0/0 100.0 97.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00307 4154 4505 ramA 0/0 93.9 93.2 JQ727668:0-375 RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00525 412 1251 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00003 49 909 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00017 4629 6116 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00160 11221 12387 ugd 0/0 100.0 96.4 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 47 1690 yojI 0/0 100.0 97.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00581 1694 2554 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00705 52 853 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00612 94 882 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00010 28626 29930 (Bla)AmpC1_Ecoli 0/0 100.0 95.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00005 129751 130884 (Bla)AmpC2_Ecoli 0/0 100.0 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00002 30743 31900 (Bla)ampH_Ecoli 0/0 100.0 97.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00014 106338 107213 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00297 5698 6843 (Bla)blaMIR-6 0/0 100.0 99.7 JQ664733:1-1146 (Bla)blaMIR-6 NA
contig00620 578 1408 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00003 49 909 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00088 11297 13198 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00597 1819 2244 (Fcyn)FosA2 0/0 100.0 91.8 EU487198:217-642 (Fcyn)FosA2 NA
contig00644 292 1029 (MLS)erm(B) 0/0 100.0 99.6 M11180:714-1451 (MLS)erm(B) NA
contig00753 67 969 (MLS)mph(A) 0/0 99.7 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00525 412 1251 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00705 945 1418 (Tmt)dfrA15b 0/0 100.0 99.2 AJ867237:177-650 (Tmt)dfrA15b NA
contig00612 1013 1486 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00581 1694 2554 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00620 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00705 52 843 aadA1 0/0 100 99.9 NG_052266.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00612 94 882 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00014 106338 107213 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00005 129751 130884 blaEC-19 0/0 100 99.9 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00297 5698 6843 blaMIR-20 0/0 100 100.0 NG_050722.1 cephalosporin-hydrolyzing class C beta-lactamase MIR-20 CEPHALOSPORIN
contig00620 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00003 49 909 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00705 945 1418 dfrA15 0/0 100 100.0 NG_047702.1 trimethoprim-resistant dihydrofolate reductase DfrA15 TRIMETHOPRIM
contig00612 1013 1486 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00644 292 1029 erm(B) 0/0 100 99.9 NG_047804.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
contig00597 1819 2244 fosA 0/0 100 95.5 NG_050405.1 fosfomycin resistance glutathione transferase FosA FOSFOMYCIN
contig00753 67 997 mph(A) 2/10 100 98.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00163 5314 8433 oqxB9 0/0 99 90.1 NG_050458.1 multidrug efflux RND transporter permease subunit OqxB9 PHENICOL, QUINOLONE
contig00525 412 1251 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00581 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00002 121321 122514 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00002 118149 121298 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00010 63159 66272 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00008 8762 9919 ACRE 0/0 100.0 98.2 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00008 5646 8750 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00008 10318 10980 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00002 30743 31900 AMPH 0/0 100.0 97.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00612 94 882 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00705 52 853 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00035 11329 13181 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00017 26444 27263 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00063 10730 11451 BAER 0/0 99.9 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00063 9330 10733 BAES 0/0 100.0 96.4 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00024 49010 50200 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00005 129751 130884 BLAEC 0/0 100.0 99.9 MEG_1277 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00019 21933 22631 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 22628 24001 CPXAR 0/0 100.0 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00014 15001 15633 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00612 1013 1486 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00705 945 1418 DFRA 0/0 100.0 99.4 MEG_2492 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00023 54374 55546 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00023 55563 57101 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00018 89485 90675 EMRD 0/0 100.0 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 166248 167411 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00023 53717 54247 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 164710 166248 EMRY 0/0 100.0 98.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00047 12043 13686 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00644 266 1029 ERMB 2/2 100.0 99.0 MEG_2801 Drugs:MLS:23S_rRNA_methyltransferases:ERMB NA
contig00001 168445 172038 EVGS 0/0 100.0 97.1 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00597 1665 2244 FOSA 0/0 99.7 92.6 MEG_2990 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00003 90677 91405 GADW 0/0 100.0 97.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00003 91774 92598 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00087 1492 1905 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 69445 70122 KDPE 0/0 100.0 95.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00041 27844 28233 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00041 27395 27829 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00004 66771 68003 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00063 470 1717 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00063 1717 4839 MDTB 0/0 100.0 96.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00063 4840 7917 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00003 86019 87176 MDTE 0/0 100.0 99.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00003 87201 90314 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00022 73604 74830 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00022 63765 64973 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00050 21791 22120 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00050 22107 22472 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 86990 88362 MDTK 0/0 99.9 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00025 37676 38908 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00027 17076 18107 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00027 18107 20158 MDTO 0/0 100.0 96.6 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00027 20155 21621 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00297 5685 6844 MIR 0/0 100.0 99.4 MEG_3972 Drugs:betalactams:Class_C_betalactamases:MIR NA
contig00753 67 997 MPHA 2/10 100.0 98.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00010 86979 87453 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00009 51469 53217 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00163 5314 8433 OQXB 0/0 99.0 90.1 MEG_4359 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00620 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00088 11297 13198 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00010 28626 29930 PBP4B 0/0 100.0 95.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 61868 62836 PMRF 0/0 100.0 97.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00525 71 418 QACEDELTA1 0/0 100.0 100.0 MEG_5829 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 NA
contig00307 4154 4505 RAMA 0/0 93.9 93.2 MEG_6044 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA NA
contig00072 6646 7515 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00027 41822 42144 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00525 411 1378 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00160 11221 12387 UGD 0/0 100.0 96.4 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 47 1690 YOGI 0/0 100.0 97.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID214
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1406 2266 aac(3)-IId_1 0/0 100 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00109 1538 2137 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00085 2474 3262 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00087 5399 6178 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00087 4563 5399 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00090 1871 2746 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00109 577 1407 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00082 1940 2800 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00092 221 880 catA1_1 0/0 100 99.8 V00622 catA1 Chloramphenicol
contig00085 1870 2343 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00006 30138 31370 mdf(A)_1 0/0 100 99.9 Y08743 mdf(A)
contig00082 6011 6932 mph(A)_2 1/1 100 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00085 3782 4648 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00087 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00096 1065 2270 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1406 2266 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00109 1538 2137 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00085 2474 3262 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00005 186223 189372 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 40178 43291 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00075 5854 8958 acrF 0/0 100.0 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00036 601 1263 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00087 5399 6178 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00087 4563 5399 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00021 70354 71173 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00050 30161 30883 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00050 28761 30164 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00092 221 880 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00024 61576 62949 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15081 15713 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00090 1871 2746 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00085 1870 2343 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00011 47169 48341 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00011 48358 49896 emrB 0/0 100.0 98.6 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 178461 179516 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00011 46512 47042 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 176923 178461 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00013 67026 68669 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 189395 190588 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 38239 39372 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00055 25537 26835 Escherichia_coli_ampC1_beta-lactamase 0/0 99.5 96.1 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 100099 101256 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00054 24485 24817 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00006 30138 31370 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 180040 180654 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 180659 184252 evgS 0/0 100.0 96.8 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00041 1784 2512 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00041 592 1416 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00010 40941 41354 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00014 8068 8745 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 23178 23561 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00050 19901 21148 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00050 21148 24270 mdtB 0/0 100.0 97.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00050 24271 27348 mdtC 0/0 100.0 97.7 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00041 6013 7170 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00041 2875 5988 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00034 18399 19625 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00034 28254 29462 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00047 5118 6350 mdtM 0/0 100.0 100.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00013 98407 99438 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00013 99438 101489 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00013 101486 102952 mdtP 0/0 100.0 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00082 6027 6932 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00023 18997 19471 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 51374 53122 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00109 577 1407 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00002 63949 64917 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00085 3809 4648 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00087 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00082 1940 2800 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00096 1065 2270 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00021 46587 48074 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 2073 3716 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1406 2266 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00085 2474 3262 (AGly)aadA5 0/0 100.0 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00087 5399 6178 (AGly)strA 0/0 97.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00087 4563 5399 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00055 25537 26835 (Bla)AmpC1_Ecoli 0/0 99.5 96.1 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00022 38239 39372 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 100099 101256 (Bla)ampH_Ecoli 0/0 100.0 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00090 1871 2746 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00109 577 1407 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00082 1940 2800 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00014 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00082 6027 6932 (MLS)mph(A) 0/0 100.0 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00092 221 880 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig00085 3809 4648 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00087 85 900 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00096 1065 2270 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig00085 1870 2343 (Tmt)dfrA17 0/0 100.0 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1406 2266 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00109 1538 2092 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00085 2474 3262 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00087 5399 6178 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00087 4563 5399 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00090 1871 2746 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00022 38239 39372 blaEC-15 0/0 100.0 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00109 577 1407 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00082 1940 2800 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00092 221 880 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00085 1870 2343 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00082 6011 6932 mph(A) 1/1 100.0 99.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00085 3809 4648 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00087 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00096 1065 2270 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00093 1406 2266 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 189395 190588 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 186223 189372 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00023 40178 43291 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00075 5854 8958 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00036 601 1263 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 100099 101256 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00085 2474 3262 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00087 5399 6178 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00087 4563 5399 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00050 5782 7635 ASMA 0/0 100.0 96.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00021 70354 71173 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00050 30161 30883 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00050 28761 30164 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00018 67338 68528 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00022 38239 39372 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00092 210 880 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00024 60881 61579 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00024 61576 62949 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15081 15713 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00129 62 1004 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00085 1870 2343 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00011 47169 48341 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00011 48358 49896 EMRB 0/0 100.0 98.6 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00037 43176 44366 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 178461 179624 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00011 46512 47042 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 176923 178461 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00013 67026 68669 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 180659 184252 EVGS 0/0 100.0 97.2 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00041 1784 2512 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00041 592 1416 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00010 40941 41354 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00014 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 23172 23561 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 22724 23158 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00006 30138 31370 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00050 19901 21148 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00050 21148 24270 MDTB 0/0 100.0 97.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00050 24271 27348 MDTC 0/0 100.0 97.7 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00041 6013 7170 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00041 2875 5988 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00034 18399 19625 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00034 28254 29462 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00026 55954 56283 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00026 56270 56635 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00012 66257 67630 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00047 5118 6350 MDTM 0/0 100.0 100.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00013 98407 99438 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00013 99438 101489 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00013 101486 102952 MDTP 0/0 100.0 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00082 6011 6932 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00023 18997 19471 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 51374 53122 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00054 24485 24817 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00109 577 1407 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00014 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00055 25537 26835 PBP4B 0/0 99.5 96.1 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 63949 64917 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00056 21724 22593 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00043 35222 35545 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00085 3808 4775 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00087 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00096 1065 2270 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00002 2073 3716 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID224
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 11072 11932 aac(3)-IId_1 0/0 100.0 99.8 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00066 901 1702 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00015 65022 65897 blaCTX-M-55_1 0/0 100.0 100.0 DQ810789 blaCTX-M-55 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00049 5240 6100 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00068 1422 2081 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00066 6 503 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00041 30146 31378 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00066 8341 9262 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00066 2180 3046 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00077 800 2005 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 11072 11932 AAC(3)-IId 0/0 100 99.8 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00066 923 1702 aadA2 0/0 100 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00028 40844 43993 acrB 0/0 100 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 38956 42069 acrD 0/0 100 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00035 3717 4874 acrE 0/0 100 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00035 601 3705 acrF 0/0 100 100.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00035 5273 5935 acrS 0/0 100 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00029 66576 67397 bacA 0/0 100 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00021 57758 58480 baeR 0/0 100 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00021 56358 57761 baeS 0/0 100 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00068 1422 2081 catI 0/0 100 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00012 61537 62910 cpxA 0/0 100 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 15924 16556 CRP 0/0 100 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00015 65022 65897 CTX-M-55 0/0 100 100.0 DQ885477:0-876 CTX-M-55 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00066 6 503 dfrA12 0/0 100 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00002 58458 59630 emrA 0/0 100 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 59647 61185 emrB 0/0 100 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00009 121400 122455 emrK 0/0 100 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 57801 58331 emrR 0/0 100 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00009 119862 121400 emrY 0/0 100 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00016 99937 101580 eptA 0/0 100 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00028 39628 40821 Escherichia_coli_acrA 0/0 100 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00016 65396 66529 Escherichia_coli_ampC 0/0 100 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00011 73468 74772 Escherichia_coli_ampC1_beta-lactamase 0/0 100 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00019 55572 56729 Escherichia_coli_ampH 0/0 100 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00041 30146 31378 Escherichia_coli_mdfA 0/0 100 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00009 122978 123592 evgA 0/0 100 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00009 123597 127190 evgS 0/0 100 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00039 2609 3337 gadW 0/0 100 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00039 1418 2242 gadX 0/0 100 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00030 62969 63382 H-NS 0/0 100 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8068 8745 kdpE 0/0 100 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 230724 231107 marA 0/0 100 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00021 47498 48745 mdtA 0/0 100 99.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00021 48745 51867 mdtB 0/0 100 97.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00021 51868 54945 mdtC 0/0 100 98.4 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00039 6838 7995 mdtE 0/0 100 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00039 3700 6813 mdtF 0/0 100 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00018 16915 18141 mdtG 0/0 100 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00018 26770 27978 mdtH 0/0 100 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00031 21875 22906 mdtN 0/0 100 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00031 22906 24957 mdtO 0/0 100 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00031 24954 26420 mdtP 0/0 100 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00066 8357 9262 mphA 0/0 100 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00011 17794 18270 mphB 0/0 100 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 51432 53180 msbA 0/0 100 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00009 17667 18635 pmrF 0/0 100 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00066 2207 3046 sul1 0/0 100 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00049 5240 6100 TEM-1 0/0 100 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00077 800 2005 tet(B) 0/0 100 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00029 42712 44199 tolC 0/0 100 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00037 42508 44151 yojI 0/0 100 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 11072 11932 (AGly)aac3-IId 0/0 100 99.8 EU022314:1-861 (AGly)aac3-IId NA
contig00066 923 1702 (AGly)aadA2 0/0 100 99.9 X68227:66-945 (AGly)aadA2 NA
contig00011 73468 74772 (Bla)AmpC1_Ecoli 0/0 100 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00016 65396 66529 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00019 55572 56729 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00015 65022 65897 (Bla)blaCTX-M-55 0/0 100 100.0 HM748991:321-1196 (Bla)blaCTX-M-55 NA
contig00049 5240 6100 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60155 62056 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00066 8357 9262 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00068 1422 2081 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00066 2207 3046 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00077 800 2005 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00066 6 503 (Tmt)dfrA12 0/0 100 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 11072 11932 aac(3)-IId 0/0 100 99.9 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00066 911 1702 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00015 65022 65897 blaCTX-M-55 0/0 100 100.0 NG_049006.1 class A extended-spectrum beta-lactamase CTX-M-55 CEPHALOSPORIN
contig00016 65396 66529 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00049 5240 6100 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00068 1422 2081 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00066 6 503 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00066 8341 9262 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00066 2207 3046 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00077 800 2005 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00049 11072 11932 AAC3 0/0 100.0 99.9 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00028 39628 40821 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00028 40844 43993 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00011 38956 42069 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00035 3717 4874 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00035 601 3705 ACRF 0/0 100.0 100.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00035 5273 5935 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00019 55572 56729 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00066 901 1702 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00021 33306 35158 ASMA 0/0 100.0 97.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00029 66576 67397 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00021 57758 58480 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00021 56358 57761 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00014 88265 89455 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00016 65396 66529 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00068 1417 2081 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00012 60842 61540 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61537 62910 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 15924 16556 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00049 14853 15795 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00066 6 503 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00002 58458 59630 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 59647 61185 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00010 87250 88440 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00009 121400 122563 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 57801 58331 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00009 119862 121400 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00016 99937 101580 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00009 123597 127190 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00039 2609 3337 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00039 1418 2242 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00030 62969 63382 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8068 8745 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 230724 231113 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 231127 231561 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00041 30146 31378 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00021 47498 48745 MDTA 0/0 100.0 99.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00021 48745 51867 MDTB 0/0 100.0 97.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00021 51868 54945 MDTC 0/0 100.0 98.4 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00039 6838 7995 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00039 3700 6813 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00018 16915 18141 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00018 26770 27978 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 198002 198331 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 197650 198015 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 126248 127621 MDTK 0/0 100.0 99.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00031 21875 22906 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00031 22906 24957 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00031 24954 26420 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00066 8341 9262 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00011 17794 18270 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 51432 53180 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 60155 62056 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00011 73468 74772 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00009 17667 18635 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 58511 59380 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00031 48037 48360 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00066 2206 3173 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00077 800 2005 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00077 2799 3215 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00037 42508 44151 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID228
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00075 1696 2556 aac(3)-IIa_1 0/0 100.0 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00087 1539 2138 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00055 1303 2091 aadA5_1 0/0 100.0 100.0 AF137361 aadA5 Streptomycin
contig00072 970 1773 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00072 134 970 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00076 1615 2490 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00087 578 1408 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00041 14379 15239 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00055 699 1172 dfrA17_1 0/0 100.0 100.0 FJ460238 dfrA17 Trimethoprim
contig00002 64083 65315 mdf(A)_1 0/0 100.0 97.8 Y08743 mdf(A)
contig00104 68 989 mph(A)_2 1/1 100.0 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00055 2611 3477 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00072 1834 2649 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00050 5808 7054 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00075 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00087 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00055 1303 2091 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00003 66086 69235 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 127067 130180 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 149301 150458 acrE 0/0 100.0 98.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 150470 153574 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 148240 148902 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00072 970 1773 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00072 134 970 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00007 52237 53056 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00001 566512 567233 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00001 567230 568633 baeS 0/0 100.0 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00016 66690 68057 cpxA 0/0 99.6 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00076 1615 2490 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00055 699 1172 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00022 60267 61439 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00022 61456 62994 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 222895 223950 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00022 59610 60140 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 223950 225488 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00009 146391 148034 eptA 0/0 100.0 91.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00003 64870 66063 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00019 48091 49224 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00003 153985 155142 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00013 28735 29067 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00002 64083 65315 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 221757 222371 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 218159 221752 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 188688 189416 gadW 0/0 100.0 100.0 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 189785 190609 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00027 39527 39940 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00002 219436 220108 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 289457 289840 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00001 576246 577493 mdtA 0/0 100.0 95.6 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00001 573124 576246 mdtB 0/0 100.0 96.2 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00001 570046 573123 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 184030 185187 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 185212 188325 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00011 91826 93052 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00011 81989 83197 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00021 38782 40014 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00009 116127 117158 mdtN 0/0 100.0 96.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00009 114076 116127 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00009 112613 114079 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00104 68 973 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00015 45415 47163 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00087 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 332507 333475 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00055 2638 3477 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00072 1834 2649 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00041 14379 15239 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00050 5808 7054 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00007 78739 80226 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00001 630589 631755 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 391680 393323 yojI 0/0 100.0 97.4 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00075 1696 2556 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00055 1303 2091 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00072 970 1773 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00072 134 970 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00019 48091 49224 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 153985 155142 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00076 1615 2490 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00087 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00041 14379 15239 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00002 278654 280555 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00104 68 973 (MLS)mph(A) 0/0 100 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00055 2638 3477 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00072 1834 2649 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00050 5780 7054 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00050 7085 7735 (Tet)tetR 0/0 100 99.8 HF545434:53576-54226 (Tet)tetR NA
contig00055 699 1172 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00075 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00087 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00055 1303 2091 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00072 970 1797 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00072 134 970 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00076 1615 2490 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00019 48091 49224 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00087 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00041 14379 15239 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00055 699 1172 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00104 68 989 mph(A) 1/1 100 99.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00055 2638 3477 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00072 1834 2649 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00050 5780 6979 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00075 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00003 64870 66063 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 66086 69235 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 127067 130180 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 149301 150458 ACRE 0/0 100.0 98.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 150470 153574 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 148240 148902 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00003 153985 155142 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00055 1303 2091 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00072 970 1797 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00072 134 970 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00001 589153 591005 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00007 52237 53056 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00001 566512 567233 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00001 567230 568633 BAES 0/0 100.0 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 416956 418146 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00019 48091 49224 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00016 65995 66693 CPXAR 0/0 100.0 98.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 66690 68057 CPXAR 0/0 99.6 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00055 699 1172 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00022 60267 61439 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00022 61456 62994 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00005 194231 195421 EMRD 0/0 100.0 97.5 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 222787 223950 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00022 59610 60140 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 223950 225488 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00009 146391 148034 EPTA 0/0 100.0 91.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 218159 221752 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 188688 189416 GADW 0/0 100.0 100.0 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 189785 190609 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00027 39527 39940 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00002 219436 220108 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 289457 289846 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 289861 290295 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00002 64083 65315 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00001 576246 577493 MDTA 0/0 100.0 95.6 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00001 573124 576246 MDTB 0/0 100.0 96.2 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00001 570046 573123 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 184030 185187 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 185212 188325 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00011 91826 93052 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00011 81989 83197 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 258563 258892 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 258211 258576 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 191249 192621 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00021 38782 40014 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00009 116127 117158 MDTN 0/0 100.0 96.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00009 114076 116127 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00009 112613 114079 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00104 68 989 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00015 45415 47163 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 28735 29067 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00087 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00002 278654 280555 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 332507 333475 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00006 19703 20572 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00009 84260 84582 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00055 2637 3604 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00072 1834 2649 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00041 14361 15606 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00050 5780 7054 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00001 630589 631755 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 391680 393323 YOGI 0/0 100.0 97.4 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID229
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00022 30102 31334 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00003 226094 226750 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00005 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00005 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00003 277506 278228 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00003 278225 279628 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 22569 23942 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00008 15936 16568 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00003 231391 232266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00002 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00021 18418 20061 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00011 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00023 50255 51388 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00011 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00010 136225 136557 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00022 30102 31334 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00008 191054 191782 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00008 192150 192974 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00001 252998 253411 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00012 8235 8907 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00004 244960 245343 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00003 287241 288488 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00003 284119 287241 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00003 281041 284118 mdtC 0/0 100.0 98.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00008 186396 187553 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00008 187578 190691 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 462445 463671 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 452606 453814 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00018 4259 5290 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00018 5290 7341 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00018 7338 8804 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00006 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00001 598759 600507 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 76806 77774 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00003 226094 226750 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00005 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 344414 345580 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00003 124793 126436 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00006 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00023 50255 51388 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00011 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00003 231391 232266 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00012 60696 62597 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00003 226094 226750 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00023 50255 51388 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00003 226094 226750 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00005 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00005 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00005 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00011 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00003 300095 301947 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00003 277506 278228 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 278225 279628 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 151708 152898 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00023 50255 51388 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 21874 22572 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 22569 23942 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00008 15936 16568 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00002 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00015 27130 28320 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00021 18418 20061 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00008 191054 191782 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00008 192150 192974 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00001 252998 253411 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00012 8235 8907 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00004 244960 245349 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00004 245363 245797 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00022 30102 31334 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00003 287241 288488 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00003 284119 287241 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00003 281041 284118 MDTC 0/0 100.0 98.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00008 186396 187553 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00008 187578 190691 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 462445 463671 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 452606 453814 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00004 205985 206314 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00004 205633 205998 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00018 4259 5290 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00018 5290 7341 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00018 7338 8804 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00006 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00001 598759 600507 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00010 136225 136557 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00012 60696 62597 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 76806 77774 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 226094 226750 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00013 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00018 30421 30743 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00003 344414 345580 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00003 124793 126436 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID231
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 1406 2209 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00050 570 1406 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00052 1142 2017 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00046 3175 4035 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00063 182 664 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00022 64607 65839 mdf(A)_1 0/0 100.0 99.1 Y08743 mdf(A)
contig00046 8137 9058 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00045 1419 2075 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00050 2270 3085 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00054 2413 3659 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00009 124682 127831 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 270324 271481 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 271493 274597 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 269263 269925 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00050 1406 2209 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00050 570 1406 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00003 60020 60839 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00007 115445 116167 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00007 114045 115448 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00031 22853 24226 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00005 15129 15761 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00052 1142 2017 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00063 182 664 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00017 43762 44934 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00017 42207 43745 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00010 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00017 45061 45591 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00010 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00029 18403 20046 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00009 127854 129047 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00018 92234 93367 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00010 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00009 36338 37495 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00033 3430 3762 Escherichia_coli_emrE 0/0 100.0 92.5 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00022 64607 65839 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00010 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00010 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00005 190175 190903 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00005 191271 192095 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00014 69274 69687 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8277 8949 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00026 52665 53048 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00007 105185 106432 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00007 106432 109554 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00007 109555 112632 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00005 185517 186674 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00005 186699 189812 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00002 198961 200187 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00002 208818 210026 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00016 82731 83963 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00019 4259 5290 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00019 5290 7341 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00019 7338 8804 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00046 8153 9058 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00010 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00002 62125 63873 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00004 124374 125342 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00045 1419 2075 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00050 2270 3085 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00046 3175 4035 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00054 2413 3659 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00003 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00004 75712 77355 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 1406 2209 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00050 570 1406 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00010 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00018 92234 93367 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00009 36338 37495 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00052 1142 2017 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00046 3175 4035 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00013 60738 62639 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00045 1419 2075 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00046 8153 9058 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00050 2270 3085 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00054 2385 3659 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00063 182 655 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00050 1406 2233 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00050 570 1406 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00052 1142 2017 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00018 92234 93367 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00046 3175 4035 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00063 182 655 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00046 8137 9058 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00045 1419 2075 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig00050 2270 3085 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00054 2385 3584 tet(A) 0/0 100 100.0 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00009 127854 129047 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00009 124682 127831 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00010 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 270324 271481 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 271493 274597 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 269263 269925 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00009 36338 37495 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00050 1406 2233 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00050 570 1406 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00007 90930 92782 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 60020 60839 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00007 115445 116167 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00007 114045 115448 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 49251 50441 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00018 92234 93367 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00031 22158 22856 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00031 22853 24226 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00005 15129 15761 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00063 182 655 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00017 43762 44934 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00017 42207 43745 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 92098 93288 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00010 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00017 45061 45591 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00010 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00029 18403 20046 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00010 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00005 190175 190903 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00005 191271 192095 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00014 69274 69687 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8277 8949 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00026 52659 53048 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00026 52211 52645 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00022 64607 65839 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00007 105185 106432 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00007 106432 109554 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00007 109555 112632 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00005 185517 186674 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00005 186699 189812 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00002 198961 200187 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00002 208818 210026 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00027 35375 35704 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00027 35023 35388 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00008 134590 135963 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00016 82731 83963 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00019 4259 5290 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00019 5290 7341 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00019 7338 8804 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00046 8137 9058 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00010 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00002 62125 63873 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00033 3430 3762 MVRC 0/0 100.0 92.5 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00013 60738 62639 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00010 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00004 124374 125342 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00045 1419 2075 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00016 11978 12847 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00019 30421 30744 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00050 2270 3085 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00046 3157 4402 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00054 2385 3659 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00004 75712 77355 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID233
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00493 1696 2556 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00886 46 645 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00207 5544 6389 aadA16_1 0/0 100 99.6 EU675686 aadA16 Streptomycin
contig00166 5268 6143 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00676 579 1409 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00166 1586 2446 blaTEM-1C_1 0/0 100 100.0 FJ560503 blaTEM-1C Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00692 89 730 catA2_1 0/0 100 96.1 X53796 catA2 Chloramphenicol
contig00207 6570 7043 dfrA27_1 0/0 100 100.0 FJ459817 dfrA27 Trimethoprim
contig00388 3337 3756 fosA_6 0/0 100 94.0 ACZD01000244 fosA Fosfomycin
contig00085 5909 7084 oqxA_1 0/0 100 96.0 EU370913 oqxA Nalidixic_acid, Ciprofloxacin
contig00085 2733 5885 oqxB_1 0/0 100 97.7 EU370913 oqxB Nalidixic_acid, Ciprofloxacin
contig00207 192 836 qnrB6_2 0/0 100 100.0 EF523819 qnrB6 Ciprofloxacin
contig00207 4247 5113 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00370 2608 3423 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00493 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00886 46 645 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00207 5544 6389 aadA16 0/0 100.0 99.6 EU675686:3196-4042 aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae aminoglycoside
contig00207 7176 7628 arr-3 0/0 100.0 100.0 EU675686:1956-2409 arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis rifamycin
contig00692 89 730 catII_from_Escherichia_coli_K-12 0/0 100.0 96.1 X53796.1:186-828 catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. phenicol
contig00166 5268 6143 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00207 6570 7043 dfrA27 0/0 100.0 100.0 KP076293.1:2347-2821 A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae diaminopyrimidine
contig00388 3337 3756 FosA5 0/0 100.0 93.3 KP143090.1:1619-1199 fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin fosfomycin
contig00131 3106 4299 Klebsiella_pneumoniae_acrA 2/3 99.8 94.9 AJ318073.1:793-1990 AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00352 1186 1548 Klebsiella_pneumoniae_KpnE 0/0 100.0 91.7 AP006725.1:2483889-2484252 KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00352 870 1199 Klebsiella_pneumoniae_KpnF 0/0 100.0 94.8 AP006725.1:2484238-2484568 KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00341 1038 2162 Klebsiella_pneumoniae_OmpK37 0/0 100.0 95.6 AJ011502.1:300-1425 Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00085 5909 7084 oqxA 0/0 100.0 96.0 EU370913.1:46651-47827 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00085 2733 5885 oqxB 0/0 100.0 97.7 EU370913.1:47850-51003 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00676 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00207 156 836 QnrB17 0/0 100.0 99.8 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00207 4247 5086 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00370 2608 3423 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00166 1586 2446 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00493 1696 2556 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00207 5544 6389 (AGly)aadA16 0/0 100 99.6 EU675686:3197-4042 (AGly)aadA16 NA
contig00123 5478 6638 (Bla)ampH 0/0 100 97.8 CP003785:4208384-4209544 (Bla)ampH NA
contig00166 5268 6143 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00676 579 1409 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00166 1586 2446 (Bla)blaTEM-135 0/0 100 99.9 JQ060998:1-861 (Bla)blaTEM-135 NA
contig00388 3337 3756 (Fcyn)FosA5 0/0 100 93.3 KP143090:1200-1619 (Fcyn)FosA5 NA
contig00085 5909 7084 (Flq)OqxA 0/0 100 96.0 EU370913:46652-47827 (Flq)OqxA NA
contig00085 2733 5885 (Flq)OqxBgb 0/0 100 97.7 EU370913:47851-51003 (Flq)OqxBgb NA
contig00207 156 836 (Flq)qnrB17 0/0 100 99.8 AM919398:1-681 (Flq)qnrB17 NA
contig00692 89 730 (Phe)catA2 0/0 100 96.1 X53796:187-903 (Phe)catA2 NA
contig00207 7176 7628 (Rif)arr3 0/0 100 100.0 JF806499:1353-1805 (Rif)arr3 NA
contig00207 4247 5086 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00370 2608 3423 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00207 6570 7043 (Tmt)dfrA27 0/0 100 100.0 EU675686:2543-3016 (Tmt)dfrA27 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00493 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00886 91 645 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00207 5544 6389 aadA16 0/0 100 100.0 NG_047339.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 STREPTOMYCIN
contig00207 7176 7628 arr-3 0/0 100 100.0 NG_048581.1 NAD(+)–rifampin ADP-ribosyltransferase Arr-3 RIFAMYCIN
contig00166 5268 6143 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00676 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00166 1586 2446 blaTEM-235 0/0 100 99.9 NG_059898.1 class A beta-lactamase TEM-235 BETA-LACTAM
contig00692 89 730 catA2 0/0 100 100.0 NG_047596.1 type A-2 chloramphenicol O-acetyltransferase CatII CHLORAMPHENICOL
contig00207 6570 7043 dfrA27 0/0 100 100.0 NG_047723.1 trimethoprim-resistant dihydrofolate reductase DfrA27 TRIMETHOPRIM
contig00388 3337 3756 fosA_gen 0/0 100 94.0 NG_047881.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
contig00085 5909 7084 oqxA6 0/0 100 96.3 NG_050424.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 PHENICOL, QUINOLONE
contig00085 2733 5885 oqxB9 0/0 100 99.2 NG_050458.1 multidrug efflux RND transporter permease subunit OqxB9 PHENICOL, QUINOLONE
contig00207 192 836 qnrB6 0/0 100 99.8 NG_050523.1 quinolone resistance pentapeptide repeat protein QnrB6 QUINOLONE
contig00207 4247 5086 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00370 2608 3423 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00493 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00131 3106 4299 ACRA 2/3 99.8 94.9 MEG_400 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00123 5478 6638 AMPH 0/0 100.0 97.8 MEG_730 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00207 5544 6389 ANT3-DPRIME 0/0 100.0 100.0 MEG_763 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00692 89 730 CATA 0/0 100.0 100.0 MEG_1568 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00114 6861 7559 CPXAR 0/0 100.0 97.3 MEG_2116 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00114 7556 8929 CPXAR 0/0 100.0 95.8 MEG_2115 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00001 36024 36966 CTX 0/0 100.0 96.5 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00207 6570 7043 DFRA 0/0 100.0 100.0 MEG_2554 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00388 3337 3756 FOSA 0/0 100.0 94.0 MEG_2991 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00110 10041 11272 KDEA 0/0 99.9 94.1 MEG_3447 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KDEA NA
contig00352 1186 1548 KPNE 0/0 100.0 91.7 MEG_3514 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNE NA
contig00352 870 1199 KPNF 0/0 100.0 94.8 MEG_3515 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNF NA
contig00064 14893 15993 KPNO 2/9 99.7 94.4 MEG_3516 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNO NA
contig00341 1038 2162 OMP37 0/0 100.0 95.6 MEG_4283 Drugs:betalactams:Mutant_porin_proteins:OMP37 NA
contig00085 5909 7084 OQXA 0/0 100.0 96.3 MEG_4330 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXA NA
contig00085 2733 5885 OQXB 0/0 100.0 99.2 MEG_4359 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00676 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00207 156 836 QNRB 0/0 100.0 100.0 MEG_5999 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00207 4247 5173 SULI 0/0 100.0 100.0 MEG_6616 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00370 2608 3423 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00166 1568 2813 TEM 0/0 98.3 99.6 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
ID235
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1694 2554 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00080 1540 2139 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00057 1443 2231 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00063 5421 6200 aph(3’’)-Ib_5 0/0 97 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00063 4585 5421 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00016 106674 107549 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00080 579 1409 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00009 49 909 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00070 223 882 catA1_1 0/0 100 99.8 V00622 catA1 Chloramphenicol
contig00057 839 1312 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00003 66891 68123 mdf(A)_1 0/0 100 98.3 Y08743 mdf(A)
contig00091 67 988 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00057 2751 3617 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00063 85 900 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00073 1131 2336 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1694 2554 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00080 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00057 1443 2231 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00008 118225 121374 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00001 339532 342645 acrD 0/0 100.0 98.7 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00014 8762 9919 acrE 0/0 100.0 98.2 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 5646 8750 acrF 0/0 100.0 97.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00014 10318 10980 acrS 0/0 100.0 97.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00063 5421 6200 APH(3’’)-Ib 0/0 97.0 99.7 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00063 4585 5421 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00005 133326 134145 bacA 0/0 99.8 97.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00015 62555 63276 baeR 0/0 99.9 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00015 63273 64676 baeS 0/0 100.0 96.4 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00070 223 882 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00019 22665 24038 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00016 15337 15969 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00016 106674 107549 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 839 1312 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00004 54759 55931 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00004 55948 57486 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00001 241675 242730 emrK 0/0 100.0 96.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00004 54102 54632 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00001 240137 241675 emrY 0/0 100.0 98.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00018 75299 76942 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00008 121397 122590 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 135097 136230 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 304999 306303 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00008 30819 31976 Escherichia_coli_ampH 0/0 100.0 97.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00003 66891 68123 Escherichia_coli_mdfA 0/0 100.0 96.8 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00001 243253 243867 evgA 0/0 100.0 99.3 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00001 243872 247465 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00009 90677 91405 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00009 91774 92598 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00028 53964 54377 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00003 245400 246077 kdpE 0/0 100.0 95.6 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00031 27849 28232 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00015 72289 73536 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00015 69167 72289 mdtB 0/0 100.0 96.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00015 66089 69166 mdtC 0/0 100.0 97.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00009 86019 87176 mdtE 0/0 100.0 99.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00009 87201 90314 mdtF 0/0 100.0 98.4 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00012 152112 153338 mdtG 0/0 100.0 98.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00012 142273 143481 mdtH 0/0 100.0 98.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00027 37107 38318 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00018 45087 46118 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00018 43036 45087 mdtO 0/0 100.0 96.6 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00018 41573 43039 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00091 67 972 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00001 363352 363826 mphB 0/0 99.6 96.2 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00011 51557 53305 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00080 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00001 137295 138263 pmrF 0/0 100.0 97.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 2778 3617 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00063 85 900 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00009 49 909 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00073 1131 2336 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00005 111523 113010 tolC 0/0 100.0 97.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00037 22468 23634 ugd 0/0 100.0 96.4 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00001 75474 77117 yojI 0/0 100.0 97.8 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1694 2554 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00057 1443 2231 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00063 5421 6200 (AGly)strA 0/0 97 99.9 AB366441:22458-23261 (AGly)strA NA
contig00063 4585 5421 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00001 304999 306303 (Bla)AmpC1_Ecoli 0/0 100 95.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00006 135097 136230 (Bla)AmpC2_Ecoli 0/0 100 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00008 30819 31976 (Bla)ampH_Ecoli 0/0 100 97.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00016 106674 107549 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00080 579 1409 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00009 49 909 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00003 299933 301834 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00091 67 972 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00070 223 882 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00057 2778 3617 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00063 85 900 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00073 1131 2336 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00057 839 1312 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1694 2554 aac(3)-IIe 0/0 100.0 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00080 1540 2094 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00057 1443 2231 aadA5 0/0 100.0 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00063 5421 6200 aph(3’’)-Ib 0/0 94.2 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00063 4585 5421 aph(6)-Id 0/0 100.0 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00016 106674 107549 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00006 135097 136230 blaEC-19 0/0 100.0 99.9 NG_049084.1 class C extended-spectrum beta-lactamase EC-19 CEPHALOSPORIN
contig00080 579 1409 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00009 49 909 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00070 223 882 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00057 839 1312 dfrA17 0/0 100.0 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00091 67 988 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00057 2778 3617 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00063 85 900 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00073 1131 2336 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00078 1694 2554 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00008 121397 122590 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00008 118225 121374 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00001 339532 342645 ACRD 0/0 100.0 98.7 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00014 8762 9919 ACRE 0/0 100.0 98.2 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00014 5646 8750 ACRF 0/0 100.0 97.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00014 10318 10980 ACRS 0/0 100.0 97.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00008 30819 31976 AMPH 0/0 100.0 97.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00057 1443 2231 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00063 5421 6200 APH3-DPRIME 0/0 94.2 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00063 4585 5421 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00015 85471 87323 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00005 133326 134145 BACA 0/0 99.8 97.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00015 62555 63276 BAER 0/0 99.9 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00015 63273 64676 BAES 0/0 100.0 96.4 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00001 49011 50201 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00006 135097 136230 BLAEC 0/0 100.0 99.9 MEG_1277 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00070 212 882 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00019 21970 22668 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00019 22665 24038 CPXAR 0/0 100.0 99.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00016 15337 15969 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00057 839 1312 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00004 54759 55931 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00004 55948 57486 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00023 43036 44226 EMRD 0/0 100.0 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00001 241675 242838 EMRK 0/0 100.0 96.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00004 54102 54632 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00001 240137 241675 EMRY 0/0 100.0 98.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00018 75299 76942 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00001 243872 247465 EVGS 0/0 100.0 97.1 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00009 90677 91405 GADW 0/0 100.0 97.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00009 91774 92598 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00028 53964 54377 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00003 245400 246077 KDPE 0/0 100.0 95.6 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00031 27843 28232 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00031 27394 27828 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00003 66891 68123 MDFA 0/0 100.0 98.4 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00015 72289 73536 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00015 69167 72289 MDTB 0/0 100.0 96.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00015 66089 69166 MDTC 0/0 100.0 97.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00009 86019 87176 MDTE 0/0 100.0 99.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00009 87201 90314 MDTF 0/0 100.0 98.4 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00012 152112 153338 MDTG 0/0 100.0 98.7 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00012 142273 143481 MDTH 0/0 100.0 98.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00002 326169 326498 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00002 325817 326182 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00002 258816 260188 MDTK 0/0 99.9 97.9 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00027 37107 38318 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00018 45087 46118 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00018 43036 45087 MDTO 0/0 100.0 96.6 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00018 41573 43039 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00091 67 988 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00001 363352 363826 MPHB 0/0 99.6 96.2 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00011 51557 53305 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00080 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00003 299933 301834 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00001 304999 306303 PBP4B 0/0 100.0 95.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00001 137295 138263 PMRF 0/0 100.0 97.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00029 21728 22597 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00018 21050 21372 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00057 2777 3744 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00063 85 900 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00073 1131 2336 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00037 22468 23634 UGD 0/0 100.0 96.4 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00001 75474 77117 YOGI 0/0 100.0 97.8 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID237
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00022 30105 31337 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A)
contig00003 226094 226750 qnrS1_1 0/0 100 100.0 AB187515 qnrS1 Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 125377 128526 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00005 117709 120822 acrD 0/0 100.0 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00004 270325 271482 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 271494 274598 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00004 269264 269926 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00004 60021 60840 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00003 277506 278228 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00003 278225 279628 baeS 0/0 100.0 98.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00027 22827 24200 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15000 15632 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00003 231391 232266 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00002 27204 28376 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00002 28393 29931 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00005 25955 27010 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00002 26547 27077 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00005 24417 25955 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00014 115182 116825 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00012 128549 129742 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00024 50255 51388 Escherichia_coli_ampC 0/0 100.0 97.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00005 85287 86591 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00012 37033 38190 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00008 136225 136557 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00022 30105 31337 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00005 27534 28148 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00005 28153 31746 evgS 0/0 100.0 99.5 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00007 190118 190846 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00007 191214 192038 gadX 0/0 100.0 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00001 226067 226480 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00009 8327 8999 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00015 55320 55703 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00003 287241 288488 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00003 284119 287241 mdtB 0/0 100.0 98.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00003 281041 284118 mdtC 0/0 100.0 98.1 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00007 185460 186617 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00007 186642 189755 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00001 435515 436741 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00001 425676 426884 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00014 91422 92453 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00014 89371 91422 mdtO 0/0 100.0 98.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00014 87908 89374 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00005 142312 142788 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00010 51631 53379 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00003 76806 77774 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00003 226094 226750 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00004 36175 37662 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00003 344414 345580 ugd 0/0 100.0 95.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00003 124793 126436 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 85287 86591 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00024 50255 51388 (Bla)AmpC2_Ecoli 0/0 100 97.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00012 37033 38190 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00003 231391 232266 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00009 60788 62689 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00003 226094 226750 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 231391 232266 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00024 50255 51388 blaEC-13 0/0 100 99.6 NG_049079.1 class C extended-spectrum beta-lactamase EC-13 CEPHALOSPORIN
contig00003 226094 226750 qnrS1 0/0 100 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00012 128549 129742 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00012 125377 128526 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00005 117709 120822 ACRD 0/0 100.0 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00004 270325 271482 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00004 271494 274598 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00004 269264 269926 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00012 37033 38190 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00003 300095 301947 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00004 60021 60840 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00003 277506 278228 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 278225 279628 BAES 0/0 100.0 98.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00003 151708 152898 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00024 50255 51388 BLAEC 0/0 100.0 99.6 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00027 22132 22830 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00027 22827 24200 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15000 15632 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00002 27204 28376 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00002 28393 29931 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00017 27098 28288 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00005 25955 27118 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00002 26547 27077 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00005 24417 25955 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00014 115182 116825 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00005 28153 31746 EVGS 0/0 100.0 99.5 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00007 190118 190846 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00007 191214 192038 GADX 0/0 100.0 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00001 226067 226480 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00009 8327 8999 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00015 55314 55703 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00015 54866 55300 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00022 30105 31337 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00003 287241 288488 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00003 284119 287241 MDTB 0/0 100.0 98.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00003 281041 284118 MDTC 0/0 100.0 98.1 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00007 185460 186617 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00007 186642 189755 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00001 435515 436741 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00001 425676 426884 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00015 94349 94678 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00015 94665 95030 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00011 134591 135964 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00014 91422 92453 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00014 89371 91422 MDTO 0/0 100.0 98.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00014 87908 89374 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00005 142312 142788 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00010 51631 53379 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00008 136225 136557 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00009 60788 62689 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00005 85287 86591 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00003 76806 77774 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 226094 226750 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig00019 11905 12774 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00014 65969 66291 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00003 344414 345580 UGD 0/0 100.0 95.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00003 124793 126436 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID256
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 3157 3945 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00066 843 1646 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00066 7 843 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00019 80141 81016 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00081 534 1394 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00057 4076 4549 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00001 64075 65307 mdf(A)_1 0/0 100 97.8 Y08743 mdf(A)
contig00087 69 990 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00057 1771 2637 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00066 1707 2522 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 3157 3945 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00001 445341 448490 acrB 0/0 100.0 98.8 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00006 118145 121258 acrD 0/0 100.0 98.6 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00003 345872 347029 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 347041 350145 acrF 0/0 100.0 96.6 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00003 344811 345473 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00066 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00066 7 843 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00003 143341 144160 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00002 83650 84371 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00002 82250 83653 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00009 99254 100627 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00030 15089 15721 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00019 80141 81016 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00057 4076 4549 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00028 47795 48967 emrA 0/0 100.0 98.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00028 48984 50522 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00006 24375 25430 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00028 47138 47668 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00006 22837 24375 emrY 0/0 100.0 97.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00008 79457 81100 eptA 0/0 100.0 91.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00001 444125 445318 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00008 136942 138075 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00001 533227 534384 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00005 24245 24577 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00026 16441 16773 Escherichia_coli_emrE 0/0 100.0 98.8 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00001 64075 65307 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00006 25954 26568 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00006 26573 30166 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00004 130808 131536 gadW 0/0 100.0 99.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00004 131905 132729 gadX 0/0 100.0 93.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 129422 129835 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00001 219428 220100 kdpE 0/0 99.3 95.5 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00018 28549 28932 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00002 73390 74637 mdtA 0/0 100.0 95.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00002 74637 77759 mdtB 0/0 100.0 96.1 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00002 77760 80837 mdtC 0/0 100.0 94.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00004 126150 127307 mdtE 0/0 100.0 98.3 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00004 127332 130445 mdtF 0/0 100.0 97.1 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00017 93527 94753 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00017 83689 84897 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00046 261 1472 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00008 49203 50234 mdtN 0/0 100.0 96.3 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00008 47152 49203 mdtO 0/0 100.0 97.2 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00008 45689 47155 mdtP 0/0 100.0 98.1 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00087 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00010 48842 50590 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00002 283849 284817 pmrF 0/0 100.0 97.6 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00057 1771 2610 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00066 1707 2522 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00081 534 1394 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00003 116171 117658 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00002 18552 19718 ugd 0/0 100.0 99.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00002 223977 225620 yojI 0/0 100.0 97.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 3157 3945 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00066 843 1646 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00066 7 843 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00008 136942 138075 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00001 533227 534384 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00019 80141 81016 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00081 534 1394 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00001 278645 280546 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00087 69 974 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00057 1771 2610 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00066 1707 2522 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00057 4076 4549 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00057 3157 3945 aadA5 0/0 100 100.0 NG_047357.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
contig00066 843 1670 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00066 7 843 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00019 80141 81016 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00008 136942 138075 blaEC-5 0/0 100 99.5 NG_049085.1 cephalosporin-hydrolyzing class C beta-lactamase EC-5 CEPHALOSPORIN
contig00081 534 1394 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00057 4076 4549 dfrA17 0/0 100 99.8 NG_047710.1 trimethoprim-resistant dihydrofolate reductase DfrA17 TRIMETHOPRIM
contig00087 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00057 1771 2610 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00066 1707 2522 sul2 0/0 100 99.9 NG_048118.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 444125 445318 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00001 445341 448490 ACRB 0/0 100.0 98.8 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00006 118145 121258 ACRD 0/0 100.0 98.6 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00003 345872 347029 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00003 347041 350145 ACRF 0/0 100.0 96.6 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00003 344811 345473 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00001 533227 534384 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00057 3157 3945 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00066 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00066 7 843 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00002 59211 61063 ASMA 0/0 100.0 97.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00003 143341 144160 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00002 83650 84371 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00002 82250 83653 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00002 199154 200344 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00008 136942 138075 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00009 98559 99257 CPXAR 0/0 100.0 97.8 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00009 99254 100627 CPXAR 0/0 100.0 98.9 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00030 15089 15721 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00057 4076 4549 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00028 47795 48967 EMRA 0/0 100.0 98.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00028 48984 50522 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00016 21518 22708 EMRD 0/0 100.0 97.6 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00006 24375 25538 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00028 47138 47668 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00006 22837 24375 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00008 79457 81100 EPTA 0/0 100.0 91.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00006 26573 30166 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00004 130808 131536 GADW 0/0 100.0 99.9 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00004 131905 132729 GADX 0/0 100.0 93.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 129422 129835 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00001 219428 220100 KDPE 0/0 99.3 95.5 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00018 28543 28932 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00018 28094 28528 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00001 64075 65307 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00002 73390 74637 MDTA 0/0 100.0 95.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00002 74637 77759 MDTB 0/0 100.0 96.1 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00002 77760 80837 MDTC 0/0 100.0 94.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00004 126150 127307 MDTE 0/0 100.0 98.3 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00004 127332 130445 MDTF 0/0 100.0 97.1 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00017 93527 94753 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00017 83689 84897 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00018 59497 59826 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00018 59813 60178 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00005 282364 283736 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00046 261 1472 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00008 49203 50234 MDTN 0/0 100.0 96.3 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00008 47152 49203 MDTO 0/0 100.0 97.2 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00008 45689 47155 MDTP 0/0 100.0 98.1 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00087 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00010 48842 50590 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00005 24245 24577 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00026 16441 16773 MVRC 0/0 100.0 98.8 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00001 278645 280546 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 283849 284817 PMRF 0/0 100.0 97.6 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00014 47049 47918 ROBA 0/0 100.0 99.7 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00008 17336 17658 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00057 1644 2611 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00066 1707 2522 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00081 516 1761 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00002 18552 19718 UGD 0/0 100.0 99.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00002 223977 225620 YOGI 0/0 100.0 97.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID263
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 4779 5639 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00061 8986 9787 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00058 14043 14846 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00058 13207 14043 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00066 2636 3511 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00061 1421 2080 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00061 8091 8588 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00099 42 551 dfrA8_1 0/0 100.0 100.0 U10186 dfrA8 Trimethoprim
contig00004 7373 8605 mdf(A)_1 0/0 100.0 99.9 Y08743 mdf(A)
contig00058 7749 8670 mph(A)_2 1/1 100.0 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00061 10265 11131 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00058 14907 15722 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00082 813 2018 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 4779 5639 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00061 9008 9787 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00005 41369 44518 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 135681 138794 acrD 0/0 100.0 100.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00031 8641 9798 acrE 0/0 100.0 99.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 5525 8629 acrF 0/0 100.0 99.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00031 10197 10859 acrS 0/0 100.0 100.0 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00058 14043 14846 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00058 13207 14043 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00014 115946 116767 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00041 10771 11493 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00041 9371 10774 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00061 1421 2080 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00012 61493 62866 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00007 15377 16009 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00066 2636 3511 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00061 8091 8588 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00099 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00006 58060 59232 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00006 59249 60787 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00009 121400 122455 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 57403 57933 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00009 119862 121400 emrY 0/0 100.0 99.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00042 18804 20447 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 40153 41346 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 65396 66529 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00003 170193 171497 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 129381 130538 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00004 7373 8605 Escherichia_coli_mdfA 0/0 100.0 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00009 122978 123592 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00009 123597 127190 evgS 0/0 100.0 100.0 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00038 2242 2970 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00038 1051 1875 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00026 62969 63382 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00013 8325 9002 kdpE 0/0 100.0 100.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 231027 231410 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00041 511 1758 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00041 1758 4880 mdtB 0/0 100.0 97.0 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00041 4881 7958 mdtC 0/0 100.0 98.0 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00038 6471 7628 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00038 3333 6446 mdtF 0/0 100.0 100.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00017 16615 17841 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00017 26470 27678 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00047 473 1684 mdtM 0/0 98.3 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00034 10883 11914 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00034 11914 13965 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00034 13962 15428 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00058 7749 8654 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00003 114519 114995 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 90321 92069 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00009 17667 18635 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00061 10292 11131 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00058 14907 15722 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00082 813 2018 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00014 92082 93569 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00036 42513 44156 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 4779 5639 (AGly)aac3-IId 0/0 100 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00061 9008 9787 (AGly)aadA2 0/0 100 99.9 X68227:66-945 (AGly)aadA2 NA
contig00058 14043 14846 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00058 13207 14043 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00003 170193 171497 (Bla)AmpC1_Ecoli 0/0 100 99.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00025 65396 66529 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 129381 130538 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00066 2636 3511 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00013 60412 62313 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00058 7749 8654 (MLS)mph(A) 0/0 100 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00061 1421 2080 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00061 10292 11131 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00058 14907 15722 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00082 813 2018 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00061 8091 8588 (Tmt)dfrA12 0/0 100 100.0 Z21672:310-807 (Tmt)dfrA12 NA
contig00099 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 4779 5639 aac(3)-IId 0/0 100 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00061 8996 9787 aadA2 0/0 100 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00058 14043 14870 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00058 13207 14043 aph(6)-Id 0/0 100 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00066 2636 3511 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00025 65396 66529 blaEC-15 0/0 100 98.5 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00061 1421 2080 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00061 8091 8588 dfrA12 0/0 100 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00099 42 551 dfrA8 0/0 100 100.0 NG_047741.1 trimethoprim-resistant dihydrofolate reductase DfrA8 TRIMETHOPRIM
contig00058 7749 8670 mph(A) 1/1 100 99.6 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00061 10292 11131 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00058 14907 15722 sul2 0/0 100 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00082 813 2018 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00074 4779 5639 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 40153 41346 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 41369 44518 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00003 135681 138794 ACRD 0/0 100.0 100.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00031 8641 9798 ACRE 0/0 100.0 99.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00031 5525 8629 ACRF 0/0 100.0 99.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00031 10197 10859 ACRS 0/0 100.0 100.0 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 129381 130538 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00061 8986 9787 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00058 14043 14870 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00058 13207 14043 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00027 52233 54085 ASMA 0/0 100.0 97.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00014 115946 116767 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00041 10771 11493 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00041 9371 10774 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00019 67605 68795 BCR 0/0 100.0 99.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00025 65396 66529 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00061 1416 2080 CATA 0/0 99.1 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00012 60798 61496 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00012 61493 62866 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00007 15377 16009 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00070 3603 4545 CTX 0/0 100.0 98.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00061 8091 8588 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00099 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00006 58060 59232 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00006 59249 60787 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00011 36205 37395 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00009 121400 122563 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00006 57403 57933 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00009 119862 121400 EMRY 0/0 100.0 99.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00042 18804 20447 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00009 123597 127190 EVGS 0/0 100.0 100.0 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00038 2242 2970 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00038 1051 1875 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00026 62969 63382 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00013 8325 9002 KDPE 0/0 100.0 100.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 231027 231416 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 231430 231864 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00004 7373 8605 MDFA 0/0 100.0 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00041 511 1758 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00041 1758 4880 MDTB 0/0 100.0 97.0 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00041 4881 7958 MDTC 0/0 100.0 98.0 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00038 6471 7628 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00038 3333 6446 MDTF 0/0 100.0 100.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00017 16615 17841 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00017 26470 27678 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 198306 198635 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 197954 198319 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 126552 127925 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00047 473 1684 MDTM 0/0 98.3 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00034 10883 11914 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00034 11914 13965 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00034 13962 15428 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00058 7749 8670 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00003 114519 114995 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 90321 92069 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00013 60412 62313 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00003 170193 171497 PBP4B 0/0 100.0 99.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00009 17667 18635 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00037 4214 5083 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00034 37045 37368 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00061 10291 11258 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00058 14907 15722 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00082 813 2018 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00036 42513 44156 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ID282
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01776 68 904 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig00490 119 994 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig01803 123 953 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00261 80 940 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00482 221 880 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig01778 448 921 dfrA1_10 0/0 100.0 99.8 AF203818 dfrA1 Trimethoprim
contig00214 1061 2293 mdf(A)_1 0/0 100.0 97.6 Y08743 mdf(A)
contig00261 5187 6108 mph(A)_2 1/1 100.0 99.5 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00841 1806 2450 qnrB19_1 0/0 100.0 100.0 EU432277 qnrB19 Ciprofloxacin
contig01015 208 864 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig02102 12 827 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00167 601 1847 tet(A)_6 0/0 97.8 99.9 AF534183 tet(A) Doxycycline, Tetracycline
contig00280 1988 3193 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00136 19 1176 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00136 1188 4292 acrF 0/0 100.0 98.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00963 1383 2045 acrS 0/0 100.0 97.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01390 771 1433 acrS 0/0 100.0 99.1 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01776 68 904 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00057 6850 7669 bacA 0/0 99.8 97.6 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00707 1993 2814 bacA 0/0 100.0 99.6 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00482 221 880 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig01049 330 1703 cpxA 0/0 100.0 97.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00128 1060 1692 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00490 119 994 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig01778 448 921 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00817 947 2485 emrB 0/0 100.0 98.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00048 9955 11010 emrK 0/0 100.0 97.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00176 199 1254 emrK 0/0 100.0 99.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01534 47 577 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig01729 37 567 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00048 8417 9955 emrY 0/0 100.0 97.4 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00176 1254 2792 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00227 1151 2284 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig01434 1 1113 Escherichia_coli_ampC 0/0 98.2 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00296 3369 4673 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 99.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00432 2352 3656 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 96.3 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00295 4611 5768 Escherichia_coli_ampH 0/0 100.0 96.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00608 2061 3218 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00544 2032 2364 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00214 1061 2293 Escherichia_coli_mdfA 0/0 100.0 96.0 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00048 11534 12148 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00048 12153 15746 evgS 0/0 100.0 96.6 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig01640 493 1290 gadX 0/0 96.7 96.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig02338 1 749 gadX 0/0 90.8 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00650 417 1092 kdpE 0/0 99.7 95.3 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00611 507 890 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00195 5799 7046 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00858 568 1815 mdtA 0/0 100.0 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00195 2677 5799 mdtB 0/0 100.0 96.7 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00424 2994 4151 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00424 1 2969 mdtF 0/0 95.3 98.1 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00310 765 1991 mdtG 0/0 100.0 97.9 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00231 2584 3792 mdtH 0/0 100.0 98.2 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00153 7640 8671 mdtN 0/0 100.0 97.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00312 1016 2047 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00153 5589 7640 mdtO 0/0 100.0 96.8 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00312 2047 4098 mdtO 0/0 100.0 99.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00153 4126 5592 mdtP 0/0 100.0 96.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00312 4095 5561 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00261 5203 6108 mphA 0/0 100.0 99.8 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00036 11294 11770 mphB 0/0 100.0 97.9 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00413 3033 3509 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01803 123 953 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00039 4694 5662 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00841 1770 2450 QnrB5 0/0 100.0 99.1 DQ303919:0-681 QnrB5 is a plasmid-mediated quinolone resistance protein found in Salmonella enterica fluoroquinolone
contig01015 208 864 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig01317 1043 1405 ramA 0/0 96.8 90.6 JQ727668:0-375 RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig02102 12 827 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00261 80 940 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00167 601 1847 tet(A) 0/0 97.8 99.9 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00280 1988 3193 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00185 5763 7250 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig01582 1 1367 tolC 0/0 91.9 99.8 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00018 12870 14036 ugd 0/0 100.0 99.8 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00257 4319 5962 yojI 0/0 100.0 97.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01776 68 904 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00296 3369 4673 (Bla)AmpC1_Ecoli 0/0 100.0 99.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00432 2352 3656 (Bla)AmpC1_Ecoli 0/0 100.0 96.3 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00227 1151 2284 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig01434 1 1113 (Bla)AmpC2_Ecoli 0/0 98.2 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00295 4611 5768 (Bla)ampH_Ecoli 0/0 100.0 96.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00608 2061 3218 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00490 119 994 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig01803 123 953 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00261 80 940 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00821 1 1826 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 96.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig01015 208 864 (Flq)qnr-S1 0/0 100.0 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00841 1770 2450 (Flq)qnrB5 0/0 100.0 99.1 DQ303919:1-681 (Flq)qnrB5 NA
contig00261 5203 6108 (MLS)mph(A) 0/0 100.0 99.8 DQ445270:1626-2531 (MLS)mph(A) NA
contig00482 221 880 (Phe)catA1 0/0 100.0 99.8 V00622:244-903 (Phe)catA1 NA
contig02102 12 827 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00167 601 1875 (Tet)tetA 0/0 100.0 99.9 JX424423:94438-95712 (Tet)tetA NA
contig00280 1988 3193 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig01778 448 921 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01776 68 904 aph(6)-Id 0/0 100.0 100.0 NG_047466.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00490 119 994 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig01434 1 1113 blaEC-15 0/0 98.2 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00227 1151 2284 blaEC-8 0/0 100.0 98.2 NG_049086.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 CEPHALOSPORIN
contig01803 123 953 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00261 80 940 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00482 221 880 catA1 0/0 100.0 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig01778 448 921 dfrA1 0/0 100.0 99.8 NG_047677.1 trimethoprim-resistant dihydrofolate reductase DfrA1 TRIMETHOPRIM
contig00261 5187 6108 mph(A) 1/1 100.0 99.5 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00841 1806 2450 qnrB19 0/0 100.0 100.0 NG_050479.1 quinolone resistance pentapeptide repeat protein QnrB19 QUINOLONE
contig01015 208 864 qnrS1 0/0 100.0 100.0 NG_050543.1 quinolone resistance pentapeptide repeat protein QnrS1 QUINOLONE
contig02102 12 827 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00167 676 1875 tet(A) 0/0 100.0 99.9 NG_048154.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00280 1988 3193 tet(B) 0/0 100.0 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00136 19 1176 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00136 1188 4292 ACRF 0/0 100.0 98.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00963 1383 2045 ACRS 0/0 100.0 97.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig01390 771 1433 ACRS 0/0 100.0 99.1 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00295 4611 5768 AMPH 0/0 100.0 96.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00608 2061 3218 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig01776 68 904 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00014 1070 2923 ASMA 0/0 100.0 97.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00057 6850 7669 BACA 0/0 99.8 97.6 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00707 1993 2814 BACA 0/0 100.0 99.6 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00243 4090 5280 BCR 0/0 100.0 97.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00227 1151 2284 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig01434 1 1113 BLAEC 0/0 98.2 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00482 210 880 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig01049 330 1703 CPXAR 0/0 100.0 98.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00128 1060 1692 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00503 2122 3062 CTX 0/0 99.8 91.7 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig01778 448 921 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00817 947 2485 EMRB 0/0 100.0 98.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00716 1307 2497 EMRD 0/0 100.0 98.1 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig01494 401 1489 EMRD 0/0 91.4 99.7 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00048 9955 11118 EMRK 0/0 100.0 97.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00176 91 1254 EMRK 0/0 100.0 99.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01534 47 577 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig01729 37 567 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00048 8417 9955 EMRY 0/0 100.0 97.5 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00176 1254 2792 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00048 12153 15746 EVGS 0/0 100.0 98.0 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig01640 493 1290 GADX 0/0 96.7 96.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig02338 1 749 GADX 0/0 90.8 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00650 417 1092 KDPE 0/0 99.7 95.3 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00611 501 890 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00611 53 487 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00214 1061 2293 MDFA 0/0 100.0 97.7 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00195 5799 7046 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00858 568 1815 MDTA 0/0 100.0 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00195 2677 5799 MDTB 0/0 100.0 96.7 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00424 2994 4151 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00424 1 2969 MDTF 0/0 95.3 98.1 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00310 765 1991 MDTG 0/0 100.0 98.1 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00231 2584 3792 MDTH 0/0 100.0 98.2 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig01165 1328 1657 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00645 2792 3157 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00153 7640 8671 MDTN 0/0 100.0 97.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00312 1016 2047 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00153 5589 7640 MDTO 0/0 100.0 96.8 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00312 2047 4098 MDTO 0/0 100.0 99.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00153 4126 5592 MDTP 0/0 100.0 96.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00312 4095 5561 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00261 5187 6108 MPHA 1/1 100.0 99.5 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00036 11294 11770 MPHB 0/0 100.0 97.9 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00413 3033 3509 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00544 2032 2364 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig01803 123 953 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00821 1 1826 PBP2 0/0 96.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00296 3369 4673 PBP4B 0/0 100.0 99.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00432 2352 3656 PBP4B 0/0 100.0 96.3 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00039 4694 5662 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00841 1770 2450 QNRB 0/0 100.0 99.1 MEG_5930 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig01015 208 864 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig01317 1043 1405 RAMA 0/0 96.8 90.6 MEG_6044 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA NA
contig00193 2369 3238 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00685 1730 2052 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00735 1552 1874 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig02102 12 827 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00261 62 1307 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00167 601 1875 TETA 0/0 100.0 99.9 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00280 1988 3193 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00280 3987 4403 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00018 12870 14036 UGD 0/0 100.0 99.8 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00257 4319 5962 YOGI 0/0 100.0 97.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
ORTHO013EI
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00238 1696 2556 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00257 1540 2139 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00020 32083 33228 blaACT-6_1 0/0 100 91.9 FJ237366 blaACT-6
contig00102 2637 3512 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00257 579 1409 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00033 14306 15166 blaTEM-1A_1 0/0 100 100.0 HM749966 blaTEM-1A Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00033 5970 6443 dfrA15_2 0/0 100 100.0 AF221900 dfrA15 Trimethoprim
contig00189 3188 3613 fosA_1 0/0 100 96.0 M85195 fosA Fosfomycin
contig00116 4402 5046 qnrB1_1 0/0 100 100.0 DQ351241 qnrB1 Ciprofloxacin
contig00033 3733 4599 sul1_5 0/0 100 99.8 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00238 1696 2556 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00257 1540 2139 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00020 32083 33228 ACT-6 0/0 100.0 91.9 FJ237366:40-1186 ACT-6 is a beta-lactamase found in Klebsiella pneumoniae carbapenem, cephalosporin, cephamycin, penam
contig00102 2637 3512 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00033 5970 6443 dfrA15 0/0 100.0 100.0 KF534911:39-513 dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00074 14652 15845 Enterobacter_cloacae_acrA 0/0 100.0 94.0 DQ679966:299-1493 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00189 3188 3613 FosA2 0/0 100.0 91.8 EU487198:216-642 An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. fosfomycin
contig00257 579 1409 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00116 4366 5046 QnrB17 0/0 100.0 99.1 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00160 4065 4416 ramA 0/0 93.9 90.9 JQ727668:0-375 RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00033 3733 4572 sul1 0/0 100.0 99.9 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00033 14306 15166 TEM-150 0/0 100.0 99.9 AM183304:208-1069 TEM-150 is a beta-lactamase found in Enterobacter spp. E. coli and Klebsiella pneumoniae. cephalosporin, monobactam, penam, penem
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00238 1696 2556 (AGly)aac3-IIa 0/0 100.0 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00033 5077 5878 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00020 32083 33228 (Bla)blaACT-6 0/0 100.0 91.9 FJ237366:41-1186 (Bla)blaACT-6 NA
contig00102 2637 3512 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00257 579 1409 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00033 14306 15166 (Bla)blaTEM-150 0/0 100.0 99.9 AM183304:209-1069 (Bla)blaTEM-150 NA
contig00189 3188 3613 (Fcyn)FosA2 0/0 100.0 91.8 EU487198:217-642 (Fcyn)FosA2 NA
contig00116 4366 5046 (Flq)qnrB1 0/0 100.0 99.8 DQ351241:1-681 (Flq)qnrB1 NA
contig00033 3733 4572 (Sul)sul1 0/0 100.0 99.9 AF071413:6700-7539 (Sul)sul1 NA
contig00033 5970 6443 (Tmt)dfrA15b 0/0 100.0 99.2 AJ867237:177-650 (Tmt)dfrA15b NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00238 1696 2556 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00257 1540 2094 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00033 5077 5868 aadA1 0/0 100 99.9 NG_052266.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00020 32083 33228 blaACT-63 0/0 100 99.4 NG_061406.1 cephalosporin-hydrolyzing class C beta-lactamase ACT-63 CEPHALOSPORIN
contig00102 2637 3512 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00257 579 1409 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00033 14306 15166 blaTEM-150 0/0 100 99.9 NG_050194.1 class A beta-lactamase TEM-150 BETA-LACTAM
contig00033 5970 6443 dfrA15 0/0 100 100.0 NG_047702.1 trimethoprim-resistant dihydrofolate reductase DfrA15 TRIMETHOPRIM
contig00189 3188 3613 fosA 0/0 100 96.0 NG_050405.1 fosfomycin resistance glutathione transferase FosA FOSFOMYCIN
contig00116 4402 5046 qnrB1 0/0 100 100.0 NG_050469.1 quinolone resistance pentapeptide repeat protein QnrB1 QUINOLONE
contig00033 3733 4572 sul1 0/0 100 99.9 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00238 1696 2556 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00074 14652 15845 ACRB 0/0 100.0 94.0 MEG_402 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00020 32083 33228 ACT 0/0 100.0 99.3 MEG_440 Drugs:betalactams:Class_C_betalactamases:ACT NA
contig00033 5077 5878 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00033 5970 6443 DFRA 0/0 100.0 99.4 MEG_2492 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00189 3032 3613 FOSA 0/0 100.0 92.4 MEG_2990 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00257 579 1409 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00116 4366 5046 QNRB 0/0 100.0 99.1 MEG_5928 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00160 4065 4416 RAMA 0/0 93.9 90.9 MEG_6044 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:RAMA NA
contig00033 3606 4573 SULI 0/0 100.0 99.9 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00033 14288 15533 TEM 0/0 98.3 99.5 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
ORTHO055E
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 1695 2555 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00425 563 1438 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00491 1692 2111 fosA_6 0/0 100 95.0 ACZD01000244 fosA Fosfomycin
contig00015 5873 7048 oqxA_1 0/0 100 99.4 EU370913 oqxA Nalidixic_acid, Ciprofloxacin
contig00015 2697 5849 oqxB_1 0/0 100 95.3 EU370913 oqxB Nalidixic_acid, Ciprofloxacin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 1695 2555 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00425 563 1438 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00491 1692 2111 FosA5 0/0 100.0 94.5 KP143090.1:1619-1199 fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin fosfomycin
contig00029 8174 9367 Klebsiella_pneumoniae_acrA 2/3 99.8 94.8 AJ318073.1:793-1990 AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00278 2116 2445 Klebsiella_pneumoniae_KpnF 0/0 100.0 93.3 AP006725.1:2484238-2484568 KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline
contig00259 3996 5168 Klebsiella_pneumoniae_KpnG 0/0 100.0 94.6 ACWO01000051.1:22092-23265 KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide
contig00015 5873 7048 oqxA 0/0 100.0 99.4 EU370913.1:46651-47827 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
contig00015 2697 5849 oqxB 0/0 100.0 95.3 EU370913.1:47850-51003 RND efflux pump conferring resistance to fluoroquinolone diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 1695 2555 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00149 5314 6474 (Bla)ampH 0/0 100 96.0 CP003785:4208384-4209544 (Bla)ampH NA
contig00425 563 1438 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00491 1692 2111 (Fcyn)FosA5 0/0 100 94.5 KP143090:1200-1619 (Fcyn)FosA5 NA
contig00015 5873 7048 (Flq)OqxA 0/0 100 99.4 EU370913:46652-47827 (Flq)OqxA NA
contig00015 2697 5849 (Flq)OqxBgb 0/0 100 95.3 EU370913:47851-51003 (Flq)OqxBgb NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 1695 2555 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00425 563 1438 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00491 1692 2111 fosA_gen 0/0 100 95.0 NG_047881.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
contig00015 5873 7048 oqxA9 0/0 100 99.8 NG_050427.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA9 PHENICOL, QUINOLONE
contig00015 2697 5849 oqxB11 0/0 100 95.9 NG_050429.1 multidrug efflux RND transporter permease subunit OqxB11 PHENICOL, QUINOLONE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00002 1695 2555 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00029 8174 9367 ACRA 2/3 99.8 94.8 MEG_400 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00149 5314 6474 AMPH 0/0 100.0 96.0 MEG_730 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00114 1710 3533 ASMA 0/0 100.0 93.2 MEG_1179 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00010 18800 19498 CPXAR 0/0 100.0 96.8 MEG_2116 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00010 19495 20868 CPXAR 0/0 100.0 95.6 MEG_2115 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00491 1692 2111 FOSA 0/0 100.0 95.0 MEG_2991 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00005 38583 39814 KDEA 0/0 99.9 94.2 MEG_3447 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KDEA NA
contig00259 3996 5168 KPN 0/0 100.0 94.6 MEG_3512 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:KPN NA
contig00278 2116 2445 KPNF 0/0 100.0 93.3 MEG_3515 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNF NA
contig00062 18258 19361 KPNO 4/18 99.5 94.5 MEG_3516 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:KPNO NA
contig00015 5873 7048 OQXA 0/0 100.0 99.8 MEG_4331 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXA NA
contig00015 2697 5849 OQXB 0/0 100.0 95.9 MEG_4364 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:OQXB NA
contig00115 5506 6972 PHOR 0/0 100.0 93.5 MEG_5786 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_regulator:PHOR NA
ORTHO082EI
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00109 1799 2329 aac(3)-Ib_1 0/0 100.0 100.0 L06157 aac(3)-Ib Gentamicin
contig00073 6087 6947 aac(3)-IId_1 0/0 100.0 99.9 EU022314 aac(3)-IId Gentamicin, Tobramycin
contig00113 1538 2137 aac(6’)-Ib-cr_1 0/0 100.0 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00082 1656 2457 aadA2_1 0/0 97.9 99.9 NC_010870 aadA2 Streptomycin
contig00052 13755 14900 blaCMY-135_1 0/0 100.0 99.7 KP981366 blaCMY-135 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic_acid
contig00015 107313 108188 blaCTX-M-15_1 0/0 100.0 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00113 577 1407 blaOXA-1_1 0/0 100.0 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00109 854 1681 blaOXA-2_1 0/0 100.0 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
contig00073 255 1115 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00141 350 1000 catA1_1 0/0 98.6 99.8 V00622 catA1 Chloramphenicol
contig00082 2855 3352 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00137 442 924 dfrA14_5 0/0 100.0 99.6 DQ388123 dfrA14 Trimethoprim
contig00139 69 990 mph(A)_2 1/1 100.0 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00075 4401 5045 qnrB1_1 0/0 100.0 100.0 DQ351241 qnrB1 Ciprofloxacin
contig00082 312 1178 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00083 2980 3795 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00088 1427 2695 tet(A)_6 1/22 97.8 93.2 AF534183 tet(A) Doxycycline, Tetracycline
contig00093 1638 2822 tet(D)_1 0/0 100.0 100.0 AF467077 tet(D) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00109 1799 2329 AAC(3)-Ib 0/0 100.0 100.0 L06157:554-1085 AAC(3)-Ib is an integron-encoded aminoglycoside acetyltransferase in P. aeruginosa aminoglycoside
contig00073 6087 6947 AAC(3)-IId 0/0 100.0 99.9 EU022314.1:0-861 AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00113 1538 2137 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00082 1656 2435 aadA2 0/0 100.0 99.9 AF156486:5012-5792 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside
contig00141 350 1000 catI 0/0 98.6 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00052 13755 14900 CMY-135 0/0 100.0 99.7 KP981366.1:0-1146 CMY-135 is a class C beta-lactamase that confers resistance to cephamycin. cephamycin
contig00015 107313 108188 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00082 2855 3352 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00137 442 924 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00014 49710 50123 H-NS 0/0 100.0 90.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00139 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00113 577 1407 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00109 854 1681 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
contig00109 60 392 qacH 0/0 100.0 99.4 DQ149925.1:188-521 qacH is a subunit of the qac multidrug efflux pump in Vibrio cholerae fluoroquinolone
contig00075 4364 5045 QnrB17 1/1 100.0 99.1 AM919398:0-681 QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii fluoroquinolone
contig00082 312 1151 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00083 2980 3795 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00073 255 1115 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00088 1427 2695 tet(A) 1/22 97.8 93.2 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00093 1638 2822 tet(D) 0/0 100.0 100.0 AF467077.1:163-1348 TetD is a tetracycline efflux pump found exclusively in Gram-negative bacteria. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00109 1799 2329 (AGly)aac3-Ib 0/0 100.0 100.0 L06157:555-1085 (AGly)aac3-Ib NA
contig00073 6087 6947 (AGly)aac3-IId 0/0 100.0 99.9 EU022314:1-861 (AGly)aac3-IId NA
contig00144 126 922 (AGly)aadA1-pm 0/0 95.9 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00082 1656 2435 (AGly)aadA2 0/0 100.0 99.9 X68227:66-945 (AGly)aadA2 NA
contig00052 13755 14900 (Bla)blaCMY-135 0/0 100.0 99.7 KP981366:1-1146 (Bla)blaCMY-135 NA
contig00015 107313 108188 (Bla)blaCTX-M-15 0/0 100.0 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00113 577 1407 (Bla)blaOXA-1 0/0 100.0 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00109 854 1681 (Bla)blaOXA-2 0/0 100.0 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
contig00073 255 1115 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00075 4364 5045 (Flq)qnrB1 1/1 100.0 99.8 DQ351241:1-681 (Flq)qnrB1 NA
contig00139 69 974 (MLS)mph(A) 0/0 100.0 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00141 350 1000 (Phe)catA1 0/0 98.6 99.8 V00622:244-903 (Phe)catA1 NA
contig00082 312 1151 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00083 2980 3795 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00088 1427 2723 (Tet)tetA 1/22 100.0 93.3 JX424423:94438-95712 (Tet)tetA NA
contig00093 1638 2822 (Tet)tetD 0/0 100.0 100.0 AB089602:1521-2705 (Tet)tetD NA
contig00088 755 1396 (Tet)tetR 1/9 98.6 93.1 HF545434:53576-54226 (Tet)tetR NA
contig00082 2855 3352 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
contig00137 442 915 (Tmt)dfrA14 0/0 100.0 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00109 1799 2263 aac(3)-Ib 0/0 100.0 100.0 NG_047257.1 aminoglycoside N-acetyltransferase AAC(3)-Ib GENTAMICIN
contig00073 6087 6947 aac(3)-IId 0/0 100.0 100.0 NG_047251.1 aminoglycoside N-acetyltransferase AAC(3)-IId GENTAMICIN
contig00113 1538 2092 aac(6’)-Ib-D181Y 0/0 100.0 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00144 126 917 aadA1 0/0 100.0 100.0 NG_052536.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
contig00082 1656 2447 aadA2 0/0 100.0 100.0 NG_047343.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 STREPTOMYCIN
contig00052 13755 14900 blaCMY-135 0/0 100.0 99.7 NG_048805.1 class C beta-lactamase CMY-135 CEPHALOSPORIN
contig00015 107313 108188 blaCTX-M-15 0/0 100.0 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00113 577 1407 blaOXA-1 0/0 100.0 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00109 854 1681 blaOXA-2 0/0 100.0 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
contig00073 255 1115 blaTEM-1 0/0 100.0 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00141 350 1000 catA1 0/0 98.6 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00082 2855 3352 dfrA12 0/0 100.0 100.0 NG_047689.1 trimethoprim-resistant dihydrofolate reductase DfrA12 TRIMETHOPRIM
contig00137 442 915 dfrA14 0/0 100.0 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00139 69 990 mph(A) 1/1 100.0 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00075 4401 5045 qnrB1 0/0 100.0 100.0 NG_050469.1 quinolone resistance pentapeptide repeat protein QnrB1 QUINOLONE
contig00082 312 1151 sul1 0/0 100.0 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
contig00083 2980 3795 sul2 0/0 100.0 100.0 NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00088 1524 2723 tet(A) 0/0 100.0 100.0 NG_048157.1 tetracycline efflux MFS transporter Tet(A) TETRACYCLINE
contig00093 1638 2822 tet(D) 0/0 100.0 99.9 NG_048184.1 tetracycline efflux MFS transporter Tet(D) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00073 6087 6947 AAC3 0/0 100.0 100.0 MEG_64 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00109 1799 2329 AAC3-PRIME 0/0 100.0 100.0 MEG_69 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3-PRIME NA
contig00082 1656 2457 ANT3-DPRIME 0/0 97.9 99.9 MEG_975 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00144 126 922 ANT3-DPRIME 0/0 95.9 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00141 339 1000 CATA 0/0 98.7 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00052 12748 13623 CMY 0/0 100.0 94.1 MEG_1992 Drugs:betalactams:Class_C_betalactamases:CMY NA
contig00052 13755 14982 CMY 0/0 100.0 99.6 MEG_1958 Drugs:betalactams:Class_C_betalactamases:CMY NA
contig00051 1023 1965 CTX 0/0 100.0 97.2 MEG_2435 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig00082 2855 3352 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00137 442 915 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00014 49710 50123 HNS 0/0 100.0 90.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00139 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00113 577 1407 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00109 60 392 QACF 0/0 100.0 100.0 MEG_5838 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACF NA
contig00075 4364 5045 QNRB 1/1 100.0 99.1 MEG_5928 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRB NA
contig00082 185 1152 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00083 2980 3795 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00088 1524 2723 TETA 0/0 100.0 100.0 MEG_7021 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00093 1638 2822 TETC 0/0 100.0 99.9 MEG_7061 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETC NA
ORTHO08HW
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1693 2553 aac(3)-IIa_1 0/0 100 99.8 X51534 aac(3)-IIa Gentamicin, Tobramycin
contig00072 1539 2138 aac(6’)-Ib-cr_1 0/0 100 100.0 DQ303918 aac(6’)-Ib-cr Ciprofloxacin
contig00066 843 1646 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00080 134 949 aph(3’)-Ia_1 0/0 100 100.0 V00359 aph(3’)-Ia
contig00066 7 843 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00028 2635 3510 blaCTX-M-15_1 0/0 100 100.0 AY044436 blaCTX-M-15 Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin
contig00072 578 1408 blaOXA-1_1 0/0 100 100.0 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig00074 533 1393 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00056 9663 10322 catA1_1 0/0 100 99.8 V00622 catA1 Chloramphenicol
contig00056 3168 3650 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00029 3070 4302 mdf(A)_1 0/0 100 98.8 Y08743 mdf(A)
contig00079 69 990 mph(A)_2 1/1 100 99.7 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00066 1707 2522 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
contig00065 2274 3479 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1693 2553 AAC(3)-IIe 0/0 100.0 99.5 EU022315.1:0-861 AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli aminoglycoside
contig00072 1539 2138 AAC(6’)-Ib-cr 0/0 100.0 100.0 DQ303918:0-600 AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously aminoglycoside, fluoroquinolone
contig00005 89400 92549 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 219346 222459 acrD 0/0 100.0 99.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00012 117960 119117 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 119129 122233 acrF 0/0 100.0 99.1 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00012 116899 117561 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00066 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00080 136 949 APH(3’)-Ia 0/0 99.8 99.4 BX664015.1:103833-103017 APH(3’)-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3’)-Ic an aminoglycoside phosphotransferase encoded by plasmids transposons and genomic islands in K. pneumoniae A. baumannii S. marcescens Corynebacterium spp. Photobacterium spp. and Citrobacter spp. aminoglycoside
contig00066 7 843 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00024 70234 71055 bacA 0/0 100.0 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00004 104834 105556 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00004 103434 104837 baeS 0/0 100.0 98.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00056 9663 10322 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00022 22831 24204 cpxA 0/0 100.0 98.6 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00006 14925 15557 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00028 2635 3510 CTX-M-15 0/0 100.0 100.0 AY044436:1435-2311 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
contig00056 3168 3650 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00039 5182 6354 emrA 0/0 100.0 97.5 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00039 3627 5165 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00002 123600 124655 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00039 6481 7011 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 122056 123600 emrY 1/6 100.0 99.3 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00016 88523 90166 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 92572 93765 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 139347 140480 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00002 186924 188228 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.6 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00005 3380 4537 Escherichia_coli_ampH 0/0 100.0 99.4 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00011 2794 3126 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00029 3070 4302 Escherichia_coli_mdfA 0/0 100.0 97.2 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00002 125179 125793 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00002 125798 129391 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00040 2699 3427 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00040 1507 2331 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00007 173074 173487 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00020 8282 8954 kdpE 0/0 99.3 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00001 390275 390658 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00004 94574 95821 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00004 95821 98943 mdtB 0/0 100.0 99.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00004 98944 102021 mdtC 0/0 100.0 98.6 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00040 6928 8085 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00040 3790 6903 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00017 86688 87914 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00017 76849 78057 mdtH 0/0 100.0 98.4 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00003 220474 221706 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00038 26562 27593 mdtN 0/0 100.0 98.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00038 24511 26562 mdtO 0/0 100.0 98.4 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00038 23048 24514 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00079 69 974 mphA 0/0 100.0 100.0 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00002 243696 244170 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00008 51499 53247 msbA 0/0 100.0 99.4 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00072 578 1408 OXA-1 0/0 100.0 100.0 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00002 17921 18889 pmrF 0/0 100.0 99.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00066 1707 2522 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00074 533 1393 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00065 2274 3479 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00023 73061 74548 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00033 42513 44156 yojI 0/0 100.0 98.1 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1693 2553 (AGly)aac3-IIa 0/0 100 99.8 X51534:91-951 (AGly)aac3-IIa NA
contig00080 134 949 (AGly)aph3-Ia 0/0 100 99.9 HQ840942:23569-24384 (AGly)aph3-Ia NA
contig00066 843 1646 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00066 7 843 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00002 186924 188228 (Bla)AmpC1_Ecoli 0/0 100 98.6 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00010 139347 140480 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00005 3380 4537 (Bla)ampH_Ecoli 0/0 100 99.4 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00028 2635 3510 (Bla)blaCTX-M-15 0/0 100 100.0 JQ686199:261-1136 (Bla)blaCTX-M-15 NA
contig00072 578 1408 (Bla)blaOXA-1 0/0 100 100.0 JQ682867:1-831 (Bla)blaOXA-1 NA
contig00074 533 1393 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00020 61082 62983 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00079 69 974 (MLS)mph(A) 0/0 100 100.0 DQ445270:1626-2531 (MLS)mph(A) NA
contig00056 9663 10322 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00066 1707 2522 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00065 2274 3479 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig00056 3168 3641 (Tmt)dfrA14 0/0 100 100.0 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1693 2553 aac(3)-IIe 0/0 100 99.8 NG_047244.1 aminoglycoside N-acetyltransferase AAC(3)-IIe GENTAMICIN
contig00072 1539 2093 aac(6’)-Ib-D181Y 0/0 100 99.8 NG_067946.1 AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase AMIKACIN, KANAMYCIN, TOBRAMYCIN
contig00066 843 1670 aph(3’’)-Ib 0/0 100 100.0 NG_056002.2 aminoglycoside O-phosphotransferase APH(3’’)-Ib STREPTOMYCIN
contig00080 134 949 aph(3’)-Ia 0/0 100 100.0 NG_047430.1 aminoglycoside O-phosphotransferase APH(3’)-Ia KANAMYCIN
contig00066 7 843 aph(6)-Id 0/0 100 100.0 NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
contig00028 2635 3510 blaCTX-M-15 0/0 100 100.0 NG_048935.1 class A extended-spectrum beta-lactamase CTX-M-15 CEPHALOSPORIN
contig00010 139347 140480 blaEC-15 0/0 100 98.6 NG_049081.1 class C extended-spectrum beta-lactamase EC-15 CEPHALOSPORIN
contig00072 578 1408 blaOXA-1 0/0 100 100.0 NG_049392.1 oxacillin-hydrolyzing class D beta-lactamase OXA-1 CEPHALOSPORIN
contig00074 533 1393 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
contig00056 9663 10322 catA1 0/0 100 99.8 NG_047582.1 type A-1 chloramphenicol O-acetyltransferase CHLORAMPHENICOL
contig00056 3168 3641 dfrA14 0/0 100 100.0 NG_056035.1 trimethoprim-resistant dihydrofolate reductase DfrA14 TRIMETHOPRIM
contig00079 69 990 mph(A) 1/1 100 99.7 NG_047986.1 Mph(A) family macrolide 2’-phosphotransferase MACROLIDE
contig00066 1707 2522 sul2 0/0 100 99.9 NG_048118.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
contig00065 2274 3479 tet(B) 0/0 100 100.0 NG_048163.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00070 1693 2553 AAC3 0/0 100.0 99.8 MEG_44 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 NA
contig00005 92572 93765 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 89400 92549 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 219346 222459 ACRD 0/0 100.0 99.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00012 117960 119117 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00012 119129 122233 ACRF 0/0 100.0 99.1 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00012 116899 117561 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00005 3380 4537 AMPH 0/0 100.0 99.4 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00066 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00080 134 949 APH3-PRIME 0/0 100.0 100.0 MEG_1079 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-PRIME NA
contig00066 7 843 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00004 80054 81906 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00024 70234 71055 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00004 104834 105556 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00004 103434 104837 BAES 0/0 100.0 98.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00004 218030 219220 BCR 0/0 100.0 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00010 139347 140480 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00056 9663 10333 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00022 22136 22834 CPXAR 0/0 100.0 99.1 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00022 22831 24204 CPXAR 0/0 100.0 99.2 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00006 14925 15557 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00056 3168 3641 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00039 5182 6354 EMRA 0/0 100.0 97.5 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00039 3627 5165 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00014 22120 23310 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00002 123600 124763 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00039 6481 7011 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00002 122056 123600 EMRY 1/6 100.0 99.3 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00016 88523 90166 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00002 125798 129391 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00040 2699 3427 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00040 1507 2331 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00007 173074 173487 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00020 8282 8954 KDPE 0/0 99.3 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00001 390275 390664 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00001 390678 391112 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00029 3070 4302 MDFA 0/0 100.0 98.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00004 94574 95821 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00004 95821 98943 MDTB 0/0 100.0 99.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00004 98944 102021 MDTC 0/0 100.0 98.6 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00040 6928 8085 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00040 3790 6903 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00017 86688 87914 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00017 76849 78057 MDTH 0/0 100.0 98.4 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00001 328706 329035 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00001 328354 328719 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00001 257347 258720 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00003 220474 221706 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00038 26562 27593 MDTN 0/0 100.0 98.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00038 24511 26562 MDTO 0/0 100.0 98.4 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00038 23048 24514 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00079 69 990 MPHA 1/1 100.0 99.7 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00002 243696 244170 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00008 51499 53247 MSBA 0/0 100.0 99.4 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00011 2794 3126 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00072 578 1408 OXA 0/0 100.0 100.0 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00020 61082 62983 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00002 186924 188228 PBP4B 0/0 100.0 98.6 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00002 17921 18889 PMRF 0/0 100.0 99.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00003 156554 157423 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00038 1110 1432 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00066 1707 2522 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00074 515 1760 TEM 0/0 98.3 99.2 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00065 2274 3479 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00065 4273 4689 TETD 0/0 100.0 100.0 MEG_7070 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETD NA
contig00033 42513 44156 YOGI 0/0 100.0 98.1 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA


Summary figures

Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample

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CARD
ARG-ANNOT
NCBI
MEGARES


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Plasmid Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select sample

ID002
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00103 1011 1120 Col440I_1 0/0 96.5 91.8 CP023920.1 Col440I_1__CP023920.1
contig00133 155 268 Col440I_1 0/0 100.0 96.5 CP023920.1 Col440I_1__CP023920.1
contig00132 1049 1608 IncFIB(pECLA)_1_pECLA 0/0 100.0 100.0 CP001919 IncFIB(pECLA)_1_pECLA_CP001919
ID003
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00058 2468 2598 ColRNAI_1 1/1 100 90.1 DQ298019 ColRNAI_1__DQ298019
contig00049 3863 4627 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID005
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00112 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00096 3274 3427 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00039 15730 16372 IncFIB(pB171)_1_pB171 0/0 100 99.4 AB024946 IncFIB(pB171)_1_pB171_AB024946
contig00055 16887 17147 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00033 24651 25415 IncY_1 0/0 100 99.7 K02380 IncY_1__K02380
ID006
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00098 226 739 IncN_1 0/0 100 100.0 AY046276 IncN_1__AY046276
contig00089 4434 5198 IncY_1 0/0 100 99.1 K02380 IncY_1__K02380
ID007I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00134 429 690 Col(MG828)_1 0/0 100.0 92.0 NC_008486 Col(MG828)_1__NC_008486
contig00070 378 519 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00093 2967 3120 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00079 3365 3752 IncFIA_1 0/0 100.0 100.0 AP001918 IncFIA_1__AP001918
contig00073 8473 9154 IncFIB(AP001918)_1 0/0 100.0 98.0 AP001918 IncFIB(AP001918)_1__AP001918
contig00108 1556 1815 IncFII(pCoo)_1_pCoo 2/4 98.8 95.1 CR942285 IncFII(pCoo)_1_pCoo_CR942285
contig00094 1135 1395 IncFII(pRSB107)_1_pRSB107 0/0 100.0 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00054 7790 7931 IncI1_1_Alpha 0/0 100.0 98.6 AP005147 IncI1_1_Alpha_AP005147
ID011
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00068 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00047 2894 3035 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00053 3338 3491 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00034 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00034 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
ID013I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00056 2962 3103 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00043 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00043 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
contig00076 255 515 IncFII(pRSB107)_1_pRSB107 0/0 100.0 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00022 65094 65978 p0111_1 0/0 100.0 98.9 AP010962 p0111_1__AP010962
ID016I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00364 2465 2578 Col440I_1 0/0 100 96.5 CP023920.1 Col440I_1__CP023920.1
contig00433 646 759 Col440I_1 0/0 100 91.2 CP023920.1 Col440I_1__CP023920.1
contig00180 7748 8135 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00288 4186 4867 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00375 1143 1562 IncHI1A(CIT)_1_pNDM-CIT 0/0 100 100.0 JX182975 IncHI1A(CIT)_1_pNDM-CIT_JX182975
contig00147 8324 8861 IncHI1B(CIT)_1_pNDM-CIT 0/0 100 100.0 JX182975 IncHI1B(CIT)_1_pNDM-CIT_JX182975
contig00039 41798 42373 IncX5_2 0/0 100 100.0 MF062700.1 IncX5_2__MF062700.1
ID017
## [1] "NO PLASMID FOUND!!"
ID018CT
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00105 2794 3475 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00079 13392 14136 IncP1_3 0/0 100 100.0 KX377410 IncP1_3__KX377410
contig00083 2157 3041 p0111_1 0/0 100 98.6 AP010962 p0111_1__AP010962
ID019
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00058 336 449 Col440I_1 0/0 100 93.9 CP023920.1 Col440I_1__CP023920.1
ID01CT
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00082 519 632 Col440I_1 0/0 100 90.3 CP023920.1 Col440I_1__CP023920.1
contig00013 81165 81491 IncHI2_1 0/0 100 100.0 BX664015 IncHI2_1__BX664015
contig00013 96357 96986 IncHI2A_1 0/0 100 100.0 BX664015 IncHI2A_1__BX664015
ID021
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00047 3388 3775 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00047 19923 20604 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID027
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00062 346 499 Col156_1 0/0 100 98.7 NC_009781 Col156_1__NC_009781
contig00049 9099 9482 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00053 9046 9727 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID031
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00143 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00148 433 694 Col(MG828)_1 0/0 100 92.8 NC_008486 Col(MG828)_1__NC_008486
contig00116 4077 4230 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00069 1832 2513 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00082 2741 3505 IncY_1 0/0 100 99.0 K02380 IncY_1__K02380
ID034I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00059 3095 3776 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID041
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00040 24148 24650 IncFIC(FII)_1 2/4 100 95.6 AP001918 IncFIC(FII)_1__AP001918
contig00061 3030 3794 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID043I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00066 9109 9492 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00091 1834 2515 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID044
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00137 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00069 9239 9626 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00098 7051 7732 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00122 3602 3838 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 90.8 97.5 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
ID046II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00362 2792 2901 Col440I_1 0/0 96.5 96.4 CP023920.1 Col440I_1__CP023920.1
contig00063 735 1294 IncFIB(K)_1_Kpn3 0/0 100.0 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00022 3494 4031 IncHI1B(CIT)_1_pNDM-CIT 0/0 100.0 93.5 JX182975 IncHI1B(CIT)_1_pNDM-CIT_JX182975
contig00001 38199 38963 IncY_1 0/0 100.0 98.8 K02380 IncY_1__K02380
contig00004 23923 24917 pSL483_1 0/0 100.0 93.0 CP001137 pSL483_1__CP001137
ID049
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00104 6252 6639 IncFIA_1 0/0 100 99.5 AP001918 IncFIA_1__AP001918
contig00077 1832 2513 IncFIB(AP001918)_1 0/0 100 97.2 AP001918 IncFIB(AP001918)_1__AP001918
contig00068 19181 19441 IncFII(pRSB107)_1_pRSB107 0/0 100 99.6 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID051
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00047 3584 3725 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00054 3142 3295 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00034 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00034 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
ID054
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00043 5286 6050 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID057
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00062 2909 3062 Col156_1 0/0 100 98.7 NC_009781 Col156_1__NC_009781
contig00052 9119 9502 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00059 8470 9151 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID066II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01182 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00131 3630 3771 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00235 5514 5644 ColRNAI_1 1/1 100.0 90.1 DQ298019 ColRNAI_1__DQ298019
contig00613 2056 2737 IncFIB(AP001918)_1 0/0 100.0 98.0 AP001918 IncFIB(AP001918)_1__AP001918
ID067
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00041 23923 24917 pSL483_1 0/0 100 93 CP001137 pSL483_1__CP001137
ID068
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00059 2189 2870 IncFIB(AP001918)_1 0/0 100 96.8 AP001918 IncFIB(AP001918)_1__AP001918
contig00039 4843 5402 IncFIB(K)_1_Kpn3 0/0 100 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
ID073I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00061 2382 3063 IncFIB(AP001918)_1 0/0 100 96.9 AP001918 IncFIB(AP001918)_1__AP001918
contig00073 3423 3982 IncFIB(K)_1_Kpn3 0/0 100 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
ID077
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00048 3030 3794 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID081I
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00138 1071 1332 Col(MG828)_1 0/0 100.0 93.1 NC_008486 Col(MG828)_1__NC_008486
contig00040 5825 5979 IncB/O/K/Z_2 1/1 96.2 96.1 GU256641 IncB/O/K/Z_2__GU256641
contig00089 2189 2870 IncFIB(AP001918)_1 0/0 100.0 96.8 AP001918 IncFIB(AP001918)_1__AP001918
contig00063 5029 5588 IncFIB(K)_1_Kpn3 0/0 100.0 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00129 574 834 IncFII_1 0/0 100.0 100.0 AY458016 IncFII_1__AY458016
contig00128 1042 1303 IncFII(pRSB107)_1_pRSB107 1/1 100.0 96.2 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID086II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00048 3584 3725 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00055 3142 3295 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00035 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00035 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
ID088
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00086 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00054 9099 9482 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00057 8464 9145 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00044 8845 9218 IncX4_1 0/0 100 99.7 CP002895 IncX4_1__CP002895
ID092
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00776 3099 3486 IncFIA_1 0/0 100 99.5 AP001918 IncFIA_1__AP001918
contig00164 1832 2513 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00772 191 451 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00436 2830 3594 IncY_1 0/0 100 99.1 K02380 IncY_1__K02380
ID094LLFII
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00017 14318 14705 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00015 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00151 1238 1498 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00049 87 851 IncY_1 0/0 100 99.7 K02380 IncY_1__K02380
ID099
## [1] "NO PLASMID FOUND!!"
ID09CT
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00031 3158 3922 IncY_1 0/0 100 99.1 K02380 IncY_1__K02380
ID101
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00032 19680 19821 IncI1_1_Alpha 0/0 100 100 AP005147 IncI1_1_Alpha_AP005147
ID107II
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00046 14319 14706 IncFIA_1 0/0 100 99.5 AP001918 IncFIA_1__AP001918
contig00051 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00069 2929 3189 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID124
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00051 9254 9641 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00065 8641 9322 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00058 3451 3711 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 100 98.1 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
ID127
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00044 9011 9398 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00044 25546 26227 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID128
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00047 4077 4230 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00045 5514 5644 ColRNAI_1 1/1 100 90.1 DQ298019 ColRNAI_1__DQ298019
contig00036 9281 9668 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00021 38975 39235 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00025 28681 29392 IncX4_2 0/0 100 98.7 FN543504 IncX4_2__FN543504
contig00031 8590 9354 IncY_1 0/0 100 99.1 K02380 IncY_1__K02380
ID129E
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00005 120792 121118 IncHI2_1 0/0 100 100.0 BX664015 IncHI2_1__BX664015
contig00005 135984 136613 IncHI2A_1 0/0 100 100.0 BX664015 IncHI2A_1__BX664015
contig00024 25905 26669 IncY_1 0/0 100 99.3 K02380 IncY_1__K02380
ID130
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00034 336 449 Col440I_1 0/0 100 93.9 CP023920.1 Col440I_1__CP023920.1
contig00033 3030 3794 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID134
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00001 99941 100267 IncHI2_1 0/0 100 100.0 BX664015 IncHI2_1__BX664015
contig00001 84446 85075 IncHI2A_1 0/0 100 100.0 BX664015 IncHI2A_1__BX664015
contig00002 25905 26669 IncY_1 0/0 100 99.3 K02380 IncY_1__K02380
ID136
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00049 3030 3794 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID141
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00028 95 356 Col(MG828)_1 0/0 100 93.1 NC_008486 Col(MG828)_1__NC_008486
contig00019 118 799 IncFIB(AP001918)_1 0/0 100 98.0 AP001918 IncFIB(AP001918)_1__AP001918
ID142
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00007 2910 3469 IncFIB(K)_1_Kpn3 0/0 100 91.1 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig01255 258 827 IncHI1B_1_pNDM-MAR 0/0 100 99.5 JN420336 IncHI1B_1_pNDM-MAR_JN420336
ID164
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00061 8836 9219 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00025 620 1007 IncFIA(HI1)_1_HI1 0/0 100 100.0 AF250878 IncFIA(HI1)_1_HI1_AF250878
contig00067 8471 9152 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00032 38067 38486 IncHI1A_1 0/0 100 100.0 AF250878 IncHI1A_1__AF250878
contig00032 24451 24990 IncHI1B(R27)_1_R27 0/0 100 100.0 AF250878 IncHI1B(R27)_1_R27_AF250878
ID169
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00098 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00066 3584 3725 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00076 3338 3491 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00049 19761 20148 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00049 8473 9154 IncFIB(AP001918)_1 0/0 100.0 99.7 AP001918 IncFIB(AP001918)_1__AP001918
ID177
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00061 816 967 Col156_1 0/0 98.7 98.0 NC_009781 Col156_1__NC_009781
contig00062 2382 3063 IncFIB(AP001918)_1 0/0 100.0 96.8 AP001918 IncFIB(AP001918)_1__AP001918
contig00055 3388 3947 IncFIB(K)_1_Kpn3 0/0 100.0 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00034 34054 34427 IncX3_1 0/0 100.0 100.0 JN247852 IncX3_1__JN247852
ID178
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00080 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00064 4056 4209 Col156_1 0/0 100.0 94.8 NC_009781 Col156_1__NC_009781
contig00061 3210 3320 Col440I_1 0/0 97.4 92.8 CP023920.1 Col440I_1__CP023920.1
contig00033 13744 13898 IncB/O/K/Z_2 1/1 96.2 96.1 GU256641 IncB/O/K/Z_2__GU256641
contig00041 14319 14706 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00044 1448 2129 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00070 377 637 IncFII(pRSB107)_1_pRSB107 0/0 100.0 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID182
## [1] "NO PLASMID FOUND!!"
ID186
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00051 1834 2515 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
ID187
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00073 3392 3951 IncFIB(K)_1_Kpn3 0/0 100 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00056 5945 6829 p0111_1 0/0 100 98.6 AP010962 p0111_1__AP010962
ID195
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00034 3158 3922 IncY_1 0/0 100 99.1 K02380 IncY_1__K02380
ID197
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00054 9148 9531 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00059 8464 9145 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00046 28680 29391 IncX4_2 0/0 100 98.9 FN543504 IncX4_2__FN543504
ID199
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00052 400 632 Col(BS512)_1 0/0 100.0 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00027 3451 3838 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00027 26615 27296 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00048 3322 3558 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 90.8 97.9 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
contig00036 10337 10710 IncX1_1 0/0 100.0 94.9 EU370913 IncX1_1__EU370913
ID208
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00629 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00701 1071 1332 Col(MG828)_1 0/0 100 93.1 NC_008486 Col(MG828)_1__NC_008486
contig00114 8808 9195 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00108 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00182 8871 9131 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
contig00090 10347 11111 IncY_1 0/0 100 99.9 K02380 IncY_1__K02380
ID214
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00072 5798 6181 IncFIA_1 0/0 99 99.7 AP001918 IncFIA_1__AP001918
contig00073 8464 9145 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00057 15064 15205 IncI1_1_Alpha 0/0 100 97.9 AP005147 IncI1_1_Alpha_AP005147
ID224
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00084 1810 2071 Col(MG828)_1 0/0 100.0 93.9 NC_008486 Col(MG828)_1__NC_008486
contig00092 1033 1290 Col(MG828)_1 0/0 98.5 94.2 NC_008486 Col(MG828)_1__NC_008486
contig00074 414 620 Col8282_1 0/0 100.0 100.0 DQ995352 Col8282_1__DQ995352
contig00060 3365 3752 IncFIA_1 0/0 100.0 99.7 AP001918 IncFIA_1__AP001918
contig00067 3993 4674 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00049 1 237 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 90.8 97.9 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
contig00045 2444 3155 IncX4_2 0/0 100.0 98.9 FN543504 IncX4_2__FN543504
ID228
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00088 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00060 3338 3491 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00039 18751 19138 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00039 7463 8144 IncFIB(AP001918)_1 0/0 100 99.7 AP001918 IncFIB(AP001918)_1__AP001918
contig00064 1373 1633 IncFII_1 0/0 100 100.0 AY458016 IncFII_1__AY458016
contig00032 30264 30637 IncX1_1 0/0 100 94.7 EU370913 IncX1_1__EU370913
ID229
## [1] "NO PLASMID FOUND!!"
ID231
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00047 5286 6050 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
ID233
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00100 9396 9955 IncFIB(K)_1_Kpn3 0/0 100 91.1 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00010 29581 30019 IncFIB(Mar)_1_pNDM-Mar 0/0 100 100.0 JN420336 IncFIB(Mar)_1_pNDM-Mar_JN420336
ID235
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00081 400 632 Col(BS512)_1 0/0 100 100.0 NC_010656 Col(BS512)_1__NC_010656
contig00039 14319 14706 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00043 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00074 204 464 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
ID237
## [1] "NO PLASMID FOUND!!"
ID256
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00054 3630 3771 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00041 10016 10697 IncFIB(AP001918)_1 0/0 100.0 96.6 AP001918 IncFIB(AP001918)_1__AP001918
contig00038 3322 3580 IncFII(29)_1_pUTI89 0/0 100.0 99.6 CP003035 IncFII(29)_1_pUTI89_CP003035
contig00025 28012 28327 IncI2_1_Delta 0/0 100.0 98.4 AP002527 IncI2_1_Delta_AP002527
contig00019 65623 66387 IncY_1 0/0 100.0 99.7 K02380 IncY_1__K02380
ID263
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00075 4074 4227 Col156_1 0/0 100 94.8 NC_009781 Col156_1__NC_009781
contig00046 9102 9489 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00046 27503 28184 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00064 4854 5114 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5 0/0 100 98.1 CP024805.1 IncFII(pAMA1167-NDM-5)_1_pAMA1167-NDM-5_CP024805.1
ID282
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00841 1189 1302 Col440I_1 0/0 100.0 91.2 CP023920.1 Col440I_1__CP023920.1
contig00179 5514 5644 ColRNAI_1 1/1 100.0 90.1 DQ298019 ColRNAI_1__DQ298019
contig00042 14322 14684 IncFIA_1 0/0 93.6 99.7 AP001918 IncFIA_1__AP001918
contig00145 1335 2016 IncFIB(AP001918)_1 0/0 100.0 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00008 37934 38430 IncFIC(FII)_1 1/2 99.6 95.6 AP001918 IncFIC(FII)_1__AP001918
contig00028 6293 6434 IncI1_1_Alpha 0/0 100.0 97.9 AP005147 IncI1_1_Alpha_AP005147
contig00266 261 774 IncN_1 0/0 100.0 100.0 AY046276 IncN_1__AY046276
contig00003 13402 14146 IncP1_3 0/0 100.0 100.0 KX377410 IncP1_3__KX377410
contig00013 1289 2000 IncX4_2 0/0 100.0 98.9 FN543504 IncX4_2__FN543504
ORTHO013EI
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00203 1798 2440 IncFIB(pB171)_1_pB171 0/0 100 91.5 AB024946 IncFIB(pB171)_1_pB171_AB024946
contig00170 3749 3978 IncFII(Yp)_1_Yersenia 0/0 100 99.6 CP000670 IncFII(Yp)_1_Yersenia_CP000670
ORTHO055E
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00227 4351 4910 IncFIB(K)_1_Kpn3 0/0 100 98.9 JN233704 IncFIB(K)_1_Kpn3_JN233704
contig00002 22275 22713 IncFIB(Mar)_1_pNDM-Mar 0/0 100 99.3 JN420336 IncFIB(Mar)_1_pNDM-Mar_JN420336
contig00021 34348 34917 IncHI1B_1_pNDM-MAR 0/0 100 100.0 JN420336 IncHI1B_1_pNDM-MAR_JN420336
contig00145 5699 5949 IncR_1 0/0 100 100.0 DQ449578 IncR_1__DQ449578
ORTHO082EI
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00062 1798 2440 IncFIB(pB171)_1_pB171 0/0 100 91.5 AB024946 IncFIB(pB171)_1_pB171_AB024946
contig00074 2900 3129 IncFII(Yp)_1_Yersenia 0/0 100 99.6 CP000670 IncFII(Yp)_1_Yersenia_CP000670
contig00053 7870 8465 RepA_1_pKPC-CAV1321 0/0 100 100.0 CP011611 RepA_1_pKPC-CAV1321_CP011611
ORTHO08HW
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00046 14320 14707 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00047 2338 3019 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00019 40413 41177 IncY_1 0/0 100 99.2 K02380 IncY_1__K02380


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Virulence Factor Determination


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select the sample

ID002
Contig Start End Strand Gene Coverage Identity Accession Product
contig00048 22701 23534 - csgG 100 80.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00049 16600 17645 - ompA 99 84.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID003
Contig Start End Strand Gene Coverage Identity Accession Product
contig00021 52979 54407 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00029 36588 37616 - chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 43780 44772 + chuU 100.0 96.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 44739 45539 + chuV 100.0 98.1 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 41264 42601 + chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 43108 43731 + chuY 100.0 96.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 94251 94706 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 95461 96111 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 96530 96946 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 96973 97806 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 87719 88465 - entA 100.0 97.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 88465 89322 - entB 100.0 98.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 90956 92143 - entC 100.0 97.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 106600 107370 + entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 89336 90946 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 98819 102672 - entF 99.2 95.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 93280 94530 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 3737 5635 + espL1 100.0 96.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 6763 8949 - espL4 100.0 97.4 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 8773 10025 + espR1 99.4 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 215089 216197 - espR4 97.2 84.6 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 87915 89336 + espX1 100.0 96.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 41231 42811 + espX4 100.0 95.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 72307 73599 - espX5 100.0 95.8 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 48462 49228 - espY1 99.9 93.9 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 31446 31996 - espY2 96.5 88.8 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 31377 32948 + espY3 100.0 95.5 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 39565 41973 + espY4 100.0 96.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 106407 110657 - fdeC 100.0 95.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00014 104335 106575 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 92320 93276 + fepB 100.0 97.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 96631 97446 + fepC 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 94629 95645 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 95642 96634 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 102890 104092 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00007 195230 195841 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 76002 76604 + fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 193864 194589 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 191161 193797 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 77081 77675 + fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 190621 191154 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 190105 190608 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 189183 190094 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 194626 195165 - fimI 100.0 98.9 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 199441 200271 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 197351 199201 - gspD 100.0 96.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 195858 197351 - gspE 100.0 95.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 194659 195858 - gspF 100.0 94.9 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 194163 194618 - gspG 100.0 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 193596 194126 - gspH 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 193228 193599 - gspI 100.0 96.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 192626 193195 - gspJ 100.0 95.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 191652 192629 - gspK 100.0 97.4 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 190477 191337 - gspL 100.0 95.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 189940 190361 - gspM 99.8 94.5 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 175110 176786 + kpsD 100.0 98.1 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 166279 167331 + ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 157773 158323 + papX 99.6 80.7 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00029 37665 39647 - shuA 100.0 98.5 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00029 40252 41244 + shuT 100.0 98.1 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00029 42614 43108 + shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00009 125988 126741 + yagV/ecpE 99.7 97.9 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 124421 126064 + yagW/ecpD 100.0 98.9 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121906 124431 + yagX/ecpC 100.0 98.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121212 121880 + yagY/ecpB 100.0 97.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 120568 121155 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 119903 120493 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID005
Contig Start End Strand Gene Coverage Identity Accession Product
contig00054 8158 8508 - aap/aspU 100.0 98.0 YP_006099176 (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042]
contig00039 38755 39270 + aggA 100.0 85.7 AAA57454 (aggA) fimbrial major subunit [AAFs (VF0214)] [Escherichia coli 17-2]
contig00039 38217 38654 + aggB 100.0 98.2 AAA57453 (aggB) fimbrial minor subunit [AAFs (VF0214)] [Escherichia coli 17-2]
contig00039 35675 38203 + aggC 100.0 99.7 AAA57452 (aggC) usher protein [AAFs (VF0214)] [Escherichia coli 17-2]
contig00039 34903 35661 + aggD 100.0 99.6 AAA57451 (aggD) chaperone [AAFs (VF0214)] [Escherichia coli 17-2]
contig00023 53224 54652 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00020 74060 75088 + chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00020 66904 67896 - chuU 100.0 96.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00020 66137 66937 - chuV 100.0 98.2 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00020 69075 70412 - chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00020 67945 68568 - chuY 100.0 96.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00021 83214 83669 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 84424 85074 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 85493 85909 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 85936 86769 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 87837 88583 - entA 100.0 97.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 88583 89440 - entB 100.0 98.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 91074 92261 - entC 100.0 97.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 106719 107489 + entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 89454 91064 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 98938 102791 - entF 99.3 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 93398 94648 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 13790 15688 + espL1 100.0 96.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 6763 8949 - espL4 100.0 97.4 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 8773 10025 + espR1 99.4 94.3 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 220396 221531 - espR4 99.6 84.5 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 91169 92590 - espX1 100.0 96.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 41231 42811 + espX4 100.0 95.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 72307 73599 - espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 131277 132010 + espY1 97.5 93.9 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 145208 145777 - espY2 100.0 94.6 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 31222 32793 + espY3 100.0 95.4 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 19207 21615 + espY4 100.0 96.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 106396 110646 - fdeC 100.0 95.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00014 104454 106694 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 92438 93394 + fepB 100.0 97.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 96749 97564 + fepC 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 94747 95763 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 95760 96752 + fepG 100.0 94.2 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 103009 104211 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00035 17433 18263 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 18503 20353 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 20353 21846 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 21846 23045 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 23086 23541 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 23578 24108 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 24105 24476 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 24509 25078 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 25075 26052 + gspK 100.0 96.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 26367 27227 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 27343 27764 + gspM 99.8 92.7 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00035 42485 44161 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 28823 29599 + kpsM 100.0 94.8 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 88637 89689 + ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00020 72029 74011 + shuA 100.0 98.5 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00020 70432 71424 - shuT 100.0 98.1 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00020 68568 69062 - shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00009 125978 126731 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 124411 126054 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121896 124421 + yagX/ecpC 100.0 98.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121202 121870 + yagY/ecpB 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 120558 121145 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 119893 120483 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID006
Contig Start End Strand Gene Coverage Identity Accession Product
contig00094 630 1085 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00094 1839 2489 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00094 2908 3324 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00094 3351 4184 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 7812 8558 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 8558 9415 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 11049 12236 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 26880 27650 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 9429 11039 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 19099 22952 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 13559 14809 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00048 11028 12083 + espR1 83.8 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 24119 25699 - espX4 99.9 93.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 5443 6736 - espX5 100.0 95.8 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00096 2533 6537 - fdeC 93.9 93.7 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00052 24615 26855 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 12599 13555 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 16910 17725 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 14908 15924 + fepD 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 15921 16913 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00052 23170 24372 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00079 11874 12479 - fimA 100.0 95.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00106 1427 2029 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 10509 11234 - fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 7806 10442 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00106 353 949 - fimE 100.0 98.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 7266 7799 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 6750 7253 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 5828 6739 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00079 11271 11809 - fimI 99.8 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00041 3 982 + gspF 81.7 95.6 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 1023 1478 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 1515 2045 + gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 2042 2413 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 2446 3015 + gspJ 100.0 96.5 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 3012 3989 + gspK 100.0 96.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 4304 5164 + gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 5280 5702 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 103804 104844 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID007I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 71083 72511 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00058 16900 18561 + chuA 85.4 99.6 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 15266 16258 - chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 11738 12730 - chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 10971 11771 - chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 13909 15246 - chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 13402 13896 - chuX 100.0 99.8 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00058 12779 13402 - chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00016 102979 103434 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 104187 104837 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 105256 105672 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 105699 106532 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 99291 100037 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 100037 100894 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 102528 103715 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00062 6354 7015 - entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 100908 102518 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00062 10943 14824 + entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 104852 106102 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00045 22455 26702 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00062 7040 9280 - fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 103892 104848 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 108203 109018 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 106201 107217 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00017 107214 108206 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00062 9523 10725 + fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00053 12960 13564 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 11594 12319 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 8891 11527 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 13987 14583 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 8351 8884 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 7835 8338 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 6913 7824 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00053 12356 12895 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 32621 34642 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 14199 15029 - gspC 100.0 95.3 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 12109 13959 - gspD 100.0 96.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 10616 12109 - gspE 100.0 95.2 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 9417 10616 - gspF 100.0 95.4 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 8921 9376 - gspG 100.0 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 8354 8884 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 7986 8357 - gspI 100.0 94.4 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 7384 7953 - gspJ 100.0 96.0 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 6410 7387 - gspK 100.0 97.4 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 5235 6095 - gspL 100.0 94.7 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 4698 5119 - gspM 99.8 91.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00025 38251 47742 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 47830 53937 - irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 8834 10615 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00055 10616 11563 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00055 11563 13305 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 13302 14623 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 14561 16862 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00042 6403 8079 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 2859 3635 - kpsM 100.0 94.5 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 59575 60627 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00055 748 1061 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00055 1466 1699 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00140 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00055 17794 21693 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00070 5186 6324 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00022 11788 12541 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 10221 11864 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 7706 10231 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 7012 7680 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 6368 6955 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 54128 55087 - ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 34773 36350 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 55254 57056 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 57043 58845 + ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 60146 61450 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 36354 37157 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 37154 38254 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00025 58838 60118 + ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 5703 6293 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID011
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 73372 73677 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 72344 73088 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69669 72251 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69210 69653 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 67972 68457 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 71089 72517 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00011 102874 103329 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 104082 104732 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105151 105567 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105594 106427 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00022 74595 74822 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00022 68659 68832 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00002 150203 150949 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 150949 151806 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 153440 154627 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 169116 169777 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 151820 153430 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 161307 165188 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 155764 157014 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 442080 446327 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 166851 169091 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 154804 155760 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 159115 159930 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 157113 158129 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 158126 159118 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 165406 166608 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 331451 332055 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330085 330810 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 327382 330018 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 332478 333074 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326842 327375 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326326 326829 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 325404 326315 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330847 331386 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 41502 43523 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00036 11815 17922 + irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 8835 10616 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00035 10617 11564 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00035 11564 13306 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 13303 14624 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 14562 16863 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00007 192461 194137 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00015 1055 2107 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00035 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00070 763 1314 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00035 17795 21694 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00047 7702 8840 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00002 461665 462418 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 460098 461741 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 457583 460108 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 456889 457557 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 456245 456832 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 10665 11624 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 43654 45231 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 8696 10498 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 6907 8709 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 4302 5606 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 45235 46038 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 46035 47135 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 5634 6914 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 455580 456170 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID013I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00028 73331 73636 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00028 72345 73089 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00028 69670 72252 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00028 69211 69654 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00028 67973 68458 - afaE-I 100.0 99.6 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00016 71089 72517 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 133106 133561 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 134314 134964 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 135383 135799 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 135826 136659 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00028 74554 74781 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00028 68660 68833 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00001 138992 139738 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 139738 140595 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 142229 143416 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 157905 158566 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 140609 142219 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 150096 153977 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 144553 145803 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 430869 435116 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00001 155640 157880 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 143593 144549 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 147904 148719 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 145902 146918 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 146915 147907 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 154195 155397 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00030 63459 64063 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 62093 62818 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 59390 62026 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 64486 65082 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 58850 59383 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 58334 58837 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 57412 58323 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00030 62855 63394 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 31110 33131 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00019 18010 27501 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 11815 17922 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00045 8222 10003 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00045 10004 10951 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00045 10951 12693 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00045 12690 14011 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00045 13949 16250 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00006 192460 194136 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 203532 204584 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00045 136 449 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00045 854 1087 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00023 87804 88355 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00045 17182 21081 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00056 7770 8908 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00001 450454 451207 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 448887 450530 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 446372 448897 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 445678 446346 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 445034 445621 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00019 10665 11624 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 29402 30979 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 8696 10498 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 6907 8709 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 4302 5606 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 28595 29398 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 27498 28598 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00019 5634 6914 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 444369 444959 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID016I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00031 25409 26837 - aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00070 14346 14840 + chuX 100.0 82.6 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00033 8086 8541 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00378 921 1379 - csgB 100.0 81.7 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00378 2141 2791 + csgD 100.0 83.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00378 2796 3188 + csgE 99.2 82.3 NP_460112 (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00378 3214 3596 + csgF 91.8 80.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00033 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00096 60 893 + csgG 99.8 82.7 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 41965 42706 - entA 99.3 80.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 15743 16489 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00056 42718 43575 - entB 100.0 81.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 16489 17346 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 18980 20167 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 34811 35581 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00056 43589 45199 - entE 99.9 81.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 17360 18970 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 27030 30883 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 21490 22740 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00245 10347 12176 + espL1 96.3 97.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00157 13289 15475 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00114 17615 18668 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 3870 5004 - espR4 99.5 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 63384 64805 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00148 14865 16445 + espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00091 15315 16607 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 24423 25234 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00090 32546 34786 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 20530 21486 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 24841 25656 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00323 4284 5071 + fepC 96.6 80.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 22839 23855 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 23852 24844 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00323 3295 4287 + fepG 100.0 80.2 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00090 31101 32303 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00165 12990 13601 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 15099 15701 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 11624 12349 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 8921 11557 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 14028 14622 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 8381 8914 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 7865 8368 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 6943 7854 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00165 12386 12925 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 49913 50898 - fliG 99.3 80.2 YP_001006742 (fliG) flagellar motor switch protein G [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
contig00015 64916 66937 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00118 6503 7333 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 7573 9423 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 9423 10916 + gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 10916 12115 + gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 12156 12611 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 12648 13177 + gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 13174 13545 + gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 13578 14147 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 14144 15121 + gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 15436 16296 + gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00118 16412 16834 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00015 51816 61307 + irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 45621 51728 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 33235 34275 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00188 3537 4595 - ompA 99.4 86.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00015 44471 45430 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 63208 64785 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 42502 44304 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 40713 42515 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 38108 39412 - ybtS 100.0 99.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 62401 63204 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 61304 62404 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00015 39440 40720 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID017
Contig Start End Strand Gene Coverage Identity Accession Product
contig00001 473529 473984 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 474738 475388 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 475807 476223 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 476250 477083 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99542 100288 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100288 101145 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102779 103966 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118610 119380 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 101159 102769 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110853 114682 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 105289 106539 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 200479 201899 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 39590 41170 + espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 70690 71982 - espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116345 118585 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104329 105285 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108640 109455 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106638 107654 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107651 108643 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114900 116102 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 99695 100297 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 98621 99217 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00017 33893 34723 + gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 34963 36813 + gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 36813 38306 + gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 38306 39505 + gspF 100.0 96.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 39546 40001 + gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 40038 40568 + gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 40565 40936 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 40969 41538 + gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 41535 42512 + gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 42827 43687 + gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00017 43803 44225 + gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 546899 547951 + ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID018CT
Contig Start End Strand Gene Coverage Identity Accession Product
contig00015 49277 50705 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 100619 101074 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 422 1072 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 1491 1907 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 1934 2767 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00021 49253 49999 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 49999 50856 - entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 52490 53677 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 68321 69091 + entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 50870 52480 - entE 100.0 95.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 60540 64393 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 55000 56250 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00054 1 1722 - espL1 90.6 97.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 74779 76200 + espX1 100.0 95.1 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 13174 14466 - espX5 100.0 96.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 66056 68296 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 54040 54996 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 58351 59166 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 56349 57365 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 57362 58354 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 64611 65813 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 59197 59801 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00046 1110 1712 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 57831 58556 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 55128 57764 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00046 36 632 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 54588 55121 - fimF 100.0 97.0 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 54072 54575 - fimG 100.0 97.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 53150 54061 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 58593 59132 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 72820 73860 + ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID019
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 49157 50585 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 6546 7001 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 5141 5791 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 4306 4722 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 3446 4279 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 100946 101692 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 101692 102549 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 104183 105370 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 120014 120784 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 102563 104173 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 112233 116086 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 106693 107943 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 103923 105822 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 25249 26303 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 67116 68251 - espR4 99.6 84.5 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 200923 202344 + espX1 99.9 95.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 73423 75003 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 42631 43923 + espX5 100.0 97.0 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 311902 313899 + espX6 88.1 87.8 NP_290952 (espX6) Type III secretion system effector EspX6 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00029 391 4639 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00011 117749 119989 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 105733 106689 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 110044 110859 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 108042 109058 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 109055 110047 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 116304 117506 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00037 22842 23446 - fimA 99.8 92.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 24943 25545 - fimB 100.0 97.3 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 21476 22201 - fimC 100.0 96.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 18773 21409 - fimD 100.0 96.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 23876 24465 - fimE 98.8 97.1 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 18233 18766 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 17717 18220 - fimG 100.0 96.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 16795 17706 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 22238 22777 - fimI 100.0 97.6 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 103875 104915 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00029 13745 14498 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 12178 13821 + yagW/ecpD 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 9663 12188 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 8969 9637 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 8324 8911 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 7659 8249 + ykgK/ecpR 100.0 96.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID01CT
Contig Start End Strand Gene Coverage Identity Accession Product
contig00032 14815 16243 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00012 10921 11376 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 9516 10166 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 8681 9097 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 7821 8654 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 184844 185590 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 185590 186447 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 188081 189268 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 203912 204682 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 186461 188071 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 196131 199984 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 190591 191841 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00035 15481 17380 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00055 11450 12504 + espR1 83.7 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 129464 130883 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00043 5629 6921 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 90417 91198 - espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 254452 258700 - fdeC 99.9 94.3 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00003 201647 203887 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 189631 190587 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 193942 194757 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 191940 192956 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 192953 193945 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 200202 201404 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00070 12107 12712 - fimA 100.0 95.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00077 6025 6627 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 10742 11467 - fimC 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 8039 10675 - fimD 100.0 98.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00108 206 802 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 7499 8032 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 6983 7486 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 6061 6972 - fimH 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 11504 12042 - fimI 99.8 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 80289 80651 + gtrA 100.0 86.8 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00019 80648 81552 + gtrB 97.2 81.6 NP_706258 (gtrB) bactoprenol glucosyl transferase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00011 93242 94282 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 268020 268773 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 266453 268096 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 263938 266463 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 263244 263912 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 262599 263186 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 261934 262524 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID021
Contig Start End Strand Gene Coverage Identity Accession Product
contig00019 49272 50700 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00018 6471 6926 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 5066 5716 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 4231 4647 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 3371 4204 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 99821 100678 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 66391 68290 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 37583 39769 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 25291 26425 - espR4 99.5 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 69186 70607 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 7787 9367 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 31385 32677 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 108757 109568 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 17762 22010 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00016 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00039 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 27347 27949 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 26276 26870 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 86337 88358 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 122285 123115 - gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 120195 122045 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 118702 120195 - gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 117503 118702 - gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 117007 117462 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 116441 116970 - gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 116073 116444 - gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 115471 116040 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 114497 115474 - gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 113322 114182 - gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 112784 113206 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 73237 82728 + irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 67042 73149 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 145353 146393 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 65892 66851 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 84629 86206 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 63923 65725 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 62134 63936 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 59529 60833 - ybtS 100.0 99.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 83822 84625 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 82725 83825 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 60861 62141 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00045 25032 25622 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID027
Contig Start End Strand Gene Coverage Identity Accession Product
contig00002 55091 55279 + afaF-VII 100.0 98.4 AAK16195 (afaF-VII) AfaF-VII [Afimbrial adhesin AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]
contig00024 49071 50499 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00019 97680 97796 - astA 100.0 95.7 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00090 767 883 + astA 100.0 100.0 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00016 8085 8540 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 6680 7330 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 5845 6261 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 4985 5818 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 99305 100051 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 100051 100908 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 102542 103729 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 118373 119143 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 100922 102532 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 110592 114445 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 105052 106302 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 75100 76999 - espL1 100.0 97.4 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 120641 122827 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 25250 26304 + espR1 83.7 94.0 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 203533 204954 + espX1 100.0 95.8 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 90845 92425 - espX4 99.9 93.4 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 60054 61346 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 164471 165267 - espY1 99.9 88.7 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 204591 208839 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00015 116108 118348 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 104092 105048 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 108403 109218 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 106401 107417 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 107414 108406 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 114663 115865 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00048 11895 12499 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 13997 14599 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 10529 11254 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 7826 10462 - fimD 100.0 98.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 12923 13519 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 7286 7819 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 6770 7273 - fimG 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 5848 6759 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00048 11291 11830 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00029 42042 44063 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 82007 82837 - gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 79917 81767 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 78424 79917 - gspE 100.0 97.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 77225 78424 - gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 76729 77184 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 76162 76692 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 75794 76165 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 75192 75761 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 74218 75195 - gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 73043 73903 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 72505 72927 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00029 28942 38433 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 22747 28854 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00050 7016 8803 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00050 8804 9751 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00050 9751 11493 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00050 11490 12811 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00050 12749 15050 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 21025 22065 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 217946 218699 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 216379 218022 + yagW/ecpD 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 213864 216389 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 213170 213838 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 212525 213112 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 21597 22556 + ybtA 100.0 99.6 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 40334 41911 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 19628 21430 - ybtP 100.0 99.5 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 17839 19641 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 15234 16538 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 39527 40330 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 38430 39530 + ybtU 100.0 99.8 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 16566 17846 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 211860 212450 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID031
Contig Start End Strand Gene Coverage Identity Accession Product
contig00135 1568 1873 - afaA 100.0 99.7 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00136 1552 1857 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00135 554 1298 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00136 554 1298 - afaB-I 100.0 99.1 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00091 7237 7680 - afaD 100.0 94.4 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00027 16578 18006 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 93711 94166 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 94921 95571 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 95990 96406 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 96433 97266 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00087 2131 2358 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00152 383 610 + daaF 100.0 98.7 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00008 118802 119245 - draD 100.0 100.0 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00008 118250 118423 - draP 100.0 100.0 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00091 6656 6829 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00021 53688 54434 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 54434 55291 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 56925 58112 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 72756 73526 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 55305 56915 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 64975 68828 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 59435 60685 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 7950 9849 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 28677 30257 + espX4 100.0 96.5 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00043 23183 24475 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 90777 91410 - espY1 84.2 92.9 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00029 46313 50561 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00021 70491 72731 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 58475 59431 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 62786 63601 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 60784 61800 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 61797 62789 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00021 69046 70248 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00055 7903 9924 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 5111 11218 - irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00065 7462 9249 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 9250 10197 + iucB 100.0 95.8 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 10197 11939 + iucC 100.0 96.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 11936 13257 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 13195 15496 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00032 16892 17932 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00137 441 754 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00160 21 560 + papE 99.4 93.9 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00137 1159 1392 + papI 100.0 95.3 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00128 2675 3226 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00065 16429 20328 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00031 6127 6880 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 4560 6203 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 2045 4570 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 1351 2019 + yagY/ecpB 100.0 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 706 1293 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00033 11409 12368 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 6194 7771 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 12535 14337 + ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 14324 16126 + ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 17427 18731 + ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 5387 6190 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 4290 5390 + ybtU 100.0 99.5 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 16119 17399 + ybtX 100.0 99.8 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 41 631 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID034I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 49065 50493 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 8267 8722 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 6862 7512 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 6027 6443 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 5167 6000 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 99076 99822 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 99822 100679 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 102313 103500 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 118144 118914 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 100693 102303 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 110363 114216 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 104823 106073 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 295113 297012 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 7233 9419 - espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 54129 55264 + espR4 99.6 84.5 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 144216 145637 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 37635 39215 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 68714 70006 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 105289 106070 - espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 204827 209075 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00016 115879 118119 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 103863 104819 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 108174 108989 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 106172 107188 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 107185 108177 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 114434 115636 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00038 34579 35190 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 1423 2025 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 33213 33938 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 30510 33146 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 352 946 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 29970 30503 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 29454 29957 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 28532 29443 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 33975 34514 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 103766 104806 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 218183 218936 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 216616 218259 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 214101 216626 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 213407 214075 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 212762 213349 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 212097 212687 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID041
Contig Start End Strand Gene Coverage Identity Accession Product
contig00040 19968 20318 + aap/aspU 100.0 96.6 YP_006099176 (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042]
contig00024 51586 53014 + aslA 100.0 96.8 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00040 20752 20868 - astA 100.0 96.6 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00050 5097 5213 + astA 100.0 98.3 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00014 61352 62380 + chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00014 54196 55188 - chuU 100.0 96.3 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00014 53429 54229 - chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00014 56367 57704 - chuW 100.0 96.6 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00014 55237 55860 - chuY 100.0 96.8 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 123498 123953 - csgB 99.8 83.4 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 124708 125358 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 125777 126193 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 126220 127053 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 84772 85518 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 85518 86375 - entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 88009 89196 - entC 100.0 97.2 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 103654 104424 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 86389 87999 - entE 100.0 96.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 95873 99726 - entF 99.3 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 90333 91583 - entS 100.0 96.2 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 252538 254436 - espL1 100.0 96.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 87664 89850 + espL4 100.0 96.5 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 14559 15811 - espR1 99.4 93.9 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 201632 203053 + espX1 100.0 96.1 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 89264 91276 - espX2 100.0 96.5 NP_286562 (espX2) Type III secretion system effector EspX2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 53905 55485 - espX4 100.0 96.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 23110 24402 + espX5 100.0 96.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 162205 162933 - espY1 96.8 93.3 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 145158 145727 - espY2 100.0 93.9 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 5678 7249 - espY3 100.0 95.8 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 184296 186704 - espY4 100.0 93.0 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 96670 100920 - fdeC 100.0 95.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00011 101389 103629 + fepA 100.0 97.1 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 89373 90329 + fepB 100.0 97.1 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 93684 94499 + fepC 100.0 96.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 91682 92698 + fepD 100.0 96.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 92695 93687 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 99944 101146 - fes 100.0 96.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00010 122297 122902 - fimA 100.0 90.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 124400 125003 - fimB 100.0 97.5 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 120931 121656 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 118228 120864 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 123326 123922 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 117688 118221 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 117172 117675 - fimG 100.0 99.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 116250 117161 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 121693 122232 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 57571 58401 + gspC 100.0 95.4 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 58641 60491 + gspD 100.0 96.7 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 60491 61984 + gspE 100.0 95.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 61984 63183 + gspF 100.0 94.7 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 63224 63679 + gspG 100.0 96.7 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 63716 64246 + gspH 100.0 96.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 64243 64614 + gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 64647 65216 + gspJ 100.0 94.6 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 65213 66190 + gspK 100.0 97.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 66505 67365 + gspL 100.0 95.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 67481 67902 + gspM 99.8 97.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 81054 82730 - kpsD 100.0 99.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 68960 69736 + kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 69733 70392 + kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00023 58746 59798 - ompA 100.0 95.7 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00014 59321 61303 + shuA 100.0 98.6 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00014 57724 58716 - shuT 100.0 98.0 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00014 55860 56354 - shuX 100.0 96.2 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00008 116324 117077 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00008 114757 116400 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00008 112242 114767 + yagX/ecpC 100.0 98.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00008 111548 112216 + yagY/ecpB 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00008 110904 111491 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00008 110239 110829 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID043I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00032 8086 8541 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00023 48009 48755 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 48755 49612 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 51246 52433 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 67077 67847 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 49626 51236 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 59296 63149 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 53756 55006 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 19954 21853 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00051 19363 21549 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 25445 26498 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 203174 204595 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 8865 10445 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 164219 165030 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 204931 209179 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00023 64812 67052 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 52796 53752 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 57107 57922 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 55105 56121 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 56118 57110 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00023 63367 64569 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00044 28795 29400 - fimA 100.0 92.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 30899 31501 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 27429 28154 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 24726 27362 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 29825 30421 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 24186 24719 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 23670 24173 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 22748 23659 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00044 28191 28730 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00020 41806 43827 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 28706 38197 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 22511 28618 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00065 7017 8804 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 8805 9752 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 9752 11494 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00007 103863 104903 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 218286 219039 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 216719 218362 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 214204 216729 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 213510 214178 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 212865 213452 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 21361 22320 + ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 40098 41675 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 19392 21194 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 17603 19405 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 14998 16302 - ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 39291 40094 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 38194 39294 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 16330 17610 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 212200 212790 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID044
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 14725 16153 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00026 8086 8541 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00026 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00026 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00026 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 99161 99907 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 99907 100764 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 102398 103585 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 118229 118999 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 100778 102388 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 110448 114301 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 104908 106158 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00066 261 2159 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 37583 39769 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 23235 24288 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 50497 51918 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 7787 9367 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 31391 32683 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 90068 90849 + espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00028 41455 45703 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00008 115964 118204 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 103948 104904 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 108259 109074 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 106257 107273 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 107270 108262 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 114519 115721 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00072 8955 9566 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 11064 11666 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 7589 8314 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 4886 7522 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 9993 10587 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 4346 4879 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 3830 4333 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 2908 3819 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00072 8351 8890 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00049 26629 28650 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00039 16563 17393 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 17633 19483 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 19483 20976 + gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 20976 22175 + gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 22216 22671 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 22708 23237 + gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 23234 23605 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 23638 24207 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 24204 25181 + gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 25496 26356 + gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00039 26472 26894 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00049 13529 23020 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 7334 13441 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00114 1 1462 + iucA 81.8 94.1 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00114 1463 2410 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00114 2410 4152 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00001 145352 146392 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00070 5439 6192 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00070 3872 5515 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00070 1357 3882 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00070 663 1331 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00070 18 605 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00049 6184 7143 + ybtA 100.0 99.8 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 24921 26498 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 4215 6017 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 2426 4228 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 1 1125 - ybtS 86.2 97.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 24114 24917 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 23017 24117 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00049 1153 2433 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 48725 49315 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID046II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00114 2881 4309 + aslA 100.0 97.3 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00775 147 602 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00775 1357 2007 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00590 296 712 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00590 739 1572 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00284 2608 3465 + entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00291 2608 3465 + entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00284 1 974 + entC 82.0 97.0 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00291 1 974 + entC 82.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00301 106 876 - entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00284 984 2594 + entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00291 984 2594 + entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00539 1515 2684 - entS 93.5 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00875 766 1935 - entS 93.5 95.1 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00301 901 3141 - fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00539 555 1511 + fepB 100.0 97.0 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00203 1616 2431 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00203 3417 4433 - fepD 100.0 96.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01996 1 872 + fepD 85.7 95.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00203 2428 3420 - fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00210 3884 4489 - fimA 100.0 90.3 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00026 1253 1855 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00210 2518 3243 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00210 1 2451 - fimD 93.0 97.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00026 179 775 - fimE 100.0 99.0 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01077 1 429 + fimF 80.3 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01079 1 429 + fimF 80.3 97.2 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01077 442 945 + fimG 100.0 97.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01079 442 945 + fimG 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00210 3280 3819 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 31335 32165 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 32405 34255 + gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 34255 35748 + gspE 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 35748 36947 + gspF 100.0 96.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 36988 37443 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 37480 38010 + gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 38007 38378 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01244 1153 1452 - gspI 80.7 94.3 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 38411 38980 + gspJ 100.0 96.5 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01244 551 1120 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01483 742 1164 + gspM 100.0 94.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02105 464 805 - gspM 80.8 97.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00096 175 537 + gtrA 100.0 90.4 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig01309 471 1385 - ompA 86.7 94.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00011 17098 17851 + yagV/ecpE 99.7 97.3 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 15531 17174 + yagW/ecpD 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 13016 15541 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 12322 12990 + yagY/ecpB 100.0 97.6 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 11677 12264 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 11012 11602 + ykgK/ecpR 100.0 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID049
Contig Start End Strand Gene Coverage Identity Accession Product
contig00090 5232 5976 - afaB-I 100.0 98.2 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00090 2557 5139 - afaC-I 100.0 99.0 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00014 49394 50822 + aslA 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 22899 23354 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 21494 22144 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 20659 21075 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 19799 20632 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00090 7338 7565 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00090 6230 6535 - draA 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00090 2098 2541 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00090 800 1359 - draE2 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00090 1546 1719 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00024 47219 47965 - entA 100.0 95.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 47965 48822 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 50456 51643 - entC 100.0 97.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 66287 67057 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 48836 50446 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 58506 62359 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 52966 54216 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00030 18433 20332 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 50708 51762 + espR1 83.7 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 131705 133127 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 27956 29536 + espX4 100.0 96.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 59040 60332 - espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00070 15813 20061 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00024 64022 66262 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 52006 52962 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 56317 57132 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 54315 55331 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 55328 56320 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00024 62577 63779 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00034 24982 25586 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 27084 27686 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 23616 24341 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 20913 23549 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 26010 26606 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 20373 20906 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 19857 20360 - fimG 100.0 97.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 18935 19846 - fimH 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 24378 24917 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00102 7917 9938 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 9962 10792 - gspC 100.0 95.4 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 7872 9722 - gspD 100.0 95.5 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 6379 7872 - gspE 100.0 96.4 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 5180 6379 - gspF 100.0 95.4 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 4684 5139 - gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 4117 4647 - gspH 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 3749 4120 - gspI 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 3147 3716 - gspJ 100.0 94.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 2173 3150 - gspK 100.0 97.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 998 1858 - gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 460 882 - gspM 100.0 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00056 17866 23973 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00085 7311 9098 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00085 9099 10046 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00085 10046 11788 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00085 11785 13106 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00085 13044 15345 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00039 15985 17025 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00142 957 1508 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00056 16716 17675 + ybtA 100.0 99.7 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00102 6209 7786 + ybtE 100.0 99.7 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 14747 16549 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 12958 14760 - ybtQ 100.0 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 10353 11657 - ybtS 100.0 97.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00102 5402 6205 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00102 4305 5405 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00056 11685 12965 - ybtX 100.0 97.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID051
Contig Start End Strand Gene Coverage Identity Accession Product
contig00023 73361 73666 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00023 72326 73070 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00023 69651 72233 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00023 69192 69635 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00023 67954 68439 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00019 71053 72481 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 16900 18846 + chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 18895 19923 + chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 15266 16258 - chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 11738 12730 - chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 10971 11771 - chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 13909 15246 - chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 13402 13896 - chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00028 12779 13402 - chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 133806 134261 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00009 135014 135664 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00009 136083 136499 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00009 136526 137359 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00023 74584 74811 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00023 68641 68814 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00002 281539 282285 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 282285 283142 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 284776 285963 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 300452 301113 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 283156 284766 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 292643 296524 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 287100 288350 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00006 228839 233086 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 298187 300427 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 286140 287096 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 290451 291266 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 288449 289465 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 289462 290454 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 296742 297944 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 331496 332100 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330130 330855 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 327427 330063 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 332523 333119 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326887 327420 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326371 326874 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 325449 326360 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330892 331431 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00033 7952 9973 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00008 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00036 11815 17922 + irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 8835 10616 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00035 10617 11564 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00035 11564 13306 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 13303 14624 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 14562 16863 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00008 192461 194137 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 1055 2107 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00035 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00074 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00035 17795 21694 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00047 8392 9530 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00006 248424 249177 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 246857 248500 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 244342 246867 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 243648 244316 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 243004 243591 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00036 10665 11624 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 6244 7821 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 8696 10498 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 6907 8709 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 4302 5606 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 5437 6240 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 4340 5440 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00036 5634 6914 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 242339 242929 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID054
Contig Start End Strand Gene Coverage Identity Accession Product
contig00014 107924 108379 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 109133 109783 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 110202 110618 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 110645 111478 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99574 100320 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100320 101177 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102811 103998 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118642 119412 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 101191 102801 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110885 114714 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 105321 106571 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 200479 201899 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 55541 57121 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 24730 26022 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 116377 118617 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104361 105317 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108672 109487 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106670 107686 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107683 108675 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114932 116134 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00015 107592 108196 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00032 39377 39979 + fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 106220 106945 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 103517 106153 - fimD 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00032 40457 41053 + fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 102977 103510 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 102461 102964 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 101539 102450 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 106988 107527 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 382695 383525 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 380605 382455 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 379112 380605 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 377913 379112 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 377417 377872 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 376850 377380 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 376482 376853 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 375880 376449 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 374906 375883 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 373731 374591 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 373193 373615 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 104181 105233 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 54824 56467 + yagW/ecpD 100.0 98.5 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID057
Contig Start End Strand Gene Coverage Identity Accession Product
contig00010 164910 165215 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00010 163896 164640 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00010 161221 163803 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00010 160762 161205 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00010 159524 160009 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00015 97772 98227 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00068 615 1031 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00068 1058 1891 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 166133 166360 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00010 160211 160384 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00006 212521 213267 + entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 211664 212521 + entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 208843 210030 + entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 193429 194199 - entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 210040 211650 + entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 198127 201956 + entF 98.7 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 206270 207520 + entS 100.0 95.5 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00011 70920 72789 - espL1 98.5 95.2 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 25977 27031 + espR1 83.7 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 127832 129252 + espX1 99.9 94.6 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 26196 27776 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 5440 6732 - espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 71577 75825 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00006 194224 196464 - fepA 100.0 97.5 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 207524 208480 - fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 203354 204169 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 205155 206171 - fepD 100.0 96.4 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 204166 205158 - fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 196707 197909 + fes 100.0 96.3 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 244087 244692 - fimA 100.0 90.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 246190 246792 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 242721 243446 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 240018 242654 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 245116 245712 - fimE 100.0 99.0 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 239478 240011 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 238962 239465 - fimG 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 238040 238951 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 243483 244022 - fimI 100.0 98.9 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00023 40394 42415 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 133759 134736 - gspK 100.0 97.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 132584 133444 - gspL 100.0 96.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 132046 132468 - gspM 100.0 97.2 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00023 27293 36784 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 21098 27205 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00051 7017 8804 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00051 8805 9752 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00051 9752 11494 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00051 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00051 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00003 186194 187246 - ompA 100.0 94.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00062 7729 8867 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00013 84931 85684 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 83364 85007 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 80849 83374 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 80155 80823 + yagY/ecpB 100.0 98.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 79510 80097 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00023 19948 20907 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 38685 40262 + ybtE 100.0 99.6 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 17979 19781 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 16190 17992 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 13585 14889 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 37878 38681 + ybtT 100.0 99.4 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 36781 37881 + ybtU 100.0 99.5 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 14917 16197 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00013 78845 79435 + ykgK/ecpR 100.0 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID066II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00207 4654 6082 + aslA 100.0 93.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00739 348 1776 + aslA 100.0 98.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00099 8505 10451 + chuA 100.0 99.7 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 10500 11528 + chuS 100.0 99.5 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 6871 7863 - chuT 100.0 99.7 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 3343 4335 - chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 2576 3376 - chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 5514 6851 - chuW 100.0 99.1 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 5007 5501 - chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00099 4384 5007 - chuY 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig01740 686 1141 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01814 618 1180 + csgD 86.5 80.5 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01707 1 690 + csgG 82.7 84.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01985 1 690 + csgG 82.7 83.8 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00501 3489 4235 + entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00502 3489 4235 + entA 100.0 98.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00501 2632 3489 + entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00502 2632 3489 + entB 100.0 99.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00501 1 998 + entC 84.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00502 1 998 + entC 84.0 99.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00727 310 971 + entD 85.9 92.8 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01613 105 875 - entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00501 1008 2618 + entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00502 1008 2618 + entE 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 3351 7204 + entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 11494 12744 + entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00230 5881 7131 + entS 100.0 98.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00742 928 2827 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00029 9625 11811 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00209 5270 6323 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00243 904 2325 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00730 1207 2499 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00746 1257 2053 + espY1 99.9 88.8 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 2476 6724 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00063 12748 13704 - fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00230 7135 8000 - fepB 90.5 99.8 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 8578 9393 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00230 2965 3780 - fepC 100.0 99.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 10379 11395 - fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00230 4766 5782 - fepD 100.0 99.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 9390 10382 - fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00230 3777 4769 - fepG 100.0 99.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 1931 3133 + fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00462 1931 3133 + fes 100.0 99.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00194 7831 8436 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00920 940 1542 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 6465 7190 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 3762 6398 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00920 2020 2616 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 3222 3755 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 2706 3209 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 1784 2695 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00194 7227 7766 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 26915 28936 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00033 14378 15208 - gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 12288 14138 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 10795 12288 - gspE 100.0 94.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 9596 10795 - gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 9100 9555 - gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 8533 9063 - gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 8165 8536 - gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 7563 8132 - gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 6589 7566 - gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 5414 6274 - gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00033 4877 5298 - gspM 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 13815 23306 + irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 7621 13725 + irp2 100.0 98.9 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00111 1259 2596 + iucD 100.0 99.9 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00152 1259 2580 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00111 2518 4797 + iutA 100.0 99.7 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00152 2518 4819 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00162 4502 6178 - kpsD 100.0 99.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00033 3041 3817 - kpsM 100.0 99.9 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00033 2385 3044 - kpsT 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00334 1178 2218 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig02092 1 894 + ompA 85.9 99.4 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00211 747 1060 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00211 1465 1698 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01745 255 806 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00152 5754 9654 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00131 8438 9576 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00110 354 4485 + vat 100.0 99.7 NP_752330 (vat) Haemoglobin protease [Tsh (VF0233)] [Escherichia coli CFT073]
contig00031 15831 16584 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00509 625 1378 + yagV/ecpE 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 14264 15907 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 11749 14274 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00875 1 2293 + yagX/ecpC 90.8 97.4 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 11055 11723 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00065 13581 14188 + yagY/ecpB 90.9 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 10410 10997 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00065 12937 13524 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 6471 7430 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 25207 26784 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 4502 6304 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 2713 4515 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 108 1412 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 24400 25203 + ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 23303 24403 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 1440 2720 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00031 9745 10335 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00065 12272 12862 + ykgK/ecpR 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID067
Contig Start End Strand Gene Coverage Identity Accession Product
contig00075 1130 1585 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00075 2340 2990 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00075 3409 3825 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00075 3852 4685 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 73488 74234 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 74234 75091 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 76725 77912 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 92556 93326 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 75105 76715 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 84775 88628 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 79235 80485 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00028 44763 45818 + espR1 83.8 94.0 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 202051 203471 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 56912 58491 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 26120 27412 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 90291 92531 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 78275 79231 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 82586 83401 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 80584 81600 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 81597 82589 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 88846 90048 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00017 91291 91824 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00017 90775 91278 - fimG 100.0 97.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00017 89853 90764 - fimH 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 82761 83291 - gspH 100.0 97.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 82393 82764 - gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 81791 82360 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 80817 81794 - gspK 100.0 98.2 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 79642 80502 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 79104 79526 - gspM 100.0 94.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00076 1510 1872 + gtrA 100.0 90.4 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00009 103199 104239 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID068
Contig Start End Strand Gene Coverage Identity Accession Product
contig00021 49065 50493 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 8083 8538 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 6678 7328 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 5843 6259 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 4983 5816 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99274 100020 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100020 100877 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102511 103698 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118342 119112 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100891 102501 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110561 114414 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 105021 106271 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 251616 253515 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 91936 94122 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00037 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 45175 46310 + espR4 99.6 84.5 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 144166 145587 + espX1 100.0 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 62140 63720 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 31350 32641 + espX5 99.9 97.0 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 105277 106058 - espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 116077 118317 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104061 105017 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108372 109187 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106370 107386 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107383 108375 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114632 115834 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00006 103766 104806 - ompA 100.0 98.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00031 5924 6677 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 4357 6000 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 1842 4367 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 1148 1816 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 503 1090 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID073I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00056 14045 14500 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 15255 15905 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 16324 16740 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00056 16767 17600 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 73616 74362 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 74362 75219 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 76853 78040 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 92684 93454 + entD 100.0 94.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 75233 76843 - entE 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 84903 88756 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 79363 80613 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00011 70946 72001 + espR1 83.8 94.0 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 201882 203302 + espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 56912 58492 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 26120 27412 + espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 90419 92659 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 78403 79359 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 82714 83529 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 80712 81728 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 81725 82717 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 88974 90176 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00016 89982 90515 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 89466 89969 - fimG 100.0 97.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 88544 89455 - fimH 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00024 16594 17124 - gspH 100.0 97.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 16226 16597 - gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 15624 16193 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 14650 15627 - gspK 100.0 98.2 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 13475 14335 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00024 12937 13359 - gspM 100.0 94.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 73598 74638 + ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ID077
Contig Start End Strand Gene Coverage Identity Accession Product
contig00003 178149 178604 + csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 176745 177395 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 175910 176326 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 175050 175883 - csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 99458 100204 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 100204 101061 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 102695 103882 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 118526 119296 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 101075 102685 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 110769 114598 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 105205 106455 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 94169 96037 + espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 142352 143772 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 55500 57080 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 24689 25981 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00006 116261 118501 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 104245 105201 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 108556 109371 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 106554 107570 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 107567 108559 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 114816 116018 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00016 107592 108196 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 39377 39979 + fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106220 106945 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 103517 106153 - fimD 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 40457 41053 + fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102977 103510 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102461 102964 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 101539 102450 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106988 107527 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 319119 319949 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 317029 318879 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 315536 317029 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 314337 315536 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 313841 314296 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 313274 313804 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 312906 313277 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 312304 312873 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 311330 312307 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 310155 311015 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 309617 310039 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 104182 105234 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00015 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00015 54824 56467 + yagW/ecpD 100.0 98.5 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00015 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00015 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00015 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00015 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID081I
Contig Start End Strand Gene Coverage Identity Accession Product
contig00073 1312 1767 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00073 2522 3172 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00073 3591 4007 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00073 4034 4867 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 188935 189681 - entA 100.0 96.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 189681 190538 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 192172 193359 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 208003 208773 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 190552 192162 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 200222 204075 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 194682 195932 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00007 53659 55558 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 51792 53372 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 20999 22291 + espX5 100.0 98.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00038 3583 7831 + fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 205738 207978 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 193722 194678 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 198033 198848 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 196031 197047 + fepD 100.0 95.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 197044 198036 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 204293 205495 - fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00054 19054 19965 - fimH 100.0 97.2 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00014 73515 75536 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 209199 210029 - gspC 100.0 95.3 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 207109 208959 - gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 205692 207109 - gspE 94.9 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 60415 69906 + irp1 100.0 99.9 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 54220 60327 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 124013 125053 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00014 53070 54029 + ybtA 100.0 99.8 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 71807 73384 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 51101 52903 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 49312 51114 - ybtQ 100.0 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 46707 48011 - ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 71000 71803 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 69903 71003 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 48039 49319 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 1 563 - ykgK/ecpR 95.3 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID086II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 73361 73666 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 72326 73070 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69651 72233 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69192 69635 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 67954 68439 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 71053 72481 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00029 16900 18846 + chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 18895 19923 + chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 15266 16258 - chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 11738 12730 - chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 10971 11771 - chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 13909 15246 - chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 13402 13896 - chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 12779 13402 - chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 102918 103373 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 104126 104776 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 105195 105611 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 105638 106471 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00022 74584 74811 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00022 68641 68814 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00001 281532 282278 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 282278 283135 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 284769 285956 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 300445 301106 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 283149 284759 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 292636 296517 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 287093 288343 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 573409 577656 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00001 298180 300420 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 286133 287089 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 290444 291259 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 288442 289458 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 289455 290447 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 296735 297937 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 331496 332100 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330130 330855 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 327427 330063 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 332523 333119 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326887 327420 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 326371 326874 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 325449 326360 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 330892 331431 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00028 31110 33131 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 18010 27501 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 11815 17922 + irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 8835 10616 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00037 10617 11564 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00037 11564 13306 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00037 13303 14624 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00037 14562 16863 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00007 192461 194137 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00015 1055 2107 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00037 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00037 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00073 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00037 17795 21694 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00048 8392 9530 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00001 592994 593747 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 591427 593070 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 588912 591437 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 588218 588886 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 587574 588161 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00028 10665 11624 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 29402 30979 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 8696 10498 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 6907 8709 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 4302 5606 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 28595 29398 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 27498 28598 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 5634 6914 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 586909 587499 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID088
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00032 40480 40935 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 41690 42340 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 42759 43175 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 43202 44035 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 99570 100316 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 100316 101173 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 102807 103994 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 118638 119408 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 101187 102797 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 110857 114710 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 105317 106567 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00048 18427 20325 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00047 19357 21543 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00038 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 48323 49458 - espR4 99.6 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 203426 204847 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 164241 165821 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00008 133450 134742 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 164472 165283 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 204341 208589 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00011 116373 118613 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 104357 105313 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 108668 109483 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 106666 107682 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 107679 108671 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 114928 116130 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 39622 41643 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 45252 54743 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 54831 60938 - irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00053 7015 8802 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 8803 9750 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 9750 11492 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 11489 12810 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 12748 15049 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00001 286346 287386 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00002 217696 218449 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 216129 217772 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 213614 216139 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 212920 213588 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 212275 212862 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 61129 62088 - ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 41774 43351 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 62255 64057 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 64044 65846 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 67147 68451 + ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 43355 44158 - ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 44155 45255 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 65839 67119 + ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00002 211610 212200 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID092
Contig Start End Strand Gene Coverage Identity Accession Product
contig01686 962 1267 - afaA 100.0 99.7 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig01686 1 692 - afaB-I 93.0 100.0 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00659 1597 4179 - afaC-I 100.0 99.2 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00659 1 391 - afaE-V 81.0 98.2 CAA62863 (afaE-V) AfaE-V adhesin [Afimbrial adhesin AFA-V (AI013)] [Escherichia coli str. AL 851]
contig00811 409 1837 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00207 464 1492 - chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00207 4129 5121 + chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00207 7657 8649 + chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00207 8616 9416 + chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00207 5141 6478 + chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00207 6985 7608 + chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00168 3391 6435 + cnf1 100.0 99.9 CAA50007 (cnf1) cytotoxic necrotizing factor 1 [CNF-1 (VF0240)] [Escherichia coli str. E-B35]
contig01217 1864 2319 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01217 460 1110 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01501 10 717 + csgG 84.9 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00172 436 663 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00659 1138 1581 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00659 593 766 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig01371 804 1550 + entA 100.0 95.8 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01371 1 804 + entB 93.7 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00183 3542 4312 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig02241 1 698 + entD 90.5 93.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01387 397 2007 + entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00600 705 4534 - entF 98.7 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01377 1035 2072 - entS 83.0 95.1 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig02345 2 1008 - entS 80.5 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00208 3822 5720 - espL1 100.0 95.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 10632 11740 - espR4 97.2 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00897 580 2001 + espX1 100.0 94.8 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00798 1614 3194 - espX4 100.0 93.5 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00318 4757 6050 + espX5 100.0 95.8 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01434 355 1103 + espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01942 709 1278 - espY2 100.0 94.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01030 1 2139 + espY4 88.6 88.2 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00290 968 5193 + fdeC 99.4 90.9 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00183 1277 3517 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01377 75 1031 + fepB 100.0 97.3 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00871 1898 2713 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00871 1 912 + fepD 89.7 95.9 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00871 909 1901 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00183 1 1034 - fes 86.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00901 1004 1606 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00658 2529 3254 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00658 1 2462 - fimD 93.4 98.2 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00901 2084 2680 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig02603 186 719 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00640 1 803 + fimH 88.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00658 3291 3830 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00741 1016 1846 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00741 2086 3905 + gspD 98.3 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 6065 7558 - gspE 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 4866 6065 - gspF 100.0 96.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01633 474 1673 + gspF 100.0 94.5 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 4370 4825 - gspG 100.0 95.4 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 3803 4333 - gspH 100.0 96.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01766 608 1138 - gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 3435 3806 - gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01766 240 611 - gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 2833 3402 - gspJ 100.0 96.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 1859 2836 - gspK 100.0 97.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 684 1544 - gspL 100.0 98.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01787 120 980 + gspL 100.0 95.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00305 146 568 - gspM 100.0 97.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01787 1096 1466 + gspM 87.7 97.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00206 1 2993 - hlyA 97.3 98.6 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00206 3005 3679 - hlyC 100.0 100.0 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00168 1009 2445 + hlyD 100.0 99.9 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00211 975 2762 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00211 2763 3710 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00211 3710 5452 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00211 5449 6770 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00211 6708 9009 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00229 2653 4329 + kpsD 100.0 97.9 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00278 3236 4288 - ompA 100.0 94.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00132 3982 4296 - papB 100.0 99.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00132 1 2523 - papC 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 1609 2148 + papE 100.0 100.0 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 2193 2723 + papF 100.0 100.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 2767 3777 + papG 100.0 99.1 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00132 2570 3157 - papH 100.0 98.0 NP_755466 (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00132 4701 4934 + papI 100.0 94.0 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 473 1054 + papJ 100.0 98.6 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 1061 1600 + papK 100.0 99.3 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00551 4040 4591 + papX 100.0 97.3 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00207 1541 3523 - shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00207 6491 6985 + shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00107 12691 13403 - yagV/ecpE 94.3 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01628 1 713 + yagV/ecpE 94.3 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00681 454 2979 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00883 2640 3227 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00736 2372 3331 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00948 156 959 - ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00948 956 2056 - ybtU 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00883 1975 2565 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID094LLFII
Contig Start End Strand Gene Coverage Identity Accession Product
contig00039 5109 5853 - afaB-I 100.0 98.2 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00039 2434 5016 - afaC-I 100.0 99.0 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00517 402 1830 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 8814 9842 - chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 16005 16997 + chuU 100.0 96.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 16964 17764 + chuV 100.0 98.2 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 13489 14826 + chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 15333 15956 + chuY 100.0 96.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig01202 1 413 - csgB 90.3 83.3 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00902 920 1336 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00039 7222 7449 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00039 6114 6419 - draA 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00039 1975 2418 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00039 677 1236 - draE2 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00039 1423 1596 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00807 675 1421 + entA 100.0 97.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00222 543 1730 - entC 100.0 97.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00329 2044 2814 - entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01258 324 1094 - entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00142 1552 5405 + entF 99.3 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00222 2867 4117 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00201 1146 3332 + espL4 100.0 97.4 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00030 7753 9005 + espR1 99.4 94.3 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00983 1 1012 - espR1 80.3 94.0 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00054 8558 9666 - espR4 97.2 84.7 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00252 405 1826 + espX1 100.0 96.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00229 3940 5520 + espX4 100.0 95.8 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00052 6090 7382 - espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00490 1828 2576 + espY1 99.5 95.8 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 15490 16059 + espY2 100.0 94.6 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00120 4625 6196 + espY3 100.0 95.5 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00110 5547 7955 + espY4 100.0 96.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00038 7724 11974 + fdeC 100.0 95.1 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00222 1907 2863 + fepB 100.0 97.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00142 6779 7594 - fepC 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00222 4216 5232 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00142 132 1334 + fes 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01951 2 495 + fimG 98.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00575 3 801 + fliG 80.5 80.5 YP_001006742 (fliG) flagellar motor switch protein G [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
contig00003 31711 33732 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 7311 8141 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 8381 10231 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 10231 11724 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 11724 12923 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 12964 13419 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 13456 13986 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 13983 14354 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 14387 14956 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 14953 15930 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 16245 17105 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 17221 17642 + gspM 99.8 92.7 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00012 15965 17194 + iroD 100.0 99.7 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00012 17279 18238 + iroE 100.0 98.7 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00003 18611 28102 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 12416 18523 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00035 7001 8788 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 8789 9736 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 9736 11478 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 11475 12796 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00035 12734 15035 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00004 32363 34039 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 18701 19477 + kpsM 100.0 94.8 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00140 3426 4478 - ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00792 958 1509 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00022 9891 11873 - shuA 100.0 98.5 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00022 12478 13469 + shuT 99.9 98.0 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00022 14839 15333 + shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00011 614 1367 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00363 2662 3330 + yagY/ecpB 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00363 2018 2605 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig02264 65 566 + yagZ/ecpA 85.4 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 11265 12224 + ybtA 100.0 99.4 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 30003 31580 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 9296 11098 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 7507 9309 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 4902 6206 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 29196 29999 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 28099 29199 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 6234 7514 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00363 1353 1943 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID099
Contig Start End Strand Gene Coverage Identity Accession Product
contig00001 473529 473984 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 474738 475388 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 475807 476223 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 476250 477083 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 99528 100274 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 100274 101131 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 102765 103952 - entC 100.0 97.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 118596 119366 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 101145 102755 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 110839 114668 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 105275 106525 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00007 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 142345 143765 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 55513 57093 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 24701 25993 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00010 116331 118571 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 104315 105271 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 108626 109441 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 106624 107640 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 107637 108629 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 114886 116088 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00016 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 1112 1714 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 38 634 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 353256 354086 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 351166 353016 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 349673 351166 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 348474 349673 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347978 348433 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347411 347941 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347043 347414 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 346441 347010 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 345467 346444 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 344292 345152 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 343754 344176 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 546899 547951 + ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00014 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00014 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID09CT
Contig Start End Strand Gene Coverage Identity Accession Product
contig00003 8284 8739 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 6880 7530 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 6045 6461 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 5185 6018 - csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99363 100109 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100109 100966 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102600 103787 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118432 119202 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100980 102590 - entE 100.0 96.2 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110675 114504 - entF 98.7 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 105110 106360 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 245773 247671 - espL1 100.0 94.9 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 11613 12668 - espR1 83.8 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 18843 20263 + espX1 99.9 94.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 55534 57115 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 24716 26008 + espX5 100.0 95.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 131886 136111 - fdeC 99.4 91.8 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116167 118407 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104150 105106 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108461 109276 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106459 107475 + fepD 100.0 96.3 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107472 108464 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114722 115924 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 100460 101064 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00028 1110 1712 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 99094 99819 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 96391 99027 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00028 36 632 - fimE 100.0 98.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 95851 96384 - fimF 100.0 97.0 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 95335 95838 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 94413 95324 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 99856 100395 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00008 33909 34739 + gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 34979 36829 + gspD 100.0 97.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 36829 38322 + gspE 100.0 96.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 38322 39521 + gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 39562 40017 + gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40054 40584 + gspH 100.0 95.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40581 40952 + gspI 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40985 41554 + gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 41551 42528 + gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 42843 43703 + gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 43819 44241 + gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 161723 162775 - ompA 100.0 94.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 145195 145948 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 143628 145271 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 141113 143638 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 140419 141087 + yagY/ecpB 100.0 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 139775 140362 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 139110 139700 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID101
Contig Start End Strand Gene Coverage Identity Accession Product
contig00001 289804 290259 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 291013 291663 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 292082 292498 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 292525 293358 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 100347 101093 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 101093 101950 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 103584 104771 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 119415 120185 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 101964 103574 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 111658 115487 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 106094 107344 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00010 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 200547 201967 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 39590 41170 + espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00012 70690 71982 - espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00008 117150 119390 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 105134 106090 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 109445 110260 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 107443 108459 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 108456 109448 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 115705 116907 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00018 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00036 26609 27211 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00036 27689 28285 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 353256 354086 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 351166 353016 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 349673 351166 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 348474 349673 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347978 348433 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347411 347941 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347043 347414 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 346441 347010 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 345467 346444 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 344292 345152 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 343754 344176 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 363174 364226 + ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID107II
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 66069 66374 - afaA 100.0 99.7 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 65055 65799 - afaB-I 100.0 99.9 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 62380 64962 - afaC-I 100.0 99.2 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 60692 61174 - afaE-V 100.0 97.5 CAA62863 (afaE-V) AfaE-V adhesin [Afimbrial adhesin AFA-V (AI013)] [Escherichia coli str. AL 851]
contig00016 67310 68738 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 176915 177943 - chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 180580 181572 + chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 184108 185100 + chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 185067 185867 + chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 181592 182929 + chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 183436 184059 + chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00029 33947 36991 - cnf1 100.0 99.9 CAA50007 (cnf1) cytotoxic necrotizing factor 1 [CNF-1 (VF0240)] [Escherichia coli str. E-B35]
contig00004 176502 176957 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 175096 175746 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 174261 174677 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 173401 174234 - csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 69707 69934 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00018 61921 62364 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00018 61376 61549 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00001 337365 338111 - entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 338111 338968 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 340602 341789 - entC 100.0 98.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 356246 357016 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 338982 340592 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 348465 352318 - entF 99.3 96.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 342926 344176 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 161464 163362 - espL1 100.0 96.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 40325 41575 + espR1 99.3 94.7 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 202921 204342 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 57193 58773 + espX4 100.0 96.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 163453 164201 - espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 146422 146991 - espY2 100.0 94.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 44734 47142 + espY4 99.8 89.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 249146 253387 - fdeC 99.8 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00001 353981 356221 + fepA 100.0 97.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 341966 342922 + fepB 100.0 98.2 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 346277 347092 + fepC 100.0 97.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 344275 345291 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 345288 346280 + fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 352536 353738 - fes 100.0 97.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 345174 345779 - fimA 100.0 92.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 1111 1713 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 343808 344533 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 341105 343741 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 37 633 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 340565 341098 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 340049 340552 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 339127 340038 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 344570 345109 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 29363 31384 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00030 33848 34678 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 34918 36768 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 36768 38261 + gspE 100.0 94.6 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 38261 39460 + gspF 100.0 94.5 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 39501 39956 + gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 39993 40523 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 40520 40891 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 40924 41493 + gspJ 100.0 94.6 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 41490 42467 + gspK 100.0 96.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 42782 43642 + gspL 100.0 95.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00030 43758 44179 + gspM 99.8 97.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00029 41586 44660 - hlyA 100.0 98.6 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00029 39392 41515 - hlyB 100.0 99.2 NP_755448 (hlyB) Hemolysin B [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00029 44672 45346 - hlyC 100.0 100.0 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00029 37937 39373 - hlyD 100.0 99.9 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00027 16263 25754 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 10068 16175 + irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00053 7018 8805 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 8806 9753 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 9753 11495 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 11492 12813 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00053 12751 15052 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00047 12726 14402 - kpsD 100.0 97.9 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00030 45237 46013 + kpsM 100.0 95.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 104336 105376 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00029 13830 14144 - papB 100.0 99.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 9849 12371 - papC 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 9044 9649 - papD 100.0 99.8 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 7332 7871 - papE 100.0 100.0 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 6757 7287 - papF 100.0 100.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 5703 6713 - papG 100.0 99.1 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 12418 13005 - papH 100.0 98.0 NP_755466 (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 14549 14782 + papI 100.0 94.0 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 8426 9007 - papJ 100.0 98.6 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 7880 8419 - papK 100.0 99.3 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00029 4889 5440 - papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00125 173 724 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00007 177992 179974 - shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00007 182942 183436 + shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00006 268799 269552 + yagV/ecpE 99.7 98.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 267232 268875 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 264717 267242 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 264023 264691 + yagY/ecpB 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 263378 263965 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 8918 9877 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 27655 29232 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 6949 8751 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 5160 6962 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 2555 3859 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 26848 27651 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 25751 26851 + ybtU 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 3887 5167 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 262713 263303 + ykgK/ecpR 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID124
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 8267 8722 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 6862 7512 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 6027 6443 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 5167 6000 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 99821 100678 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 66391 68290 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 37584 39770 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00039 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 203260 204681 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 7788 9368 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00053 94 1386 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 164302 165113 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 73944 78192 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00011 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00043 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 27347 27949 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 26276 26870 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00006 52965 53795 - gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 50875 52725 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 49382 50875 - gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 48183 49382 - gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 47687 48142 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 47121 47650 - gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 46753 47124 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 46151 46720 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 45177 46154 - gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 44002 44862 - gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00006 43464 43886 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 145353 146393 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00073 2274 2586 - papB 99.4 99.0 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00073 3009 3229 + papI 94.4 98.6 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00055 5439 6192 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00055 3872 5515 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00055 1357 3882 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00055 663 1331 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00055 18 605 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 81214 81804 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID127
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49272 50700 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00018 8267 8722 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 6862 7512 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 6027 6443 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 5167 6000 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00016 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 99821 100678 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 66391 68290 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 37583 39769 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 25291 26425 - espR4 99.5 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 50504 51925 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 7787 9367 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00030 31378 32670 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00001 90075 90886 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00016 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00038 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 27347 27949 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 26276 26870 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 86337 88358 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 30434 31264 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 31504 33354 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 33354 34847 + gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 34847 36046 + gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 36087 36542 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 36579 37108 + gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 37105 37476 + gspI 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 37509 38078 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 38075 39052 + gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 39367 40227 + gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 40343 40765 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 73237 82728 + irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 67042 73149 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 145353 146393 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 65892 66851 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 84629 86206 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 63923 65725 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 62134 63936 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 59529 60833 - ybtS 100.0 99.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 83822 84625 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 82725 83825 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 60861 62141 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
ID128
Contig Start End Strand Gene Coverage Identity Accession Product
contig00017 71089 72517 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 103007 103462 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 104215 104865 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 105284 105700 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 105727 106560 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 281540 282286 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 282286 283143 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 284777 285964 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 300453 301114 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 283157 284767 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 292644 296525 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 287101 288351 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 47884 52131 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 298188 300428 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 286141 287097 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 290452 291267 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 288450 289466 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 289463 290455 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 296743 297945 - fes 100.0 98.9 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 331497 332101 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 330131 330856 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 327428 330064 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 332524 333120 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 326888 327421 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 326372 326875 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 325450 326361 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 330893 331432 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 57323 59344 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 47338 48168 - gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 45248 47098 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 43755 45248 - gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 42556 43755 - gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 42060 42515 - gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 41493 42023 - gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 41125 41496 - gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 40523 41092 - gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 39549 40526 - gspK 100.0 96.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 38374 39234 - gspL 100.0 94.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 37840 38258 - gspM 99.0 93.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00016 62953 72444 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 72532 78639 - irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00028 8836 10617 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 10618 11565 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00028 11565 13307 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 13304 14625 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00028 14563 16864 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00003 24930 26606 + kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 35860 36636 - kpsM 100.0 95.4 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 173433 174485 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00028 750 1063 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00028 1468 1701 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00062 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00028 17796 21695 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00013 67469 68222 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 65902 67545 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 63387 65912 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 62693 63361 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00013 62049 62636 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 78830 79789 - ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 59475 61052 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 79956 81758 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 81745 83547 + ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 84848 86152 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 61056 61859 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 61856 62956 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 83540 84820 + ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00013 61384 61974 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID129E
Contig Start End Strand Gene Coverage Identity Accession Product
contig00003 254364 254819 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 255573 256223 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 256642 257058 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 257085 257918 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 99273 100019 - entA 100.0 95.8 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 100019 100876 - entB 100.0 97.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 102510 103697 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 118341 119111 + entD 100.0 93.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 100890 102500 - entE 100.0 95.7 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 110560 114413 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 105020 106270 - entS 100.0 95.5 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00012 65768 67666 - espL1 100.0 94.8 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 38965 40020 - espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 18863 20284 + espX1 100.0 94.4 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 45992 47572 + espX4 99.9 93.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 116375 117667 - espX5 100.0 95.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 46877 51102 - fdeC 99.4 92.8 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00007 116076 118316 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 104060 105016 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 108371 109186 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 106369 107385 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 107382 108374 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 114631 115833 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00022 100499 101104 - fimA 100.0 91.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 1121 1723 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 99133 99858 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 96430 99066 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 47 643 - fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 95890 96423 - fimF 100.0 96.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 95374 95877 - fimG 100.0 97.6 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 94452 95363 - fimH 100.0 97.8 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00022 99895 100434 - fimI 100.0 98.0 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 372113 372943 - gspC 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 370023 371873 - gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 368530 370023 - gspE 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 367331 368530 - gspF 100.0 96.8 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 366835 367290 - gspG 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 366268 366798 - gspH 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 365900 366271 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 365298 365867 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 364324 365301 - gspK 100.0 97.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 363149 364009 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 362611 363033 - gspM 100.0 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00013 123759 124811 + ompA 100.0 94.7 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 60209 60962 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 58642 60285 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 56127 58652 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 55433 56101 + yagY/ecpB 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 54788 55375 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 54123 54713 + ykgK/ecpR 100.0 97.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID130
Contig Start End Strand Gene Coverage Identity Accession Product
contig00014 57551 58958 + aslA 98.5 92.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 377573 378028 + csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 376168 376818 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 375333 375749 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 374473 375306 - csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99238 99984 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 99984 100841 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102475 103662 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118306 119076 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100855 102465 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110525 114378 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104985 106235 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 505701 507599 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 73495 75681 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 25251 26305 + espR1 83.7 93.9 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 202150 203570 + espX1 99.9 95.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 43685 45265 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 12895 14187 + espX5 100.0 96.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 33673 37921 - fdeC 99.9 94.3 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116041 118281 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104025 104981 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108336 109151 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106334 107350 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107347 108339 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114596 115798 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00015 94960 95571 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 18766 19368 + fimB 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 93594 94319 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 90891 93527 - fimD 100.0 98.4 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 19845 20439 + fimE 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 90351 90884 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 89835 90338 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 88913 89824 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 94356 94895 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 244222 246243 - fyuA 100.0 99.7 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 249852 259343 - irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 259431 265538 - irp2 100.0 99.7 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 303382 304422 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 47027 47780 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 45460 47103 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 42945 45470 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 42251 42919 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 41606 42193 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 265729 266688 - ybtA 100.0 99.2 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 246374 247951 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 266855 268657 + ybtP 100.0 99.5 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 268644 270446 + ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 271747 273051 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 247955 248758 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 248755 249855 - ybtU 100.0 99.1 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 270439 271719 + ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00016 40941 41531 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID134
Contig Start End Strand Gene Coverage Identity Accession Product
contig00324 1 1174 + aslA 82.1 92.7 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00856 303 719 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00856 746 1579 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01945 110 943 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig01852 431 1068 - entA 85.4 96.2 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00082 2387 3157 + entD 100.0 93.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00228 105 875 - entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00543 1 1515 + entE 94.0 95.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01014 1 1515 + entE 94.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00338 234 2133 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00659 76 1974 - espL1 100.0 94.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01226 1 1417 + espX4 89.6 96.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01239 1 1405 + espX4 88.8 93.4 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00161 2245 3537 + espX5 100.0 95.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00660 637 1418 + espY1 99.9 90.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00061 1058 5283 - fdeC 99.4 92.8 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00082 122 2362 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00228 900 3140 - fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00909 506 1522 + fepD 100.0 95.9 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00155 1 1052 + fes 87.5 96.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00263 1 1052 + fes 87.5 96.3 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00836 802 1407 - fimA 100.0 90.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01274 715 1320 - fimA 100.0 91.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00758 1203 1736 - fimF 100.0 96.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00758 687 1190 - fimG 100.0 97.6 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00836 199 737 - fimI 99.8 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01274 111 650 - fimI 100.0 98.0 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00110 2360 3190 + gspC 100.0 96.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00249 751 1581 + gspC 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01259 1 993 + gspF 82.8 95.6 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01262 1 993 + gspF 82.8 96.4 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 54086 54508 - gspM 100.0 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02024 340 762 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02423 1 854 + ompA 82.0 97.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00031 3816 4569 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 2249 3892 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00031 1 2259 + yagX/ecpC 89.4 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01362 400 1068 + yagY/ecpB 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID136
Contig Start End Strand Gene Coverage Identity Accession Product
contig00015 107924 108379 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 109133 109783 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 110202 110618 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 110645 111478 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 99457 100203 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 100203 101060 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 102694 103881 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 118525 119295 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 101074 102684 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 110768 114597 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 105204 106454 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00009 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00032 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 142351 143771 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 55522 57102 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 24711 26003 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00007 116260 118500 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 104244 105200 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 108555 109370 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 106553 107569 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 107566 108558 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 114815 116017 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00016 107592 108196 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 39364 39966 + fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106220 106945 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 103517 106153 - fimD 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 40444 41040 + fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102977 103510 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102461 102964 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 101539 102450 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106988 107527 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 379409 380239 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 377319 379169 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 375826 377319 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 374627 375826 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 374131 374586 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 373564 374094 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 373196 373567 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 372594 373163 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 371620 372597 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 370445 371305 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 369907 370329 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00011 98754 99806 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 54824 56467 + yagW/ecpD 100.0 98.5 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID141
Contig Start End Strand Gene Coverage Identity Accession Product
contig00203 1 641 + entA 85.8 98.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00416 1 532 - fimA 87.8 89.7 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00177 147 460 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
ID142
Contig Start End Strand Gene Coverage Identity Accession Product
contig01476 48 801 - yagV/ecpE 99.7 85.3 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 1825 3307 + yagW/ecpD 90.2 88.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID164
Contig Start End Strand Gene Coverage Identity Accession Product
contig00038 14769 16197 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00102 1987 2103 - astA 100.0 99.1 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00034 8267 8722 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 6862 7512 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 6027 6443 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 5167 6000 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99134 99880 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 99880 100737 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102371 103558 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118202 118972 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100751 102361 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110421 114274 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104881 106131 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 19954 21853 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00050 19362 21548 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00040 25904 26957 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 87218 88639 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 164243 165823 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 133452 134744 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 48263 49074 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00056 15640 16140 - faeC 91.8 87.1 AAL47165 (faeC) FaeC [K88 pili/F4 fimbriae (AI040)] [Escherichia coli]
contig00056 13180 15518 - faeD 95.9 94.1 YP_002295985 (faeD) fimbrial usher protein FaeD [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00056 12465 13187 - faeE 93.0 94.3 YP_002295986 (faeE) fimbrial chaperone FaeE [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00056 11870 12361 - faeF 100.0 93.5 YP_002295987 (faeF) fimbrial protein FaeF [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00056 9830 10627 - faeH 100.0 84.8 YP_002295989 (faeH) fimbrial protein FaeH [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00056 9035 9798 - faeI 99.9 89.1 YP_002295990 (faeI) fimbrial protein FaeI [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00056 8245 9018 - faeJ 100.0 94.2 YP_002295991 (faeJ) fimbrial protein FaeJ [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00026 33580 37828 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 115937 118177 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 103921 104877 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108232 109047 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106230 107246 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107243 108235 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114492 115694 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00024 31397 33418 - fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 37027 46518 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 46606 52713 - irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00060 7017 8804 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00060 8805 9752 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00060 9752 11494 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00060 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00060 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00017 20305 21345 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00026 46935 47688 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 45368 47011 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 42853 45378 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 42159 42827 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 41514 42101 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 52904 53863 - ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 33549 35126 - ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 54030 55832 + ybtP 100.0 99.8 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 55819 57621 + ybtQ 100.0 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 58922 60226 + ybtS 100.0 99.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 35130 35933 - ybtT 100.0 99.2 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 35930 37030 - ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00024 57614 58894 + ybtX 100.0 99.9 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 40849 41439 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID169
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 73365 73670 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 72344 73088 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69669 72251 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 69210 69653 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00022 67972 68457 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 71089 72517 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00006 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00032 13547 14002 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 14755 15405 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 15824 16240 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00032 16267 17100 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00022 74588 74815 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00022 68659 68832 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00001 281532 282278 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 282278 283135 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 284769 285956 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 300445 301106 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 283149 284759 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 292636 296517 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 287093 288343 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 206173 210420 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00001 298180 300420 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 286133 287089 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 290444 291259 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 288442 289458 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 289455 290447 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 296735 297937 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00027 63546 64150 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 62180 62905 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 59477 62113 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00070 8989 9585 + fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 58937 59470 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 58421 58924 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 57499 58410 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 62942 63481 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00034 41502 43523 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00008 5172 6002 - gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 3082 4932 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 1589 3082 - gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 390 1589 - gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 112 642 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 639 1010 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 1043 1612 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 1609 2586 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 2901 3761 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00069 3877 4298 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00050 11815 17922 + irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00048 9495 11276 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00048 11277 12224 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00048 12224 13966 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00048 13963 15284 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00048 15222 17523 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00054 8799 10475 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00069 5357 6133 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00011 1054 2106 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00048 1409 1722 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00048 2127 2360 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00104 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00048 18455 22354 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00066 8392 9530 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00005 225758 226511 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 224191 225834 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 221676 224201 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 220982 221650 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 220338 220925 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00050 10665 11624 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00034 43654 45231 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00050 8696 10498 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00050 6907 8709 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00050 4302 5606 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00034 45235 46038 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00050 5634 6914 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 219673 220263 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID177
Contig Start End Strand Gene Coverage Identity Accession Product
contig00018 53238 54666 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 36589 37617 - chuS 100.0 96.4 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 43781 44773 + chuU 100.0 96.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 44740 45540 + chuV 100.0 98.1 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 41265 42602 + chuW 100.0 96.8 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 43109 43732 + chuY 100.0 96.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00005 55718 56173 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 56928 57578 + csgD 100.0 81.4 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 57997 58413 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 58440 59273 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 87858 88604 - entA 100.0 97.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 88604 89461 - entB 100.0 98.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 91095 92282 - entC 100.0 97.3 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 106739 107509 + entD 100.0 92.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 89475 91085 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 98958 102811 - entF 99.2 95.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 93419 94669 - entS 100.0 95.7 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 220950 222848 - espL1 100.0 96.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 64706 66892 + espL4 100.0 97.4 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00042 19883 21135 - espR1 99.4 94.3 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 14802 15941 + espR3 100.0 94.7 NP_288394 (espR3) Type III secretion system effector espR3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 12869 13978 + espR4 97.3 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 202198 203619 + espX1 100.0 96.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 30844 32424 - espX4 100.0 95.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 22900 24192 - espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 162775 163511 - espY1 97.9 93.9 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 145759 146309 - espY2 96.5 88.8 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 31222 32793 + espY3 100.0 95.5 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 39565 41973 + espY4 100.0 96.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 106407 110657 - fdeC 100.0 95.1 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00015 104474 106714 + fepA 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 92459 93415 + fepB 100.0 97.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 96770 97585 + fepC 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 94768 95784 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 95781 96773 + fepG 100.0 94.2 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 103029 104231 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 309512 310123 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 311621 312223 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 308146 308871 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 305444 308079 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 310550 311144 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 304904 305437 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 304388 304891 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 303466 304377 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 308908 309447 - fimI 100.0 98.9 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00007 37554 38384 - gspC 100.0 95.3 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 35464 37314 - gspD 100.0 96.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 33971 35464 - gspE 100.0 95.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 32772 33971 - gspF 100.0 95.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 32276 32731 - gspG 100.0 95.4 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 31709 32239 - gspH 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 31341 31712 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 30739 31308 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 29765 30742 - gspK 100.0 96.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 28590 29450 - gspL 100.0 95.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 28053 28474 - gspM 99.8 94.5 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 291666 292028 + gtrA 100.0 89.3 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00001 292025 292933 + gtrB 97.6 81.3 NP_706258 (gtrB) bactoprenol glucosyl transferase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00007 13223 14899 + kpsD 100.0 98.1 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00005 127746 128798 + ompA 100.0 95.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 37666 39648 - shuA 100.0 98.5 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00010 40253 41245 + shuT 100.0 98.1 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00010 42615 43109 + shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00009 125988 126741 + yagV/ecpE 99.7 97.9 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 124421 126064 + yagW/ecpD 100.0 98.8 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121906 124431 + yagX/ecpC 100.0 98.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 121212 121880 + yagY/ecpB 100.0 97.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 120568 121155 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 119903 120493 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID178
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 67237 68665 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 176914 177942 - chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 180579 181571 + chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 184107 185099 + chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 185066 185866 + chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 181591 182928 + chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 183435 184058 + chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00007 175787 176242 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 174381 175031 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 173546 173962 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 172686 173519 - csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00019 19648 20394 - entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 20394 21251 - entB 100.0 98.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 22885 24072 - entC 100.0 98.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 38529 39299 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 21265 22875 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 30748 34601 - entF 99.3 96.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 25209 26459 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 198777 200675 - espL1 100.0 96.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 49101 50351 + espR1 99.3 94.7 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 20282 21390 - espR4 97.2 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 203188 204609 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 57205 58785 + espX4 100.0 96.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 163720 164468 - espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00004 146689 147258 - espY2 100.0 93.9 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00015 44939 47347 + espY4 99.8 89.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 255018 259259 - fdeC 99.8 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00019 36264 38504 + fepA 100.0 97.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 24249 25205 + fepB 100.0 98.2 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 28560 29375 + fepC 100.0 97.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 26558 27574 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 27571 28563 + fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00019 34819 36021 - fes 100.0 97.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00020 38238 40259 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 33848 34678 + gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 34918 36768 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 36768 38261 + gspE 100.0 94.6 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 38261 39460 + gspF 100.0 94.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 39501 39956 + gspG 100.0 96.7 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 39993 40523 + gspH 100.0 97.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 40520 40891 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 40924 41493 + gspJ 100.0 96.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 41490 42467 + gspK 100.0 97.2 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 42782 43642 + gspL 100.0 94.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 43758 44179 + gspM 99.8 95.7 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00020 25138 34629 + irp1 100.0 99.2 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 18943 25050 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00046 7018 8805 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00046 8806 9752 + iucB 99.9 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00046 9752 11494 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00046 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00046 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00023 53381 55057 + kpsD 100.0 97.9 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00026 45241 46017 + kpsM 100.0 92.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 103621 104661 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00084 958 1509 + papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00008 177991 179973 - shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00008 182941 183435 + shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00006 274671 275424 + yagV/ecpE 99.7 98.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 273104 274747 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 270589 273114 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 269895 270563 + yagY/ecpB 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00006 269250 269837 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 17793 18752 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 36530 38107 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 15824 17626 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 14035 15837 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 11430 12734 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 35723 36526 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 34626 35726 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 12762 14042 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00006 268585 269175 + ykgK/ecpR 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID182
Contig Start End Strand Gene Coverage Identity Accession Product
contig00030 16559 17986 + aslA 99.9 93.5 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00055 1 789 + csgG 94.6 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00008 96808 97554 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 97554 98411 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 100045 101232 - entC 100.0 97.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 115876 116646 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 98425 100035 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 108095 111948 - entF 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 102555 103805 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00040 13782 15681 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00062 7453 8508 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00053 6006 7298 - espX5 100.0 96.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00079 3412 7660 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00008 113611 115851 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 101595 102551 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 105906 106721 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 103904 104920 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 104917 105909 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00008 112166 113368 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00010 94747 95358 - fimA 100.0 88.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 96856 97458 - fimB 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 93381 94106 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 90678 93314 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 95785 96379 - fimE 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 90138 90671 - fimF 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 89622 90125 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 88700 89611 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 94143 94682 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00028 17917 18747 + gspC 100.0 95.3 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 18987 20837 + gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 20837 22330 + gspE 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 22330 23529 + gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 23570 24025 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 24062 24592 + gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 24589 24960 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 24993 25562 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 25559 26536 + gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 26851 27711 + gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00028 27827 28249 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 81123 82448 + nleA/espI 100.0 97.8 NP_287961 (nleA/espI) Type III secretion system effector NleA [NleA/EspI (VF0338)] [Escherichia coli O157:H7 str. EDL933]
contig00027 19444 20484 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00089 5956 6709 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00089 4389 6032 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00089 1874 4399 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00089 1180 1848 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00089 534 1122 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID186
Contig Start End Strand Gene Coverage Identity Accession Product
contig00003 178176 178631 + csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 176772 177422 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 175937 176353 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00003 175077 175910 - csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00007 99596 100342 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 100342 101199 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 102833 104020 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 118664 119434 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 101213 102823 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 110907 114736 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 105343 106593 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00009 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 142372 143792 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 39590 41170 + espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 70690 71982 - espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00007 116399 118639 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 104383 105339 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 108694 109509 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 106692 107708 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 107705 108697 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00007 114954 116156 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00018 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00040 1112 1714 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00040 38 634 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00018 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 353256 354086 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 351166 353016 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 349673 351166 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 348474 349673 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 347978 348433 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 347411 347941 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 347043 347414 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 346441 347010 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 345467 346444 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 344292 345152 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 343754 344176 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00047 1792 2954 + iroB 99.9 98.4 NP_753168 (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00047 3017 6754 + iroC 100.0 99.2 NP_753167 (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00047 6858 8087 + iroD 100.0 98.9 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00047 8172 9128 + iroE 100.0 99.5 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00047 9173 11350 - iroN 100.0 99.1 NP_753164 (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073]
contig00003 104209 105261 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID187
Contig Start End Strand Gene Coverage Identity Accession Product
contig00036 14792 16220 + aslA 100.0 97.1 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00018 1 437 + csgB 95.6 82.7 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00085 355 1188 + csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99269 100015 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100015 100872 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102506 103693 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118337 119107 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100886 102496 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110556 114409 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 105016 106266 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 157262 159160 - espL1 100.0 96.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 73346 75532 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00040 25720 26774 + espR1 83.7 93.9 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 43550 45130 - espX4 99.9 93.4 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 12759 14051 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 116072 118312 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104056 105012 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108367 109182 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106365 107381 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107378 108370 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114627 115829 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00069 7943 8476 - fimF 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 7427 7930 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00069 6504 7416 - fimH 100.0 97.0 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 99656 100516 - gspL 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 99118 99540 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 73772 74824 - ompA 100.0 94.4 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00001 224412 225165 + yagV/ecpE 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 222845 224488 + yagW/ecpD 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 220330 222855 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 219636 220304 + yagY/ecpB 100.0 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 218991 219578 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00001 218326 218916 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID195
Contig Start End Strand Gene Coverage Identity Accession Product
contig00006 167361 167816 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 168570 169220 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 169639 170055 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 170082 170915 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99363 100109 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100109 100966 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102600 103787 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118432 119202 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100980 102590 - entE 100.0 96.2 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110675 114504 - entF 98.7 95.9 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 105110 106360 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 245552 247450 - espL1 100.0 94.9 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00017 11593 12648 - espR1 83.8 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 18843 20263 + espX1 99.9 94.3 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 55502 57083 - espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 24684 25976 + espX5 100.0 95.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00009 131886 136111 - fdeC 99.4 91.8 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116167 118407 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104150 105106 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108461 109276 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106459 107475 + fepD 100.0 96.3 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107472 108464 + fepG 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114722 115924 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 100460 101064 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 1111 1713 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 99094 99819 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 96391 99027 - fimD 100.0 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00031 37 633 - fimE 100.0 98.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 95851 96384 - fimF 100.0 97.0 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 95335 95838 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 94413 95324 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 99856 100395 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00008 33909 34739 + gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 34979 36829 + gspD 100.0 97.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 36829 38322 + gspE 100.0 96.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 38322 39521 + gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 39562 40017 + gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40054 40584 + gspH 100.0 95.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40581 40952 + gspI 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 40985 41554 + gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 41551 42528 + gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 42843 43703 + gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 43819 44241 + gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 104054 105106 - ompA 100.0 94.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 145195 145948 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 143628 145271 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 141113 143638 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 140419 141087 + yagY/ecpB 100.0 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 139775 140362 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 139110 139700 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID197
Contig Start End Strand Gene Coverage Identity Accession Product
contig00022 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00035 6296 6751 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 4891 5541 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 4056 4472 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00035 3196 4029 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00015 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 99821 100678 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00025 11801 13700 + espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00050 19358 21544 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 25445 26498 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 98648 99783 - espR4 99.6 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 144231 145652 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 164243 165823 - espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 133452 134744 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 105276 106087 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00039 20571 24819 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00015 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00027 46362 48383 - fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 51992 61483 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 61571 67678 - irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 7016 8803 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 8804 9751 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 9751 11493 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 11490 12811 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00055 12749 15050 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00001 282779 283819 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00039 33926 34679 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00039 32359 34002 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00039 29844 32369 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00039 29150 29818 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00039 28505 29092 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 67869 68828 - ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 48514 50091 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 68995 70797 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 70784 72586 + ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 73887 75191 + ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 50095 50898 - ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 50895 51995 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 72579 73859 + ybtX 100.0 97.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00039 27840 28430 + ykgK/ecpR 100.0 96.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID199
Contig Start End Strand Gene Coverage Identity Accession Product
contig00002 390237 390692 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 391446 392096 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 392515 392931 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 392958 393791 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00004 99473 100219 - entA 100.0 95.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 100219 101076 - entB 100.0 97.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 102710 103897 - entC 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 118541 119311 + entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 101090 102700 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 110784 114613 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 105220 106470 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00005 67814 69713 - espL1 100.0 95.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 25018 26073 + espR1 83.8 94.1 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 200456 201876 + espX1 99.9 95.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 55586 57166 - espX4 99.9 93.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 24737 26029 + espX5 100.0 95.9 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 33490 37738 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00004 116276 118516 + fepA 100.0 97.1 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 104260 105216 + fepB 100.0 97.1 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 108571 109386 + fepC 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 106569 107585 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 107582 108574 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00004 114831 116033 - fes 100.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 323693 324298 - fimA 100.0 92.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 325796 326398 - fimB 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 322327 323052 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 319624 322260 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 324722 325318 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 319084 319617 - fimF 100.0 98.3 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 318568 319071 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 317646 318557 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 323089 323628 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00009 35153 37174 - fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 314032 314862 + gspC 100.0 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 315102 316952 + gspD 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 316952 318445 + gspE 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 318445 319644 + gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 319685 320140 + gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 320177 320707 + gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 320704 321075 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 321108 321677 + gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 321674 322651 + gspK 100.0 97.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 322966 323826 + gspL 100.0 97.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 323942 324364 + gspM 100.0 95.0 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00009 40784 50275 - irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 50363 56470 - irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 77080 78132 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 46844 47597 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 45277 46920 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 42762 45287 + yagX/ecpC 100.0 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 42068 42736 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 41423 42010 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00009 56661 57620 - ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 37306 38883 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 57787 59589 + ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 59576 61378 + ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 62679 63983 + ybtS 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 38887 39690 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 39687 40787 - ybtU 100.0 99.5 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00009 61371 62651 + ybtX 100.0 99.8 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 40758 41348 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID208
Contig Start End Strand Gene Coverage Identity Accession Product
contig00005 155908 156213 - afaA 100.0 99.7 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00005 154880 155624 - afaB-I 100.0 99.9 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00005 152205 154787 - afaC-I 100.0 99.7 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00005 150517 150999 - afaE-V 100.0 97.3 CAA62863 (afaE-V) AfaE-V adhesin [Afimbrial adhesin AFA-V (AI013)] [Escherichia coli str. AL 851]
contig00016 67159 68587 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 73038 74066 - chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 76703 77695 + chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 80231 81223 + chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 81190 81990 + chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 77715 79052 + chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00003 79559 80182 + chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 84688 85143 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 68 718 + csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 1137 1553 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00052 1580 2413 + csgG 100.0 82.8 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 159546 159773 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00005 151746 152189 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00005 151201 151374 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00046 25963 26709 - entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 26709 27566 - entB 100.0 98.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 29200 30387 - entC 100.0 98.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 44844 45614 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 27580 29190 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 37063 40916 - entF 99.3 96.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 31524 32774 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00011 26968 28866 - espL1 100.0 96.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00092 8591 9841 + espR1 99.3 94.7 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00030 20282 21390 - espR4 97.2 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 5476 6896 - espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 45723 46471 + espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00006 62933 63502 + espY2 100.0 94.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 44736 47144 + espY4 99.8 89.4 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 44563 48804 - fdeC 99.8 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00046 42579 44819 + fepA 100.0 97.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 30564 31520 + fepB 100.0 98.2 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 34875 35690 + fepC 100.0 97.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 32873 33889 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 33886 34878 + fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00046 41134 42336 - fes 100.0 97.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00025 62418 63022 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 61052 61777 - fimC 100.0 98.8 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 58349 60985 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 63445 64041 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 57809 58342 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 57293 57796 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 56371 57282 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00025 61814 62353 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00037 22990 25011 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00343 897 1756 + gspL 99.9 94.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00343 1872 2293 + gspM 99.8 94.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00037 9890 19381 + irp1 100.0 99.2 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 3695 9802 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00136 7017 8804 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00136 8805 9752 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00136 9752 11494 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00165 2678 4420 + iucC 100.0 99.9 NP_709456 (iucC) aerobactin synthesis protein IucC [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00136 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00165 4417 5754 + iucD 100.0 99.8 NP_709457 (iucD) aerobactin synthesis protein IucC lysine 6-monooxygenase [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00136 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00165 5676 7955 + iutA 100.0 99.5 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00134 7651 9327 - kpsD 100.0 98.2 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00343 3468 4244 + kpsM 100.0 92.4 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 103526 104566 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00097 9542 10587 - ompA 99.0 84.7 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00195 1175 1488 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00426 96 635 + papE 99.4 93.9 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00426 680 1213 + papF 100.0 93.8 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00195 1893 2126 + papI 100.0 95.3 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00426 3734 4285 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00165 8889 12788 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00003 74115 76097 - shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00003 79065 79559 + shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00020 64216 64969 + yagV/ecpE 99.7 98.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 62649 64292 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 60134 62659 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 59440 60108 + yagY/ecpB 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 58795 59382 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00037 2545 3504 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 21282 22859 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 576 2378 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00030 54432 55736 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 20475 21278 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00037 19378 20478 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00030 55764 57044 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 58130 58720 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID214
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49276 50704 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00034 8086 8541 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 6681 7331 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 5846 6262 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00034 4986 5819 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00014 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 99821 100678 - entB 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 102312 103499 - entC 100.0 97.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00012 6113 8012 - espL1 100.0 97.5 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00053 19363 21549 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00045 25904 26957 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 203174 204595 + espX1 100.0 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00043 8865 10445 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 164219 165030 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 19539 23787 + fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00014 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00014 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00047 29974 30579 - fimA 100.0 92.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 32078 32680 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 28608 29333 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 25905 28541 - fimD 100.0 98.2 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 31004 31600 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 25365 25898 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 24849 25352 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 23927 24838 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 29370 29909 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00017 63468 65489 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 50381 59859 + irp1 99.9 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 44186 50293 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00065 7017 8804 + iucA 100.0 94.2 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 8805 9752 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 9752 11494 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 11491 12812 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00065 12750 15051 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00001 103766 104806 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00005 9679 10432 - yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 10356 11999 - yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 11989 14514 - yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 14540 15208 - yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00005 15266 15853 - yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00017 43036 43995 + ybtA 100.0 99.9 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 61760 63337 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 41067 42869 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 39278 41080 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 36673 37977 - ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 60953 61756 + ybtT 100.0 99.9 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 59856 60956 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00017 38005 39285 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 15928 16518 - ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID224
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00018 6602 7057 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 5197 5847 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 4362 4778 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00018 3502 4335 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99075 99821 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 99821 100678 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102312 103499 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118143 118913 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100692 102302 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110362 114215 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104822 106072 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 66086 67985 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 37583 39769 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00043 25267 26320 + espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 89032 90453 - espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 7787 9367 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00031 42346 43638 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 128614 129425 + espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00047 21145 25393 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 115878 118118 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 103862 104818 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108173 108988 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106171 107187 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107184 108176 + fepG 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114433 115635 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00050 21382 21993 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 23491 24093 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 20016 20741 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 17313 19949 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 22420 23014 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 16773 17306 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 16257 16760 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 15335 16246 - fimH 100.0 99.1 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00050 20778 21317 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00005 30808 31638 + gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 31878 33728 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 33728 35221 + gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 35221 36420 + gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 36461 36916 + gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 36953 37482 + gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 37479 37850 + gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 37883 38452 + gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 38449 39426 + gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 39741 40601 + gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 40717 41139 + gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00004 103824 104864 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00059 5437 6190 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00059 3870 5513 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00059 1355 3880 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00059 661 1329 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00059 16 603 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00047 28415 29005 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID228
Contig Start End Strand Gene Coverage Identity Accession Product
contig00019 73372 73677 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00019 72344 73088 - afaB-I 100.0 99.6 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00019 69669 72251 - afaC-I 100.0 99.9 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00019 69210 69653 - afaD 100.0 100.0 CAW30800 (afaD) AfaD [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00019 67972 68457 - afaE-I 100.0 99.8 CAW30801 (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863]
contig00018 71089 72517 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00008 172126 174072 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 171049 172077 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 174714 175706 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 178242 179234 + chuU 100.0 99.5 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 179201 180001 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 175726 177063 + chuW 100.0 98.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177076 177570 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00008 177570 178193 + chuY 100.0 98.2 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00011 102913 103368 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 104121 104771 + csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105190 105606 + csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 105633 106466 + csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00019 74595 74822 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00019 68659 68832 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00002 315696 316442 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 316442 317299 - entB 100.0 99.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 318933 320120 - entC 100.0 98.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 334609 335270 + entD 85.9 96.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 317313 318923 - entE 100.0 98.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 326800 330681 - entF 100.0 98.2 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 321257 322507 - entS 100.0 97.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 228931 233178 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00002 332344 334584 + fepA 100.0 98.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 320297 321253 + fepB 100.0 98.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 324608 325423 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 322606 323622 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 323619 324611 + fepG 100.0 97.9 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 330899 332101 - fes 100.0 99.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00021 63524 64128 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 62158 62883 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 59455 62091 - fimD 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 64551 65147 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 58915 59448 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 58399 58902 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 57477 58388 - fimH 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 62920 63459 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00026 24121 26142 - fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00007 167409 168239 + gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 168479 170329 + gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 170329 171822 + gspE 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 171822 173021 + gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173062 173517 + gspG 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 173554 174084 + gspH 100.0 94.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174081 174452 + gspI 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 174485 175054 + gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 175051 176028 + gspK 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 176343 177203 + gspL 100.0 94.8 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00007 177319 177740 + gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00026 29751 39242 - irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 39330 45437 - irp2 100.0 99.4 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00038 8835 10616 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00038 10617 11564 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00038 11564 13306 + iucC 100.0 98.2 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00038 13303 14624 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00038 14562 16863 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00007 192461 194137 - kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00007 178799 179575 + kpsM 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00015 1055 2107 + ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00038 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00038 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00092 763 1314 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00038 17795 21694 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00003 248516 249269 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 246949 248592 + yagW/ecpD 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 244434 246959 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 243740 244408 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00003 243096 243683 + yagZ/ecpA 100.0 98.5 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00026 45628 46587 - ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 26273 27850 - ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 46754 48556 + ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 48543 50345 + ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 51646 52950 + ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 27854 28657 - ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 28654 29754 - ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00026 50338 51618 + ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 242431 243021 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID229
Contig Start End Strand Gene Coverage Identity Accession Product
contig00001 473529 473984 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 474738 475388 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 475807 476223 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 476250 477083 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00012 99504 100250 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 100250 101107 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 102741 103928 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 118572 119342 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 101121 102731 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 110815 114644 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 105251 106501 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00004 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00030 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 200479 201899 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 55542 57122 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 24730 26022 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00012 116307 118547 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 104291 105247 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 108602 109417 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 106600 107616 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 107613 108605 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00012 114862 116064 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00013 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 99695 100297 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 98621 99217 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00013 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 353256 354086 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 351166 353016 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 349673 351166 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 348474 349673 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347978 348433 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347411 347941 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347043 347414 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 346441 347010 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 345467 346444 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 344292 345152 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 343754 344176 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 546899 547951 + ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID231
Contig Start End Strand Gene Coverage Identity Accession Product
contig00002 188648 189103 + csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 187244 187894 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 186409 186825 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 185549 186382 - csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99546 100292 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100292 101149 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102783 103970 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118614 119384 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 101163 102773 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110857 114686 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 105293 106543 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00008 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00036 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00011 142345 143765 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 55541 57121 - espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00019 24730 26022 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00024 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 116349 118589 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104333 105289 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108644 109459 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106642 107658 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107655 108647 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114904 116106 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00016 107592 108196 - fimA 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 39364 39966 + fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106220 106945 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 103517 106153 - fimD 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00035 40444 41040 + fimE 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102977 103510 - fimF 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 102461 102964 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 101539 102450 - fimH 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00016 106988 107527 - fimI 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00001 280819 281649 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 278729 280579 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 277236 278729 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 276037 277236 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 275541 275996 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 274974 275504 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 274606 274977 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 274004 274573 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 273030 274007 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 271855 272715 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 271317 271739 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 114681 115733 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00024 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 54824 56467 + yagW/ecpD 100.0 98.5 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 52309 54834 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00024 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID233
Contig Start End Strand Gene Coverage Identity Accession Product
contig00049 9390 9504 + astA 98.3 88.7 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00693 123 894 + fepC 94.6 80.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00070 10289 11341 - ompA 100.0 85.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00499 320 1073 - yagV/ecpE 99.7 85.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00499 999 2534 - yagW/ecpD 93.4 89.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00171 6061 8586 + yagX/ecpC 100.0 87.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00171 5367 6035 + yagY/ecpB 100.0 86.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00171 4722 5305 + yagZ/ecpA 99.3 89.6 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00171 4067 4647 + ykgK/ecpR 98.3 87.4 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID235
Contig Start End Strand Gene Coverage Identity Accession Product
contig00040 18172 18477 - afaA 100.0 100.0 CAW30797 (afaA) fimbrial major subunit AfaA [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00040 17123 17867 - afaB-I 100.0 99.7 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00040 14448 17030 - afaC-I 100.0 99.8 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00040 12760 13242 - afaE-V 100.0 83.8 CAA62863 (afaE-V) AfaE-V adhesin [Afimbrial adhesin AFA-V (AI013)] [Escherichia coli str. AL 851]
contig00017 67243 68671 + aslA 100.0 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00009 73038 74066 - chuS 100.0 98.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 76703 77695 + chuT 100.0 99.4 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 80231 81223 + chuU 100.0 99.1 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 81190 81990 + chuV 100.0 98.4 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 77715 79052 + chuW 100.0 97.9 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00009 79559 80182 + chuY 100.0 96.3 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00012 163196 163651 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 174374 175024 - csgD 100.0 81.3 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 173539 173955 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00011 172679 173512 - csgG 100.0 82.8 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00040 19395 19622 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00040 13989 14432 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00040 13444 13617 - draP 100.0 98.8 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00003 337366 338112 - entA 100.0 96.4 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 338112 338969 - entB 100.0 98.2 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 340603 341790 - entC 100.0 98.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 356247 357017 + entD 100.0 93.9 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 338983 340593 - entE 100.0 96.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 348466 352319 - entF 99.3 96.3 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 342927 344177 - entS 100.0 96.3 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00002 198794 200692 - espL1 100.0 96.0 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00025 49102 50352 + espR1 99.3 94.7 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00022 20282 21390 - espR4 97.2 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 5476 6896 - espX1 99.9 95.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00021 57193 58773 + espX4 100.0 96.0 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 45723 46471 + espY1 99.5 94.4 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00007 62933 63502 + espY2 100.0 94.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00020 44513 48754 - fdeC 99.8 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00003 353982 356222 + fepA 100.0 97.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 341967 342923 + fepB 100.0 98.2 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 346278 347093 + fepC 100.0 97.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 344276 345292 + fepD 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 345289 346281 + fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00003 352537 353739 - fes 100.0 97.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00034 7887 9908 + fyuA 100.0 99.8 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 32245 33075 - gspC 100.0 93.9 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 30155 32005 - gspD 100.0 96.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 28662 30155 - gspE 100.0 95.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 27463 28662 - gspF 100.0 95.4 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 26967 27422 - gspG 100.0 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 26400 26930 - gspH 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 26032 26403 - gspI 100.0 94.4 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 25430 25999 - gspJ 100.0 96.0 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 24456 25433 - gspK 100.0 96.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 23281 24141 - gspL 100.0 94.7 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00005 22744 23165 - gspM 99.8 91.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00022 61945 68052 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00055 1586 3373 - iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00059 2017 3798 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00055 638 1585 - iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00059 3799 4746 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00059 4746 6488 + iucC 100.0 98.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00059 6485 7806 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00005 9975 11651 + kpsD 100.0 98.3 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00005 20905 21681 - kpsM 100.0 94.5 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00011 103614 104654 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00060 749 1062 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00060 1467 1700 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00087 256 807 + papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00069 941 4840 + sat 100.0 99.6 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00009 74115 76097 - shuA 100.0 98.0 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00009 79065 79559 + shuX 100.0 96.6 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00020 64166 64919 + yagV/ecpE 99.7 98.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 62599 64242 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 60084 62609 + yagX/ecpC 100.0 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 59390 60058 + yagY/ecpB 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00020 58745 59332 + yagZ/ecpA 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 60795 61754 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00034 6179 7756 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 58826 60628 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 57037 58839 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 54432 55736 - ybtS 100.0 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00034 5372 6175 + ybtT 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00034 4275 5375 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 55764 57044 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00020 58080 58670 + ykgK/ecpR 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID237
Contig Start End Strand Gene Coverage Identity Accession Product
contig00001 446599 447054 - csgB 99.8 84.0 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 447808 448458 + csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 448877 449293 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00001 449320 450153 + csgG 100.0 83.1 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00009 99596 100342 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 100342 101199 - entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 102833 104020 - entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 118664 119434 + entD 100.0 94.0 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 101213 102823 - entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 110907 114736 - entF 98.7 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 105343 106593 - entS 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00011 74456 76324 - espL1 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00033 24866 25921 + espR1 83.8 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00013 142372 143792 + espX1 99.9 94.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 39590 41170 + espX4 99.9 93.1 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00014 70690 71982 - espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00018 43044 47285 - fdeC 99.8 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00009 116399 118639 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 104383 105339 + fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 108694 109509 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 106692 107708 + fepD 100.0 96.0 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 107705 108697 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00009 114954 116156 - fes 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 97591 98196 - fimA 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 27228 27830 + fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 96225 96950 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 93522 96158 - fimD 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00038 28308 28904 + fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 92982 93515 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 92466 92969 - fimG 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 91544 92455 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 96987 97526 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 353256 354086 - gspC 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 351166 353016 - gspD 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 349673 351166 - gspE 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 348474 349673 - gspF 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347978 348433 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347411 347941 - gspH 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 347043 347414 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 346441 347010 - gspJ 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 345467 346444 - gspK 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 344292 345152 - gspL 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 343754 344176 - gspM 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00010 104187 105239 - ompA 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00018 56391 57144 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00018 54824 56467 + yagW/ecpD 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00018 52309 54834 + yagX/ecpC 100.0 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00018 51615 52283 + yagY/ecpB 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00018 50970 51557 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00018 50305 50895 + ykgK/ecpR 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID256
Contig Start End Strand Gene Coverage Identity Accession Product
contig00053 6790 7534 - afaB-I 100.0 98.2 CAW30798 (afaB-I) chaperone AfaB [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00053 4115 6697 - afaC-I 100.0 99.0 CAW30799 (afaC-I) usher AfaC [Afimbrial adhesin AFA-I mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
contig00015 71396 72824 + aslA 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00004 114245 116191 - chuA 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 113168 114196 - chuS 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 116834 117826 + chuT 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 120362 121354 + chuU 100.0 99.3 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 121321 122121 + chuV 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 117846 119183 + chuW 100.0 99.2 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 119196 119690 + chuX 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00004 119690 120313 + chuY 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00010 164930 165385 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 163527 164177 - csgD 100.0 81.6 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 162692 163108 - csgF 99.0 80.8 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00010 161832 162665 - csgG 100.0 83.2 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00053 8925 9152 + daaF 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00053 7816 8121 - draA 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00053 3656 4099 - draD 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00053 2358 2917 - draE2 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00053 3104 3277 - draP 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00001 315687 316433 - entA 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 316433 317290 - entB 100.0 99.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 318924 320111 - entC 100.0 99.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 334569 335230 + entD 85.9 97.7 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 317304 318914 - entE 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 326788 330641 - entF 99.3 97.8 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 321248 322498 - entS 100.0 98.2 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00022 11557 15804 - fdeC 99.9 97.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00001 332304 334544 + fepA 100.0 98.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 320288 321244 + fepB 100.0 99.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 324599 325414 + fepC 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 322597 323613 + fepD 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 323610 324602 + fepG 100.0 97.7 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00001 330859 332061 - fes 100.0 99.2 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00039 12072 12676 - fimA 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 14174 14776 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 10706 11431 - fimC 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 8003 10639 - fimD 100.0 98.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 13100 13696 - fimE 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 7463 7996 - fimF 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 6947 7450 - fimG 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 6025 6936 - fimH 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00039 11468 12007 - fimI 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 76644 78665 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00003 27806 28636 - gspC 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 25716 27566 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 24223 25716 - gspE 100.0 94.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 23024 24223 - gspF 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 22528 22983 - gspG 100.0 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 21961 22491 - gspH 100.0 96.6 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 21593 21964 - gspI 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 20991 21560 - gspJ 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 20017 20994 - gspK 100.0 94.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 18842 19702 - gspL 100.0 93.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00003 18317 18726 - gspM 96.9 93.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 63543 73034 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 57348 63455 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00044 2017 3798 + iucA 100.0 99.8 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00044 3799 4746 + iucB 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00044 4746 6488 + iucC 100.0 98.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00044 6485 7806 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00044 7744 10045 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00003 3663 5339 + kpsD 100.0 99.5 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00003 16383 17159 - kpsM 100.0 91.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00010 93898 94950 - ompA 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00062 2776 3089 - papB 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00062 3495 3728 + papI 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00062 451 1002 - papX 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00044 10977 14876 + sat 100.0 99.5 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00054 8438 9576 + senB 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00022 31142 31895 + yagV/ecpE 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 29575 31218 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 27060 29585 + yagX/ecpC 100.0 97.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 26366 27034 + yagY/ecpB 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00022 25722 26309 + yagZ/ecpA 100.0 98.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00021 56198 57157 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 74935 76512 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 54229 56031 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 52440 54242 - ybtQ 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 49835 51139 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 74128 74931 + ybtT 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 73031 74131 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00021 51167 52447 - ybtX 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00022 25057 25647 + ykgK/ecpR 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID263
Contig Start End Strand Gene Coverage Identity Accession Product
contig00020 49279 50707 + aslA 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 6302 6757 + csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 4897 5547 - csgD 100.0 81.1 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 4062 4478 - csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 3202 4035 - csgG 100.0 83.5 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00013 99332 100078 - entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100078 100935 - entB 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 102569 103756 - entC 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 118400 119170 + entD 100.0 95.2 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 100949 102559 - entE 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 110619 114472 - entF 99.3 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 105079 106329 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 66390 68289 - espL1 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 37583 39769 + espL4 100.0 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00039 15212 16265 - espR1 83.7 93.8 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00010 25291 26425 - espR4 99.5 84.3 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 203385 204806 + espX1 100.0 93.2 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00035 7787 9367 - espX4 99.9 93.2 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00034 31354 32646 + espX5 100.0 97.1 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00002 164424 165235 - espY1 99.9 87.0 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00005 206649 210897 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00013 116135 118375 + fepA 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 104119 105075 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 108430 109245 + fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 106428 107444 + fepD 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 107441 108433 + fepG 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00013 114690 115892 - fes 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00047 25238 25849 - fimA 100.0 88.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 27347 27949 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 23872 24597 - fimC 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 21169 23805 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 26276 26870 - fimE 99.7 99.3 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 20629 21162 - fimF 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 20113 20616 - fimG 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 19191 20102 - fimH 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00047 24634 25173 - fimI 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00010 86337 88358 + fyuA 100.0 99.9 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00014 17738 18568 - gspC 100.0 94.7 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 15648 17498 - gspD 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 14155 15648 - gspE 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 12956 14155 - gspF 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 12460 12915 - gspG 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 11894 12423 - gspH 99.8 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 11526 11897 - gspI 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 10924 11493 - gspJ 100.0 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 9950 10927 - gspK 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 8775 9635 - gspL 100.0 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00014 8237 8659 - gspM 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00010 73237 82728 + irp1 100.0 99.3 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 67042 73149 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 142713 143753 - ompA 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00054 5439 6192 + yagV/ecpE 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00054 3872 5515 + yagW/ecpD 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00054 1357 3882 + yagX/ecpC 100.0 98.8 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00054 663 1331 + yagY/ecpB 100.0 97.9 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00054 18 605 + yagZ/ecpA 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00010 65892 66851 + ybtA 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 84629 86206 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 63923 65725 - ybtP 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 62134 63936 - ybtQ 100.0 99.7 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 59529 60833 - ybtS 100.0 99.9 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 83822 84625 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 82725 83825 + ybtU 100.0 100.0 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00010 60861 62141 - ybtX 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00005 213919 214509 + ykgK/ecpR 100.0 97.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ID282
Contig Start End Strand Gene Coverage Identity Accession Product
contig00334 234 1662 + aslA 100.0 97.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 14462 15490 - chuS 100.0 96.2 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 21655 22647 + chuU 100.0 98.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 22614 23414 + chuV 100.0 98.9 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 19139 20476 + chuW 100.0 96.7 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00022 20983 21606 + chuY 100.0 97.0 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00289 4713 5168 - csgB 99.8 83.6 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00809 906 1322 + csgF 99.0 81.0 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00809 1349 2182 + csgG 100.0 83.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00063 9706 10452 - entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01116 792 1538 + entA 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 10452 11309 - entB 100.0 98.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01116 1 792 + entB 92.3 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 12943 13992 - entC 88.4 96.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00480 2332 3102 + entD 100.0 92.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00672 106 876 - entD 100.0 94.3 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00063 11323 12933 - entE 100.0 96.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 1277 5130 + entF 99.3 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 9420 10670 + entS 100.0 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00507 1173 2423 - entS 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00341 1109 3007 - espL1 100.0 96.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00429 1098 3284 + espL4 100.0 97.0 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00168 2406 3656 + espR1 99.3 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00091 9493 10601 - espR4 97.2 84.4 NP_288396 (espR4) Type III secretion system effector espR4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00093 4108 5529 + espX1 100.0 95.7 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00170 2864 4444 + espX4 100.0 96.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00523 2211 3791 + espX4 99.9 93.3 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00306 4129 5421 + espX5 100.0 96.0 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00531 2325 3617 + espX5 100.0 95.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00336 847 1568 + espY1 95.9 88.6 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00056 12424 12974 + espY2 96.5 88.0 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00371 2798 4369 + espY3 100.0 95.7 NP_286160 (espY3) Type III secretion system effector EspY3 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00041 844 3252 - espY4 100.0 96.3 NP_290352 (espY4) Type III secretion system effector EspY4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00029 2142 6383 - fdeC 99.8 92.7 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00400 247 4495 + fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00480 67 2307 + fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00672 901 3141 - fepA 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 10674 11630 - fepB 100.0 97.9 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00507 213 1169 + fepB 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 6504 7319 - fepC 100.0 96.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00757 1931 2746 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 8305 9321 - fepD 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00507 2522 3538 + fepD 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 7316 8308 - fepG 100.0 94.3 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00095 1 1059 + fes 88.0 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00605 1 1059 + fes 88.0 96.2 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00719 2476 3051 - fimA 95.0 91.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01198 112 723 + fimA 100.0 88.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 1113 1715 - fimB 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00719 1110 1835 - fimC 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00015 39 635 - fimE 100.0 98.7 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00990 355 888 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00719 1872 2411 - fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01198 788 1327 + fimI 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00004 33372 35393 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00001 27548 28378 - gspC 100.0 94.5 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 25458 27308 - gspD 100.0 96.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 23965 25458 - gspE 100.0 95.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 22766 23965 - gspF 100.0 94.1 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 22270 22725 - gspG 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 21703 22233 - gspH 100.0 95.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 21335 21706 - gspI 100.0 92.5 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 20733 21302 - gspJ 100.0 94.6 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 19759 20736 - gspK 100.0 96.8 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 18584 19444 - gspL 100.0 93.7 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00001 18047 18468 - gspM 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00025 3924 5086 + iroB 99.9 98.4 NP_753168 (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00025 5149 8886 + iroC 100.0 99.1 NP_753167 (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00025 8990 10219 + iroD 100.0 98.5 NP_753166 (iroD) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00025 10304 11260 + iroE 100.0 99.5 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00025 11305 13482 - iroN 100.0 99.1 NP_753164 (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073]
contig00004 20272 29763 + irp1 100.0 99.7 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 14077 20184 + irp2 100.0 99.5 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00082 4463 6250 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00082 6251 7198 + iucB 100.0 95.7 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00082 7198 8940 + iucC 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00082 8937 10258 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00082 10196 12497 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00673 2232 3200 - ompA 93.1 99.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00022 15539 17521 - shuA 100.0 98.1 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00022 18127 19119 + shuT 100.0 98.3 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00022 20489 20983 + shuX 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00629 494 1247 + yagV/ecpE 99.7 97.2 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 17739 20264 + yagX/ecpC 100.0 97.9 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00589 571 3096 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 17045 17713 + yagY/ecpB 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00589 1 545 + yagY/ecpB 81.5 99.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 16400 16987 + yagZ/ecpA 100.0 98.8 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00004 12926 13885 + ybtA 100.0 99.3 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 31664 33241 + ybtE 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 10957 12759 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 9168 10970 - ybtQ 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 6563 7867 - ybtS 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 30857 31660 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 29760 30860 + ybtU 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00004 7895 9175 - ybtX 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 15735 16325 + ykgK/ecpR 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01624 206 796 + ykgK/ecpR 100.0 97.1 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ORTHO013EI
Contig Start End Strand Gene Coverage Identity Accession Product
contig00083 391 505 - astA 98.3 91.3 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00001 6192 7025 - csgG 100.0 81.7 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 15401 15937 - lpfA 100.0 89.2 NP_462541 (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 14617 15315 - lpfB 100.0 89.1 NP_462540 (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 12066 14594 - lpfC 100.0 90.1 NP_462539 (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 10439 10966 - lpfE 100.0 83.3 NP_462537 (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00055 11527 12572 + ompA 99.0 84.7 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ORTHO055E
Contig Start End Strand Gene Coverage Identity Accession Product
contig00192 6014 6865 - entB 99.3 82.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00031 9 1079 - ompA 100.0 83.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00250 360 1113 - yagV/ecpE 99.7 84.2 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00250 1039 2682 - yagW/ecpD 100.0 88.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00250 2672 5197 - yagX/ecpC 100.0 86.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00250 5223 5891 - yagY/ecpB 100.0 88.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00250 5953 6536 - yagZ/ecpA 99.3 89.9 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
ORTHO082EI
Contig Start End Strand Gene Coverage Identity Accession Product
contig00004 31278 31772 + chuX 100.0 82.4 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00006 183570 184028 - csgB 100.0 81.7 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 184790 185440 + csgD 100.0 83.7 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 185445 185837 + csgE 99.2 82.8 NP_460112 (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 185863 186276 + csgF 99.3 81.1 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00006 186302 187135 + csgG 99.8 82.3 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00002 204677 205534 - entB 100.0 80.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 205548 207158 - entE 99.9 81.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00002 212909 213696 + fepC 96.6 80.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00011 83922 84907 + fliG 99.3 80.0 YP_001006742 (fliG) flagellar motor switch protein G [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
contig00013 61710 62756 + ompA 99.5 88.6 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
ORTHO08HW
Contig Start End Strand Gene Coverage Identity Accession Product
contig00016 28623 31667 - cnf1 100.0 99.9 CAA50007 (cnf1) cytotoxic necrotizing factor 1 [CNF-1 (VF0240)] [Escherichia coli str. E-B35]
contig00017 97772 98227 - csgB 99.8 83.8 NP_460114 (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 98981 99631 + csgD 100.0 81.0 NP_460113 (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 100050 100466 + csgF 99.0 81.2 NP_460111 (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00017 100493 101326 + csgG 100.0 83.0 NP_460110 (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
contig00005 212523 213269 + entA 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 211666 212523 + entB 100.0 97.9 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 208845 210032 + entC 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 193431 194201 - entD 100.0 95.1 NP_752599 (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 210042 211652 + entE 100.0 95.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 198129 201958 + entF 98.7 95.5 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 206272 207522 + entS 100.0 95.5 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00001 197211 199080 - espL1 98.5 95.2 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00037 25977 27031 + espR1 83.7 94.2 NP_287686 (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00003 127936 129356 + espX1 99.9 94.6 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00026 46399 47979 + espX4 99.9 92.9 NP_290672 (espX4) Type III secretion system effector EspX4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00038 5831 7123 - espX5 100.0 95.6 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00027 45881 50129 - fdeC 99.9 94.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00005 194226 196466 - fepA 100.0 97.5 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 207526 208482 - fepB 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 203356 204171 - fepC 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 205157 206173 - fepD 100.0 96.4 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 204168 205160 - fepG 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00005 196709 197911 + fes 100.0 96.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00003 244191 244796 - fimA 100.0 90.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 246294 246896 - fimB 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 242825 243550 - fimC 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 240122 242758 - fimD 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 245220 245816 - fimE 100.0 99.0 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 239582 240115 - fimF 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 239066 239569 - fimG 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 238144 239055 - fimH 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00003 243587 244126 - fimI 100.0 98.9 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00011 118814 120835 + fyuA 100.0 100.0 NP_405467 (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00023 4011 4988 - gspK 100.0 97.7 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00023 2836 3696 - gspL 100.0 96.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00023 2298 2720 - gspM 100.0 97.2 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00016 36262 39336 - hlyA 100.0 97.4 NP_755445 (hlyA) Hemolysin A [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00016 34068 36191 - hlyB 100.0 99.2 NP_755448 (hlyB) Hemolysin B [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00016 39348 40022 - hlyC 100.0 99.6 NP_755444 (hlyC) Hemolysin C [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00016 32613 34049 - hlyD 100.0 99.9 NP_755449 (hlyD) Hemolysin D [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00011 105714 115205 + irp1 100.0 99.8 NP_405471 (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 99519 105626 + irp2 100.0 99.8 NP_405472 (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00052 7018 8805 + iucA 100.0 94.3 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00052 8806 9753 + iucB 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00052 9753 11495 + iucC 100.0 96.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00052 11492 12813 + iucD 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00052 12751 15052 + iutA 100.0 88.4 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00008 104057 105109 - ompA 100.0 94.5 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 9953 10265 - papB 99.4 99.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 5979 8501 - papC 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 5174 5779 - papD 100.0 99.8 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 3462 4001 - papE 100.0 94.1 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 2883 3417 - papF 100.0 94.4 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 8548 9135 - papH 100.0 98.3 NP_755466 (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 10670 10903 + papI 100.0 94.4 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 4556 5137 - papJ 100.0 100.0 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 4010 4549 - papK 100.0 99.4 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00016 1018 1569 - papX 100.0 97.5 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00027 59235 59988 + yagV/ecpE 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 57668 59311 + yagW/ecpD 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 55153 57678 + yagX/ecpC 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 54459 55127 + yagY/ecpB 100.0 98.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00027 53814 54401 + yagZ/ecpA 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00011 98369 99328 + ybtA 100.0 99.8 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 117106 118683 + ybtE 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 96400 98202 - ybtP 100.0 99.7 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 94611 96413 - ybtQ 100.0 99.9 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 92006 93310 - ybtS 100.0 97.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 116299 117102 + ybtT 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 115202 116302 + ybtU 100.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00011 93338 94618 - ybtX 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00027 53149 53739 + ykgK/ecpR 100.0 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]


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Multi-Locus Sequence Typing (MLST)


Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
ID002 ecloacae 826 dnaA(261) fusA(171) gyrB(282) leuS(316) pyrG(49) rplB(12) rpoB(26)
ID003 ecoli 38 adk(4) fumC(26) gyrB(2) icd(25) mdh(5) purA(5) recA(19)
ID005 ecoli - adk(4) fumC(26) gyrB(2) icd(25) mdh(455) purA(5) recA(19)
ID006 ecoli 398 adk(64) fumC(7) gyrB(1) icd(1) mdh(8) purA(8) recA(6)
ID007I ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID011 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID013I ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID016I cfreundii - aspC(163,171) clpX(112,193) fadD(112,199) mdh(13,172) arcA(94,111) dnaG(84,154) lysP(169)
ID017 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID018CT ecoli 695 adk(10) fumC(11) gyrB(4) icd(12) mdh(8) purA(18) recA(2)
ID019 ecoli 542 adk(112) fumC(11) gyrB(5) icd(12) mdh(8) purA(8) recA(86)
ID01CT ecoli 48 adk(6) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID021 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID027 ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID031 cfreundii - aspC(171) clpX(193) fadD(112) mdh(172) arcA(114) dnaG(84) lysP(~101)
ID034I ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID041 ecoli 2797 adk(203) fumC(26) gyrB(27) icd(27) mdh(40) purA(5) recA(73)
ID043I ecoli 617 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID044 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID046II senterica - aroC(~622) dnaN(559) hemD(496?) hisD(~764) purE(~690) sucA(281) thrA(636)
ID049 ecoli 1312 adk(6) fumC(11) gyrB(4) icd(8) mdh(8) purA(78) recA(2)
ID051 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID054 ecoli 2852 adk(6) fumC(65) gyrB(5) icd(1) mdh(11) purA(13) recA(6)
ID057 ecoli 410 adk(6) fumC(4) gyrB(12) icd(1) mdh(20) purA(18) recA(7)
ID066II senterica - aroC(~620) dnaN(559) hemD(494) hisD(759?) purE(690?) sucA(581) thrA(636)
ID067 ecoli 1421 adk(8) fumC(7) gyrB(1) icd(8) mdh(8) purA(8) recA(2)
ID068 ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
ID073I ecoli 1421 adk(8) fumC(7) gyrB(1) icd(8) mdh(8) purA(8) recA(2)
ID077 ecoli 2852 adk(6) fumC(65) gyrB(5) icd(1) mdh(11) purA(13) recA(6)
ID081I ecoli 540 adk(6) fumC(7) gyrB(57) icd(1) mdh(8) purA(8) recA(2)
ID086II ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID088 ecoli 1284 adk(10) fumC(4) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID092 abaumannii_2 103 Pas_cpn60(7) Pas_fusA(3) Pas_gltA(2) Pas_pyrG(1) Pas_recA(7) Pas_rplB(1) Pas_rpoB(4)
ID094LLFII ecoli - adk(4) fumC(26) gyrB(10) icd(25) mdh(5) purA(5) recA(594?)
ID099 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID09CT ecoli 711 adk(9) fumC(6) gyrB(15) icd(131) mdh(24) purA(7) recA(7)
ID101 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID107II ecoli 648 adk(92) fumC(4) gyrB(87) icd(96) mdh(70) purA(58) recA(2)
ID124 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID127 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID128 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID129E ecoli 351 adk(6) fumC(95) gyrB(4) icd(88) mdh(7) purA(7) recA(7)
ID130 ecoli 3897 adk(10) fumC(7) gyrB(4) icd(8) mdh(12) purA(8) recA(7)
ID134 senterica - aroC(621) dnaN(559) hemD(552) hisD(765?) purE(617) sucA(281) thrA(695?)
ID136 ecoli 2852 adk(6) fumC(65) gyrB(5) icd(1) mdh(11) purA(13) recA(6)
ID141 - -
ID142 kpneumoniae - gapA(242?) infB(45) mdh(21) pgi(49) phoE(-) rpoB(22) tonB(-)
ID164 ecoli 617 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID169 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID177 ecoli 38 adk(4) fumC(26) gyrB(2) icd(25) mdh(5) purA(5) recA(19)
ID178 ecoli 648 adk(92) fumC(4) gyrB(87) icd(96) mdh(70) purA(58) recA(2)
ID182 ecoli 746 adk(10) fumC(7) gyrB(4) icd(8) mdh(12) purA(8) recA(2)
ID186 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID187 ecoli 5455 adk(10) fumC(27) gyrB(5) icd(8) mdh(12) purA(8) recA(2)
ID195 ecoli 711 adk(9) fumC(6) gyrB(15) icd(131) mdh(24) purA(7) recA(7)
ID197 ecoli 617 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID199 ecoli 224 adk(6) fumC(4) gyrB(33) icd(16) mdh(11) purA(8) recA(6)
ID208 ecoli 648 adk(92) fumC(4) gyrB(87) icd(96) mdh(70) purA(58) recA(2)
ID214 ecoli 617 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(73)
ID224 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID228 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID229 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID231 ecoli 2852 adk(6) fumC(65) gyrB(5) icd(1) mdh(11) purA(13) recA(6)
ID233 kpneumoniae - gapA(16) infB(18) mdh(21) pgi(27) phoE(57) rpoB(22) tonB(564?)
ID235 ecoli 648 adk(92) fumC(4) gyrB(87) icd(96) mdh(70) purA(58) recA(2)
ID237 ecoli 3580 adk(6) fumC(65) gyrB(344) icd(1) mdh(11) purA(13) recA(6)
ID256 ecoli 131 adk(53) fumC(40) gyrB(47) icd(13) mdh(36) purA(28) recA(29)
ID263 ecoli 167 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(13) recA(2)
ID282 senterica - aroC(620) dnaN(558,559) hemD(492) hisD(~763) purE(614) sucA(580) thrA(636?)
ORTHO013EI ecloacae - dnaA(~144) fusA(106) gyrB(~330) leuS(237) pyrG(~298) rplB(12) rpoB(148)
ORTHO055E kpneumoniae - gapA(18) infB(22) mdh(18) pgi(186) phoE(25) rpoB(37) tonB(51)
ORTHO082EI cfreundii 116 aspC(16) clpX(12) fadD(7) mdh(10) arcA(5) dnaG(55) lysP(5)
ORTHO08HW ecoli 410 adk(6) fumC(4) gyrB(12) icd(1) mdh(20) purA(18) recA(7)

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Pangenome Analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 0
Soft core genes (95% <= strains < 99%) 4
Shell genes (15% <= strains < 95%) 6073
Cloud genes (0% <= strains < 15%) 45883
Total genes (0% <= strains <= 100%) 51960

Schematic representation of genes presence (color) or absence (blank) between samples:


Pangenome tree based on presence/absence of accessory genes representation

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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WARNING: Core genome alignment tree was not generated during pangenome analysis. Please check.


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Insertion sequence characterization


Field Description
Region Numeric code given to insertion sequence (IS)
Orientation The orientation of IS position: Either forward (F) or reverse (F)
X-cordinates The left coordinate of the position
Y-coordinates The right coordinate of the position
Gap The distance between the x and y coordinates
CallType Describes whether a position hit is novel (not in reference) or known (in the reference)
LeftGene Locus tag ID of the gene closest to the left side of the IS position
LeftGeneDescription Description of the gene feature from the left side of the IS position. By default this is the product position
RightGene Locus tag ID of the gene closest to the right side of the IS position
RightGeneDescription Description of the gene feature from the right side of the IS position. By default this is the product position


Select the sample

ID005
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 319814 319815 novel b4403 putative rRNA methyltransferase b0304 putative pyridine nucleotide-disulfide oxidoreductase RclA
region_2 R -1 3583424 3583425 novel b4403 putative rRNA methyltransferase b3443 putative uncharacterized protein YrhA
ID007I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1090327 1090328 1 novel b1024 partially deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin b1024 partially deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin
ID016I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1101651 1101964 313 novel* b1037 curli secretion channel b1038 curli assembly component
ID017
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208341 2208342 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ID027
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 3031157 3031158 novel b4403 putative rRNA methyltransferase b2888 urate:H(+) symporter
ID031
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1749189 1749199 -10 novel b1669 conserved protein YdhT b1669 conserved protein YdhT
region_2 F 2385676 2385685 -9 novel b2270 IPR002035/DUF3520 domain-containing protein YfbK b2270 IPR002035/DUF3520 domain-containing protein YfbK
ID043I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 676260 676263 -3 novel b0644 Sel1 repeat-containing protein YbeQ b0644 Sel1 repeat-containing protein YbeQ
region_2 F 1577668 1577670 -2 novel b1496 ABC transporter family protein YddA b1496 ABC transporter family protein YddA
region_3 F 1581836 1581841 -5 novel b1498 putative sulfatase b1498 putative sulfatase
region_4 F 3414053 3414067 -14 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
region_5 R 3668436 3668445 -9 novel b3518 cytochrome c peroxidase b3518 cytochrome c peroxidase
ID044
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2448605 2448606 novel b4403 putative rRNA methyltransferase b2331 putative endonuclease SmrB
region_1 R 1474910 1474984 74 novel* b1406 pyridoxine 4-dehydrogenase b1406 pyridoxine 4-dehydrogenase
region_2 F 3414017 3414055 38 novel* b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
ID046II
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 20094 20168 74 novel* b0021 IS1 protein InsB b0021 IS1 protein InsB
region_1 R 1091390 1091413 23 novel* b1024 partially deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin b1024 partially deacetylated poly-beta-1,6-N-acetyl-D-glucosamine outer membrane porin
region_2 F 1105510 1105537 27 novel* b1044 uncharacterized protein YmdA b1044 uncharacterized protein YmdA
region_2 F 258193 258280 87 novel* b4710 IS1 transposase B b4710 IS1 transposase B
region_3 F 1652252 1652263 11 novel b1579 Qin prophage; putative defective integrase b1579 Qin prophage; putative defective integrase
region_3 F 279519 279679 160 novel* b0264 IS1 protein InsB b0264 IS1 protein InsB
region_4 F 290990 291150 160 novel* b0274 IS1 protein InsB b0274 IS1 protein InsB
region_4 R 2189552 2189560 -8 novel b2109 putative fimbrial usher protein YehB b2109 putative fimbrial usher protein YehB
region_5 R 1050074 1050100 26 novel? b4516 IS1 protein InsA b4516 IS1 protein InsA
region_5 R 3191402 3191420 18 novel* b3048 putative fimbrial protein YqiI b3048 putative fimbrial protein YqiI
region_6 F 1978778 1978875 97 novel* b1893 IS1 protein InsB b1893 IS1 protein InsB
region_6 R 4342838 4342846 -8 novel b4119 alpha-galactosidase b4119 alpha-galactosidase
region_7 R 3583825 3583945 120 novel* b3445 IS1 protein InsB b3445 IS1 protein InsB
ID057
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 4518471 4518472 novel b4403 putative rRNA methyltransferase b4294 KpLE2 phage-like element; IS1 repressor protein InsA
ID066II
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 3414054 3414067 -13 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
region_1 R -1 1950820 1950821 novel b4403 putative rRNA methyltransferase b1867 putative hydrolase
ID067
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 1105536 1105545 9 novel b1044 uncharacterized protein YmdA b1044 uncharacterized protein YmdA
region_2 F 1652256 1652263 -7 novel b1579 Qin prophage; putative defective integrase b1579 Qin prophage; putative defective integrase
region_3 R 2189552 2189561 -9 novel b2109 putative fimbrial usher protein YehB b2109 putative fimbrial usher protein YehB
region_4 R 3191420 3191429 -9 novel b3048 putative fimbrial protein YqiI b3048 putative fimbrial protein YqiI
ID068
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 315662 316025 363 novel* b0299 IS3 element protein InsF b0299 IS3 element protein InsF
region_2 F 392147 392555 408 novel* b0372 IS3 element protein InsF b0372 IS3 element protein InsF
region_3 R 567199 567598 399 novel* b0541 DLP12 prophage; IS3 element protein InsF b0541 DLP12 prophage; IS3 element protein InsF
region_4 F 1094667 1095071 404 novel* b1026 IS3 element protein InsF b1026 IS3 element protein InsF
region_5 R 2170601 2171003 402 novel* b2089 IS3 element protein InsF b2089 IS3 element protein InsF
ID073I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 1427941 1428485 544 novel* b4570 Rac prophage; protein LomR_1 b4570 Rac prophage; protein LomR_1
ID081I
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1427986 1428376 390 novel* b4570 Rac prophage; protein LomR_1 b4570 Rac prophage; protein LomR_1
ID088
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1474974 1474977 -3 novel b1406 pyridoxine 4-dehydrogenase b1406 pyridoxine 4-dehydrogenase
region_2 F 3414053 3414067 -14 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
ID092
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2422896 2422897 novel b4403 putative rRNA methyltransferase b2305 recombination-promoting nuclease RpnB
region_2 R -1 4537744 4537745 novel b4403 putative rRNA methyltransferase b4310 N-acetylneuraminate mutarotase
ID099
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208346 2208347 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ID101
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208311 2208312 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ID107II
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 4537611 4537612 novel b4403 putative rRNA methyltransferase b4310 N-acetylneuraminate mutarotase
ID124
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 1428004 1428372 368 novel* b4570 Rac prophage; protein LomR_1 b4570 Rac prophage; protein LomR_1
ID128
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 362430 362431 novel b4403 putative rRNA methyltransferase b0343 lactose permease
region_2 R -1 4079649 4079650 novel b4403 putative rRNA methyltransferase b3890 protein YiiF
ID130
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 381605 382349 744 novel* b0360 IS2 element protein InsA b0361 IS2 element protein
region_2 R 2996639 2997441 802 novel* b2860 IS2 insertion element protein InsB b2861 IS2 insertion element repressor InsA
region_3 F 3186364 3187082 718 novel* b3044 IS2 insertion element repressor InsA b3045 IS2 insertion element protein InsB
ID134
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 381345 381346 novel b4403 putative rRNA methyltransferase b4579 putative acyltransferase, N-terminal fragment
ID136
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 4518572 4518818 246 novel* b4294 KpLE2 phage-like element; IS1 repressor protein InsA b4295 KpLE2 phage-like element; putative DNA-binding transcriptional regulator YjhU
ID164
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 998706 998715 -9 novel b0939 putative fimbrial chaperone ElfD b0939 putative fimbrial chaperone ElfD
region_2 F 1479329 1479339 -10 novel b1410 hydrolase/methyltransferase domain-containing protein YnbC b1410 hydrolase/methyltransferase domain-containing protein YnbC
region_3 F 2187361 2187516 155 novel* b2107 periplasmic protein involved in nickel/cobalt export b2108 putative fimbrial adhesin YehA
region_4 F 2899337 2899346 -9 novel b4463 putative FAD-containing dehydrogenase b4463 putative FAD-containing dehydrogenase
region_5 F 3414053 3414067 -14 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
region_6 R 3668436 3668445 -9 novel b3518 cytochrome c peroxidase b3518 cytochrome c peroxidase
ID177
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 274206 274793 587 novel* b0259 CP4-6 prophage; IS5 transposase and trans-activator b0259 CP4-6 prophage; IS5 transposase and trans-activator
region_2 R 688108 688689 581 novel* b0656 IS5 transposase and trans-activator b0656 IS5 transposase and trans-activator
region_3 R 2066585 2066997 412 novel* b1994 CP4-44 prophage; IS5 transposase and trans-activator b1994 CP4-44 prophage; IS5 transposase and trans-activator
region_4 R 2289170 2289752 582 novel* b2192 IS5 transposase and trans-activator b2192 IS5 transposase and trans-activator
region_5 F 3130501 3131089 588 novel* b2982 IS5 transposase and trans-activator b2982 IS5 transposase and trans-activator
region_6 R 3365800 3366368 568 novel* b4569 putative uncharacterized protein YhcE b4569 putative uncharacterized protein YhcE
ID182
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 1871913 1871914 novel b4403 putative rRNA methyltransferase b1786 putative diguanylate cyclase DgcJ
region_1 R 737424 738254 830 novel* b0705 putative transposase YbfL b0706 H repeat-associated putative transposase YbfD
region_2 R 1334887 1334890 -3 novel b1275 DNA-binding transcriptional dual regulator CysB b4522 uncharacterized protein YmiA
region_3 F 3000372 3000382 -10 novel b2866 putative xanthine dehydrogenase molybdenum-binding subunit XdhA b2866 putative xanthine dehydrogenase molybdenum-binding subunit XdhA
region_4 R 3419943 3419952 -9 novel b3268 putative ABC transporter periplasmic binding protein YhdW b3268 putative ABC transporter periplasmic binding protein YhdW
region_5 F 3624672 3624682 -10 novel b3484 putative transposase b3484 putative transposase
region_6 R 3652115 3652124 9 novel? b3504 putative uncharacterized protein YhiS b3504 putative uncharacterized protein YhiS
region_7 F 3744038 3744043 -5 novel b3576 DUF386 domain-containing protein YiaL b3576 DUF386 domain-containing protein YiaL
ID186
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208341 2208342 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ID187
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 1427985 1428355 370 novel* b4570 Rac prophage; protein LomR_1 b4570 Rac prophage; protein LomR_1
region_1 R 1217589 1217598 -9 novel b1168 putative c-di-GMP phosphodiesterase PdeG b1168 putative c-di-GMP phosphodiesterase PdeG
region_2 F 1747255 1747264 -9 novel b1668 FAD/NAD(P) binding domain-containing protein YdhS b1668 FAD/NAD(P) binding domain-containing protein YdhS
region_3 R 2042730 2042740 -10 novel b1974 putative cytochrome b1974 putative cytochrome
region_4 R 4518692 4518693 1 novel? b4294 KpLE2 phage-like element; IS1 repressor protein InsA b4294 KpLE2 phage-like element; IS1 repressor protein InsA
ID197
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 FALSE 3414053 3414067 -14 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
ID214
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 1581836 1581844 -8 novel b1498 putative sulfatase b1498 putative sulfatase
region_2 F 3414054 3414065 -11 novel b3265 multidrug efflux pump membrane fusion lipoprotein AcrE b3265 multidrug efflux pump membrane fusion lipoprotein AcrE
region_3 R 3668436 3668445 -9 novel b3518 cytochrome c peroxidase b3518 cytochrome c peroxidase
ID229
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208351 2208352 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ID231
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 F 258291 258294 3 novel b4710 IS1 transposase B b4710 IS1 transposase B
region_2 F 1978886 1978889 3 novel b1893 IS1 protein InsB b1893 IS1 protein InsB
region_3 R 3583728 3583811 83 novel* b3445 IS1 protein InsB b3445 IS1 protein InsB
ID237
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 2208341 2208342 novel b4403 putative rRNA methyltransferase b2121 VWA domain-containing protein YehP
ORTHO055E
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R 315645 316025 380 novel? b0299 IS3 element protein InsF b0299 IS3 element protein InsF
region_2 F 392086 392555 469 novel? b0372 IS3 element protein InsF b0372 IS3 element protein InsF
region_3 R 567194 567589 395 novel? b0541 DLP12 prophage; IS3 element protein InsF b0541 DLP12 prophage; IS3 element protein InsF
region_4 F 1094622 1095079 457 novel* b1026 IS3 element protein InsF b1026 IS3 element protein InsF
region_5 F 2171050 2171086 36 novel? b2089 IS3 element protein InsF b2089 IS3 element protein InsF
region_6 F 3301809 3302069 260 novel* b3158 putative peptidase YhbU b3158 putative peptidase YhbU
ORTHO08HW
Region Orientation X-coordinates Y-coordinates Gap CallType LeftGene LeftGeneDescription RightGene RightGeneDescription
region_1 R -1 3109802 3109803 novel b4403 putative rRNA methyltransferase b2966 DUF554 domain-containing protein YqgA
region_1 R -1 4518471 4518472 novel b4403 putative rRNA methyltransferase b4294 KpLE2 phage-like element; IS1 repressor protein InsA


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Citations and Bibliography

If you have used rMAP, please cite:

Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583


The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite:


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